Rmu_sc0002652.1_g000016

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002652.1
OG0000139
Physical Location & Seq
Forward (+)
41693 .. 42415
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002652.1_g000016.1.cds

Sequence Viewer

Length: 723 bp
atgtcgagctgcgtggaactccctgaagatattgtagtcaagattctgtgccggttgccggtcaaatccttgatccggttcacttgtgtatcgaaacagtggcgttctattatcatttctgatcctaaatttggaaaatctcacctccaactagcttcacagctgggaaccctcggcagaaaagtcctcctcagctcctacccagcagtcatagagccaggtttgagggccaatgcttgttacgatggcggtaggaagtcaccccctctatttcaatccttagaggataagttttcagtcaaaaatttcacattcccatctggggagactgacggcatggaagaaatgggctcctacaatggtttggtacttgtaggccaaccgtatcgcgatcattacgagaacttgtctatctggaacctatctactggattcttccgcaagatacctaatccaagtttcagggtgaagtctgcaatggtaatcggtagatactttataaattatggttttggtcatgtgtccgccagcgacgactacaaacttgtcttcctaatacctgcccctagtgatatgctggaagtccatatcttctctctgagtgccaacatttggaaagttattacagctccttactcgtcatggccaggccggattagtggacagggactttttcaaatggagcaattcactgggtcattccccgcggaaatgagactttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

240

Amino Acids

26.89

Weight (kDa)

9.0

Isoelectric Point (pI)

45.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 500
Acc36I ACCTGC 1 cut(s) 568
AccB7I CCANNNNNTGG 1 cut(s) 612
AccII CGCG 2 cut(s) 390, 707
AciI CCGC 5 cut(s) 249, 439, 525, 705, 707
AclWI GGATC 2 cut(s) 67, 116
AcoI YGGCCR 1 cut(s) 644
AcsI RAATTY 2 cut(s) 128, 304
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 612
AgsI TTSAA 2 cut(s) 275, 677
AjnI CCWGG 2 cut(s) 217, 646
AluBI AGCT 5 cut(s) 9, 155, 163, 195, 629
AluI AGCT 5 cut(s) 9, 155, 163, 195, 629
Alw26I GTCTC 2 cut(s) 320, 709
AlwI GGATC 2 cut(s) 67, 116
AoxI GGCC 4 cut(s) 228, 376, 644, 649
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 128, 304
AspS9I GGNCC 1 cut(s) 228
AsuHPI GGTGA 3 cut(s) 134, 252, 478
BaeI ACNNNNGTAYC 2 cut(s) 72, 105
BalI TGGCCA 1 cut(s) 646
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 541
BbvCI CCTCAGC 1 cut(s) 191
BccI CCATC 2 cut(s) 239, 325
BceAI ACGGC 1 cut(s) 349
BciT130I CCWGG 2 cut(s) 219, 648
BcoDI GTCTC 2 cut(s) 320, 709
BfaI CTAG 2 cut(s) 152, 567
BfuAI ACCTGC 1 cut(s) 568
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 219, 648
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 3 cut(s) 169, 352, 419
BmrFI CCNGG 2 cut(s) 219, 648
BmrI ACTGGG 1 cut(s) 702
BmuI ACTGGG 1 cut(s) 702
BpiI GAAGAC 1 cut(s) 541
Bpu10I CCTNAGC 1 cut(s) 191
BsaJI CCNNGG 2 cut(s) 172, 705
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 612
Bse118I RCCGGY 2 cut(s) 51, 58
Bse1I ACTGG 2 cut(s) 433, 697
Bse3DI GCAATG 1 cut(s) 483
BseBI CCWGG 2 cut(s) 219, 648
BseDI CCNNGG 2 cut(s) 172, 705
BseLI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 612
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 2 cut(s) 205, 590
BseNI ACTGG 2 cut(s) 433, 697
BseRI GAGGAG 1 cut(s) 179
BseYI CCCAGC 2 cut(s) 163, 202
Bsh1236I CGCG 2 cut(s) 390, 707
BshFI GGCC 4 cut(s) 230, 378, 646, 651
BsiSI CCGG 4 cut(s) 52, 59, 76, 652
BslFI GGGAC 1 cut(s) 681
BslI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 612
BsmAI GTCTC 2 cut(s) 320, 709
BsmFI GGGAC 1 cut(s) 681
BsnI GGCC 4 cut(s) 230, 378, 646, 651
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 3 cut(s) 72, 121, 391
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 5 cut(s) 249, 439, 525, 705, 707
BspANI GGCC 4 cut(s) 230, 378, 646, 651
BspCNI CTCAG 2 cut(s) 204, 591
BspFNI CGCG 2 cut(s) 390, 707
BspLI GGNNCC 3 cut(s) 169, 352, 419
BspMI ACCTGC 1 cut(s) 568
BspPI GGATC 2 cut(s) 67, 116
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 2 cut(s) 51, 58
BsrI ACTGG 2 cut(s) 433, 697
BssAI RCCGGY 2 cut(s) 51, 58
BssECI CCNNGG 2 cut(s) 172, 705
BssMI GATC 3 cut(s) 72, 121, 391
Bst2UI CCWGG 2 cut(s) 219, 648
Bst4CI ACNGT 2 cut(s) 99, 384
BstC8I GCNNGC 1 cut(s) 529
BstDEI CTNAG 3 cut(s) 191, 280, 599
BstDSI CCRYGG 1 cut(s) 705
BstFNI CGCG 2 cut(s) 390, 707
BstKTI GATC 3 cut(s) 75, 124, 394
BstMAI GTCTC 2 cut(s) 320, 709
BstMBI GATC 3 cut(s) 72, 121, 391
BstNI CCWGG 2 cut(s) 219, 648
BstSCI CCNGG 2 cut(s) 217, 646
BstUI CGCG 2 cut(s) 390, 707
BstV2I GAAGAC 1 cut(s) 541
BsuRI GGCC 4 cut(s) 230, 378, 646, 651
BtgI CCRYGG 1 cut(s) 705
BtsIMutI CAGTG 2 cut(s) 104, 690
BtuMI TCGCGA 1 cut(s) 390
BveI ACCTGC 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 529
Cfr10I RCCGGY 2 cut(s) 51, 58
Cfr13I GGNCC 1 cut(s) 228
Cfr42I CCGCGG 1 cut(s) 708
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 337, 518, 642
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 3 cut(s) 191, 280, 599
DpnI GATC 3 cut(s) 74, 123, 393
DpnII GATC 3 cut(s) 72, 121, 391
EaeI YGGCCR 1 cut(s) 644
EciI GGCGGA 1 cut(s) 514
Eco24I GRGCYC 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 2 cut(s) 217, 646
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 3 cut(s) 340, 521, 645
FaiI YATR 8 cut(s) 212, 338, 500, 507, 519, 575, 588, 643
FaqI GGGAC 1 cut(s) 681
FatI CATG 3 cut(s) 336, 517, 641
FauI CCCGC 1 cut(s) 712
Fnu4HI GCNGC 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 2 cut(s) 152, 567
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 2 cut(s) 167, 206
HaeIII GGCC 4 cut(s) 230, 378, 646, 651
HapII CCGG 4 cut(s) 52, 59, 76, 652
Hin1II CATG 3 cut(s) 340, 521, 645
HinfI GANTC 2 cut(s) 43, 432
HpaII CCGG 4 cut(s) 52, 59, 76, 652
HphI GGTGA 3 cut(s) 134, 252, 478
Hpy166II GTNNAC 2 cut(s) 81, 662
Hpy188I TCNGA 2 cut(s) 121, 600
Hpy188III TCNNGA 3 cut(s) 40, 389, 415
Hpy8I GTNNAC 2 cut(s) 81, 662
Hpy99I CGWCG 1 cut(s) 536
HpyCH4III ACNGT 2 cut(s) 99, 384
HpyCH4V TGCA 1 cut(s) 476
HpyF3I CTNAG 3 cut(s) 191, 280, 599
Hsp92II CATG 3 cut(s) 340, 521, 645
KspI CCGCGG 1 cut(s) 708
Kzo9I GATC 3 cut(s) 72, 121, 391
LmnI GCTCC 4 cut(s) 200, 356, 634, 682
MaeI CTAG 2 cut(s) 152, 567
MaeIII GTNAC 2 cut(s) 239, 258
MalI GATC 3 cut(s) 74, 123, 393
MboI GATC 3 cut(s) 72, 121, 391
MboII GAAGA 5 cut(s) 38, 353, 427, 541, 583
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 646
MluCI AATT 4 cut(s) 128, 304, 502, 686
MluNI TGGCCA 1 cut(s) 646
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 7 cut(s) 155, 182, 197, 200, 219, 276, 277
Mox20I TGGCCA 1 cut(s) 646
MscI TGGCCA 1 cut(s) 646
Msp20I TGGCCA 1 cut(s) 646
MspA1I CMGCKG 2 cut(s) 163, 707
MspI CCGG 4 cut(s) 52, 59, 76, 652
MspR9I CCNGG 2 cut(s) 219, 648
MvaI CCWGG 2 cut(s) 219, 648
MvnI CGCG 2 cut(s) 390, 707
NdeII GATC 3 cut(s) 72, 121, 391
NlaIII CATG 3 cut(s) 340, 521, 645
NlaIV GGNNCC 3 cut(s) 169, 352, 419
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 258
NruI TCGCGA 1 cut(s) 390
PfeI GAWTC 2 cut(s) 43, 432
PflMI CCANNNNNTGG 1 cut(s) 612
PkrI GCNGC 1 cut(s) 11
PsiI TTATAA 1 cut(s) 500
Psp6I CCWGG 2 cut(s) 217, 646
PspFI CCCAGC 2 cut(s) 163, 202
PspGI CCWGG 2 cut(s) 217, 646
PspN4I GGNNCC 3 cut(s) 169, 352, 419
PspPI GGNCC 1 cut(s) 228
PvuII CAGCTG 1 cut(s) 163
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacII CCGCGG 1 cut(s) 708
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 3 cut(s) 72, 121, 391
Sau96I GGNCC 1 cut(s) 228
ScrFI CCNGG 2 cut(s) 219, 648
SduI GDGCHC 1 cut(s) 353
Sfr303I CCGCGG 1 cut(s) 708
SgrBI CCGCGG 1 cut(s) 708
Sse9I AATT 4 cut(s) 128, 304, 502, 686
SsiI CCGC 5 cut(s) 249, 439, 525, 705, 707
SspMI CTAG 2 cut(s) 152, 567
StyD4I CCNGG 2 cut(s) 217, 646
TaaI ACNGT 2 cut(s) 99, 384
TaqI TCGA 2 cut(s) 5, 92
TasI AATT 4 cut(s) 128, 304, 502, 686
TfiI GAWTC 2 cut(s) 43, 432
TscAI CASTG 2 cut(s) 104, 697
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 258
TspRI CASTG 2 cut(s) 104, 697
Van91I CCANNNNNTGG 1 cut(s) 612
XapI RAATTY 2 cut(s) 128, 304
XspI CTAG 2 cut(s) 152, 567
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.