Rmu_co8028714.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8028714.1
OG0000139
Physical Location & Seq
Reverse (-)
141 .. 491
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8028714.1_g000001.1.cds

Sequence Viewer

Length: 351 bp
atgtttcaggatgtgatgcctcaggacgctaacaagtatactgaattttgggtgatgaaagagtatgggcggcctgaatcttgggttaaactctttgggtttaacctacatgatttaccagacgtgttcgattcattctgtagccgccttttttggaatcctattttcgtttcagaagacggtacagtcgtgatcaaactgcgtacccagaaggagttgatctggattaaatgccgtaaagaagagaagccgttctgcaccgaccggtaccgtcttgaggaggtggcggaacagcattatgcatttgatgccattttgtatgatgaaactctagtttcgatacctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

116

Amino Acids

14.0

Weight (kDa)

4.84

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 267
AccB1I GGYRCC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 38
AciI CCGC 3 cut(s) 70, 145, 287
AcsI RAATTY 1 cut(s) 44
AfaI GTAC 3 cut(s) 184, 205, 269
AfiI CCNNNNNNNGG 1 cut(s) 277
AflIII ACRYGT 1 cut(s) 123
AgeI ACCGGT 1 cut(s) 264
AjiI CACGTC 1 cut(s) 124
AoxI GGCC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 44
AsiGI ACCGGT 1 cut(s) 264
Asp700I GAANNNNTTC 1 cut(s) 251
Asp718I GGTACC 1 cut(s) 267
AsuHPI GGTGA 1 cut(s) 64
AxyI CCTNAGG 1 cut(s) 21
BaeI ACNNNNGTAYC 2 cut(s) 174, 207
BanI GGYRCC 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 183
BceAI ACGGC 2 cut(s) 219, 235
BclI TGATCA 1 cut(s) 192
BfaI CTAG 1 cut(s) 332
BfmI CTRYAG 1 cut(s) 139
BisI GCNGC 2 cut(s) 71, 145
BlsI GCNGC 2 cut(s) 72, 146
BmgBI CACGTC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 269
BmsI GCATC 2 cut(s) 6, 298
BpiI GAAGAC 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 296
BsaWI WCCGGW 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse118I RCCGGY 1 cut(s) 264
Bse21I CCTNAGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 35
BseRI GAGGAG 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 241
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 1 cut(s) 73
BshNI GGYRCC 1 cut(s) 267
BshTI ACCGGT 1 cut(s) 264
BsiEI CGRYCG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 265
BslI CCNNNNNNNGG 1 cut(s) 277
BsnI GGCC 1 cut(s) 73
Bsp143I GATC 2 cut(s) 192, 219
BspACI CCGC 3 cut(s) 70, 145, 287
BspANI GGCC 1 cut(s) 73
BspCNI CTCAG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 269
BspT107I GGYRCC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 264
BssAI RCCGGY 1 cut(s) 264
BssMI GATC 2 cut(s) 192, 219
BssNAI GTATAC 1 cut(s) 39
Bst1107I GTATAC 1 cut(s) 39
Bst4CI ACNGT 3 cut(s) 182, 187, 272
Bst6I CTCTTC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 21
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 195, 222
BstMBI GATC 2 cut(s) 192, 219
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstSFI CTRYAG 1 cut(s) 139
BstV2I GAAGAC 1 cut(s) 183
BstZ17I GTATAC 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 21
BsuRI GGCC 1 cut(s) 73
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 16
Cfr10I RCCGGY 1 cut(s) 264
CseI GACGC 1 cut(s) 35
Csp6I GTAC 3 cut(s) 183, 204, 268
CspAI ACCGGT 1 cut(s) 264
CviAII CATG 1 cut(s) 110
CviJI RGCY 3 cut(s) 73, 144, 250
CviKI_1 RGCY 3 cut(s) 73, 144, 250
CviQI GTAC 3 cut(s) 183, 204, 268
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 194, 221
DpnII GATC 2 cut(s) 192, 219
DrdI GACNNNNNNGTC 1 cut(s) 185
DseDI GACNNNNNNGTC 1 cut(s) 185
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 302
Eco81I CCTNAGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 304
FaeI CATG 1 cut(s) 113
FaiI YATR 5 cut(s) 39, 66, 111, 300, 321
FatI CATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 192
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 71, 145
FokI GGATG 1 cut(s) 23
Fsp4HI GCNGC 2 cut(s) 71, 145
FspBI CTAG 1 cut(s) 332
GluI GCNGC 2 cut(s) 71, 145
HaeIII GGCC 1 cut(s) 73
HapII CCGG 1 cut(s) 265
HgaI GACGC 1 cut(s) 35
Hin1II CATG 1 cut(s) 113
HinfI GANTC 3 cut(s) 77, 131, 157
HpaII CCGG 1 cut(s) 265
HphI GGTGA 1 cut(s) 64
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 175
Hpy188III TCNNGA 5 cut(s) 8, 23, 190, 223, 275
Hpy8I GTNNAC 1 cut(s) 39
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 3 cut(s) 182, 187, 272
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 258, 302
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 1 cut(s) 21
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 1 cut(s) 113
KpnI GGTACC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 192
Kzo9I GATC 2 cut(s) 192, 219
LpnPI CCDG 6 cut(s) 8, 87, 132, 208, 221, 278
LweI GCATC 2 cut(s) 6, 298
MaeI CTAG 1 cut(s) 332
MaeII ACGT 1 cut(s) 123
MalI GATC 2 cut(s) 194, 221
MboI GATC 2 cut(s) 192, 219
MboII GAAGA 2 cut(s) 188, 254
MluCI AATT 1 cut(s) 44
MnlI CCTC 3 cut(s) 30, 271, 274
Mph1103I ATGCAT 1 cut(s) 304
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 3 cut(s) 87, 102, 228
MspI CCGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 308
NdeII GATC 2 cut(s) 192, 219
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 1 cut(s) 269
NsiI ATGCAT 1 cut(s) 304
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 3 cut(s) 77, 131, 157
PinAI ACCGGT 1 cut(s) 264
PkrI GCNGC 2 cut(s) 72, 146
PspN4I GGNNCC 1 cut(s) 269
RsaI GTAC 3 cut(s) 184, 205, 269
RsaNI GTAC 3 cut(s) 183, 204, 268
SaqAI TTAA 3 cut(s) 87, 102, 228
SatI GCNGC 2 cut(s) 71, 145
Sau3AI GATC 2 cut(s) 192, 219
SetI ASST 4 cut(s) 108, 126, 285, 346
SfaNI GCATC 2 cut(s) 6, 298
SfcI CTRYAG 1 cut(s) 139
SmlI CTYRAG 1 cut(s) 275
SmoI CTYRAG 1 cut(s) 275
Sse9I AATT 1 cut(s) 44
SsiI CCGC 3 cut(s) 70, 145, 287
SspMI CTAG 1 cut(s) 332
TaaI ACNGT 3 cut(s) 182, 187, 272
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 129, 338
TasI AATT 1 cut(s) 44
TauI GCSGC 2 cut(s) 73, 147
TfiI GAWTC 3 cut(s) 77, 131, 157
Tru1I TTAA 3 cut(s) 87, 102, 228
Tru9I TTAA 3 cut(s) 87, 102, 228
TspDTI ATGAA 3 cut(s) 71, 123, 339
XapI RAATTY 1 cut(s) 44
XmiI GTMKAC 1 cut(s) 38
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 332
Zsp2I ATGCAT 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.