RchiOBHm_Chr5g0075661

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000139
Physical Location & Seq
Forward (+)
81444830 .. 81446329
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35037

Sequence Viewer

Length: 489 bp
ATGTCGAAGGAGGAGGAGGTGGCTTTCGATCTCCCTGAAGATGTTCTAGTCAAGATTCTGTGCCGGTTGCCGGTCAAATCTTTGATCCGATTCACTTGTGTCTCGAAACGGTGGCGTTCTGTTATCATTTCCACTTGCATCTCAGACGAGAACCCTCTCCGTCCACGACTCCTCCTCTGCACTTATGTTCTAGATTATTGTTCCGTATTTGAATGGCAACCCTCTCGATTTGAGTGTTTAGGAGACTTGGACATGCCCTGTTTCGGAGATAATTCATTGGTTCACCGTCCTGGATTTGTATGGGAACCTTCTCGACTCACCGTCCCGCCGGAGGTCAAATCCGGAAGCATAATGGCCTCATGCAATGGTTTGGTGGTTCTAGGCGAATTATTCCATAGCTCTTACACGAATTTGTGCGTGTGGAACCCATCAACTGGATTCTTCTGCAAAATACCTAGTCCAGAGTTTTCGATGATTGTCTCTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

162

Amino Acids

18.3

Weight (kDa)

5.39

Isoelectric Point (pI)

57.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 10 - 44 3.9e-11 F-box domain
F-box-like PF12937 10 - 43 5.7e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 341
AciI CCGC 1 cut(s) 326
AclWI GGATC 1 cut(s) 79
AcsI RAATTY 1 cut(s) 409
AcuI CTGAAG 1 cut(s) 57
AfiI CCNNNNNNNGG 4 cut(s) 70, 263, 331, 434
AgsI TTSAA 1 cut(s) 212
AhdI GACNNNNNGTC 1 cut(s) 320
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw26I GTCTC 3 cut(s) 106, 237, 484
AlwI GGATC 1 cut(s) 79
Aor13HI TCCGGA 1 cut(s) 341
AoxI GGCC 1 cut(s) 354
ApoI RAATTY 1 cut(s) 409
Asp700I GAANNNNTTC 1 cut(s) 42
AsuHPI GGTGA 2 cut(s) 275, 310
BccI CCATC 1 cut(s) 436
BcgI CGANNNNNNTGC 2 cut(s) 206, 240
BciT130I CCWGG 1 cut(s) 291
BcoDI GTCTC 3 cut(s) 106, 237, 484
BfaI CTAG 4 cut(s) 47, 191, 380, 456
Bme1390I CCNGG 1 cut(s) 291
BmeRI GACNNNNNGTC 1 cut(s) 320
BmiI GGNNCC 2 cut(s) 306, 425
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 147
BsaWI WCCGGW 1 cut(s) 341
BsaXI ACNNNNNCTCC 2 cut(s) 156, 186
Bsc4I CCNNNNNNNGG 4 cut(s) 70, 263, 331, 434
Bse118I RCCGGY 2 cut(s) 63, 70
Bse1I ACTGG 1 cut(s) 439
Bse3DI GCAATG 1 cut(s) 370
BseAI TCCGGA 1 cut(s) 341
BseBI CCWGG 1 cut(s) 291
BseLI CCNNNNNNNGG 4 cut(s) 70, 263, 331, 434
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 4 cut(s) 26, 29, 161, 164
BsgI GTGCAG 1 cut(s) 163
BshFI GGCC 1 cut(s) 356
BsiSI CCGG 4 cut(s) 64, 71, 329, 342
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 70, 263, 331, 434
BsmAI GTCTC 3 cut(s) 106, 237, 484
BsmFI GGGAC 1 cut(s) 308
BsnI GGCC 1 cut(s) 356
Bsp13I TCCGGA 1 cut(s) 341
Bsp143I GATC 2 cut(s) 28, 84
BspACI CCGC 1 cut(s) 326
BspANI GGCC 1 cut(s) 356
BspCNI CTCAG 1 cut(s) 155
BspEI TCCGGA 1 cut(s) 341
BspLI GGNNCC 2 cut(s) 306, 425
BspPI GGATC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 370
BsrFI RCCGGY 2 cut(s) 63, 70
BsrI ACTGG 1 cut(s) 439
BssAI RCCGGY 2 cut(s) 63, 70
BssMI GATC 2 cut(s) 28, 84
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 3 cut(s) 111, 287, 322
BstDEI CTNAG 1 cut(s) 142
BstKTI GATC 2 cut(s) 31, 87
BstMAI GTCTC 3 cut(s) 106, 237, 484
BstMBI GATC 2 cut(s) 28, 84
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 289
BsuRI GGCC 1 cut(s) 356
Cfr10I RCCGGY 2 cut(s) 63, 70
CviAII CATG 2 cut(s) 253, 360
CviJI RGCY 3 cut(s) 23, 356, 399
CviKI_1 RGCY 3 cut(s) 23, 356, 399
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 30, 86
DpnII GATC 2 cut(s) 28, 84
DriI GACNNNNNGTC 1 cut(s) 320
Eam1105I GACNNNNNGTC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 2 cut(s) 256, 363
FaiI YATR 6 cut(s) 186, 254, 301, 350, 361, 396
FaqI GGGAC 1 cut(s) 308
FatI CATG 2 cut(s) 252, 359
FauI CCCGC 1 cut(s) 333
FspBI CTAG 4 cut(s) 47, 191, 380, 456
HaeIII GGCC 1 cut(s) 356
HapII CCGG 4 cut(s) 64, 71, 329, 342
Hin1II CATG 2 cut(s) 256, 363
HinfI GANTC 5 cut(s) 55, 90, 168, 315, 438
HpaII CCGG 4 cut(s) 64, 71, 329, 342
HphI GGTGA 2 cut(s) 275, 310
Hpy166II GTNNAC 2 cut(s) 164, 283
Hpy188I TCNGA 3 cut(s) 89, 145, 266
Hpy188III TCNNGA 8 cut(s) 52, 103, 191, 225, 312, 342, 461, 483
Hpy8I GTNNAC 2 cut(s) 164, 283
HpyAV CCTTC 1 cut(s) 318
HpyCH4III ACNGT 3 cut(s) 111, 287, 322
HpyCH4V TGCA 4 cut(s) 138, 180, 363, 447
HpyF3I CTNAG 1 cut(s) 142
Hsp92II CATG 2 cut(s) 256, 363
Kpn2I TCCGGA 1 cut(s) 341
Kzo9I GATC 2 cut(s) 28, 84
LweI GCATC 1 cut(s) 147
MaeI CTAG 4 cut(s) 47, 191, 380, 456
MalI GATC 2 cut(s) 30, 86
MboI GATC 2 cut(s) 28, 84
MboII GAAGA 2 cut(s) 50, 433
MluCI AATT 3 cut(s) 271, 386, 409
MlyI GAGTC 2 cut(s) 162, 309
MnlI CCTC 9 cut(s) 4, 7, 10, 165, 182, 185, 232, 325, 367
MroI TCCGGA 1 cut(s) 341
MroXI GAANNNNTTC 1 cut(s) 42
MspI CCGG 4 cut(s) 64, 71, 329, 342
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
NdeII GATC 2 cut(s) 28, 84
NlaIII CATG 2 cut(s) 256, 363
NlaIV GGNNCC 2 cut(s) 306, 425
NspI RCATGY 1 cut(s) 256
PdmI GAANNNNTTC 1 cut(s) 42
PfeI GAWTC 3 cut(s) 55, 90, 438
PflMI CCANNNNNTGG 1 cut(s) 434
PfoI TCCNGGA 1 cut(s) 289
PleI GAGTC 2 cut(s) 162, 309
PpsI GAGTC 2 cut(s) 162, 309
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 306, 425
Sau3AI GATC 2 cut(s) 28, 84
SchI GAGTC 2 cut(s) 162, 309
ScrFI CCNGG 1 cut(s) 291
SetI ASST 5 cut(s) 21, 310, 336, 401, 457
SfaNI GCATC 1 cut(s) 147
Sse9I AATT 3 cut(s) 271, 386, 409
SsiI CCGC 1 cut(s) 326
SspMI CTAG 4 cut(s) 47, 191, 380, 456
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 3 cut(s) 111, 287, 322
TaqI TCGA 6 cut(s) 5, 27, 104, 226, 313, 470
TasI AATT 3 cut(s) 271, 386, 409
TfiI GAWTC 3 cut(s) 55, 90, 438
TspDTI ATGAA 1 cut(s) 264
TspGWI ACGGA 2 cut(s) 149, 193
Van91I CCANNNNNTGG 1 cut(s) 434
XapI RAATTY 1 cut(s) 409
XbaI TCTAGA 1 cut(s) 190
XceI RCATGY 1 cut(s) 256
XmnI GAANNNNTTC 1 cut(s) 42
XspI CTAG 4 cut(s) 47, 191, 380, 456
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.