Rh7BG368900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000139
Physical Location & Seq
Reverse (-)
39421341 .. 39422745
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG368900.1

Sequence Viewer

Length: 954 bp
ATGTTACCCTCTCGATTTCAGTCCTTAGACGATAACTTTTCGGTCAAAAATCTCACCTTCCCATCCGAGCCGAATAGCGACATTGTATTTATGGGCTCCTGCAATGGTTTGGTAGTTTTAGGCAAGCTCTATCTCTATGATGAGGAACTTCTAGGCAAACTGTATTCTGATTTTTCTAACATGTTGGTAATCTGGAACCCATCCACTGGATTCGTCCGCAAAATAACTAGTCCAAATTGTCAGATTGGGATGATATCATTTTATGGTTTTGGTCAAGTGTTGCCCTCCGACGACTATAAACTTGTTCTGATACTCGATGCTGGTGGTCTTATGGAAGTACATGTGTTTTCAGTCGGAGCCAACTGTTGGAAAGTTGTTAAAGCTCCTGACTTGTTGCCATCCCCCATCTGGTCTACAGCATTGGGGACTTATTCAAATGGAGCAATTCATTGGGCCAGTTTTCGCAATCCTGAGACTTTCGAGCGACCTGTCTATGCTTTTGATTTGGCAAATGAGCAGTTTCGGGAAATGCCATTGCCTGTTCTTAGCCACAGCGAAGATGACATGGAGAGGATTCGAATAACAACTCCGGTTCTCGTAGGAGGATGTCTTTGTGTGATGTTTCAGGATATTGATGAGTATAGTGAATTTTGGGCGATGAAAGAGTATGGGGTGCCTGCATCTTGGGTTAAACTCTTTCGGTTAAATGTATGTGATTTACCAGATATGCTTGCTCCATTCTTTAGGCGCTATTACTGGAATCCTATTTTCATTGCAGAAGACGGTACATTTTTGTTCCAAATGAATAAGAAGGAGGAGTTGGTCAGGATTAAATGCTATAAAGAAGAGAAGCCAGTCTGCACCGGCCAGTACAGTCTTGAGGAGGTGCCGGGGTGCAGGTGTACAATTGATGCCATTTTGTATGATGAAACTCTTGTTTGGATACCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

317

Amino Acids

36.27

Weight (kDa)

4.69

Isoelectric Point (pI)

44.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 47 - 221 2.4e-07 F-box associated beta propeller domain
FBA_1 PF07734 53 - 284 1.4e-17 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 888
Acc36I ACCTGC 1 cut(s) 888
AccB1I GGYRCC 2 cut(s) 673, 886
AccB7I CCANNNNNTGG 2 cut(s) 206, 366
AccI GTMKAC 1 cut(s) 413
AciI CCGC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 865
AcsI RAATTY 1 cut(s) 647
AfaI GTAC 4 cut(s) 339, 787, 872, 904
AfiI CCNNNNNNNGG 3 cut(s) 206, 366, 408
AflIII ACRYGT 2 cut(s) 180, 340
AgsI TTSAA 1 cut(s) 435
AhlI ACTAGT 1 cut(s) 227
AjuI GAANNNNNNNTTGG 2 cut(s) 803, 835
AluBI AGCT 2 cut(s) 127, 383
AluI AGCT 2 cut(s) 127, 383
Alw26I GTCTC 1 cut(s) 467
AoxI GGCC 2 cut(s) 453, 865
ApoI RAATTY 1 cut(s) 647
AspLEI GCGC 1 cut(s) 750
AspS9I GGNCC 1 cut(s) 453
AsuC2I CCSGG 1 cut(s) 891
AsuHPI GGTGA 1 cut(s) 46
AsuII TTCGAA 1 cut(s) 577
BanI GGYRCC 2 cut(s) 673, 886
BanII GRGCYC 1 cut(s) 98
BbsI GAAGAC 1 cut(s) 786
BccI CCATC 4 cut(s) 70, 208, 406, 413
BciVI GTATCC 1 cut(s) 936
BcnI CCSGG 1 cut(s) 891
BcoDI GTCTC 1 cut(s) 467
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 152, 228
BfmI CTRYAG 1 cut(s) 414
BfoI RGCGCY 1 cut(s) 751
BfuAI ACCTGC 1 cut(s) 888
BfuI GTATCC 1 cut(s) 936
Bme1390I CCNGG 1 cut(s) 891
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 5 cut(s) 97, 197, 358, 675, 888
BmrFI CCNGG 1 cut(s) 891
BmsI GCATC 3 cut(s) 307, 689, 901
BpiI GAAGAC 1 cut(s) 786
Bpu14I TTCGAA 1 cut(s) 577
BpuEI CTTGAG 1 cut(s) 899
BpuMI CCSGG 1 cut(s) 891
BsaJI CCNNGG 1 cut(s) 890
BsaWI WCCGGW 1 cut(s) 589
Bsc4I CCNNNNNNNGG 3 cut(s) 206, 366, 408
Bse118I RCCGGY 1 cut(s) 863
Bse1I ACTGG 5 cut(s) 211, 456, 761, 854, 868
Bse3DI GCAATG 3 cut(s) 109, 533, 771
BseDI CCNNGG 1 cut(s) 890
BseGI GGATG 5 cut(s) 62, 200, 255, 398, 611
BseLI CCNNNNNNNGG 3 cut(s) 206, 366, 408
BseMI GCAATG 3 cut(s) 109, 533, 771
BseMII CTCAG 1 cut(s) 462
BseNI ACTGG 5 cut(s) 211, 456, 761, 854, 868
BseRI GAGGAG 2 cut(s) 830, 896
BsgI GTGCAG 2 cut(s) 844, 916
BshFI GGCC 2 cut(s) 455, 867
BshNI GGYRCC 2 cut(s) 673, 886
BsiSI CCGG 3 cut(s) 590, 864, 890
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 206, 366, 408
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 439
BsnI GGCC 2 cut(s) 455, 867
Bsp119I TTCGAA 1 cut(s) 577
Bsp1286I GDGCHC 1 cut(s) 98
Bsp1407I TGTACA 1 cut(s) 902
BspACI CCGC 1 cut(s) 217
BspANI GGCC 2 cut(s) 455, 867
BspCNI CTCAG 1 cut(s) 463
BspLI GGNNCC 5 cut(s) 97, 197, 358, 675, 888
BspMI ACCTGC 1 cut(s) 888
BspT104I TTCGAA 1 cut(s) 577
BspT107I GGYRCC 2 cut(s) 673, 886
BsrDI GCAATG 3 cut(s) 109, 533, 771
BsrFI RCCGGY 1 cut(s) 863
BsrGI TGTACA 1 cut(s) 902
BsrI ACTGG 5 cut(s) 211, 456, 761, 854, 868
BssAI RCCGGY 1 cut(s) 863
BssECI CCNNGG 1 cut(s) 890
Bst4CI ACNGT 4 cut(s) 162, 365, 785, 875
Bst6I CTCTTC 1 cut(s) 840
BstAUI TGTACA 1 cut(s) 902
BstBI TTCGAA 1 cut(s) 577
BstC8I GCNNGC 3 cut(s) 125, 678, 732
BstDEI CTNAG 3 cut(s) 25, 471, 545
BstF5I GGATG 5 cut(s) 62, 200, 255, 398, 611
BstH2I RGCGCY 1 cut(s) 751
BstHHI GCGC 1 cut(s) 750
BstMAI GTCTC 1 cut(s) 467
BstNSI RCATGY 2 cut(s) 184, 344
BstSCI CCNGG 1 cut(s) 889
BstSFI CTRYAG 1 cut(s) 414
BstV2I GAAGAC 1 cut(s) 786
BsuI GTATCC 1 cut(s) 936
BsuRI GGCC 2 cut(s) 455, 867
BtgZI GCGATG 1 cut(s) 671
BtsCI GGATG 5 cut(s) 62, 200, 255, 398, 611
BtsIMutI CAGTG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 888
Cac8I GCNNGC 3 cut(s) 125, 678, 732
CfoI GCGC 1 cut(s) 750
Cfr10I RCCGGY 1 cut(s) 863
Cfr13I GGNCC 1 cut(s) 453
Csp6I GTAC 4 cut(s) 338, 786, 871, 903
CviAII CATG 3 cut(s) 181, 341, 565
CviJI RGCY 9 cut(s) 70, 96, 127, 359, 383, 455, 549, 853, 867
CviKI_1 RGCY 9 cut(s) 70, 96, 127, 359, 383, 455, 549, 853, 867
CviQI GTAC 4 cut(s) 338, 786, 871, 903
DdeI CTNAG 3 cut(s) 25, 471, 545
EaeI YGGCCR 1 cut(s) 865
Eam1104I CTCTTC 1 cut(s) 840
EarI CTCTTC 1 cut(s) 840
Eco24I GRGCYC 1 cut(s) 98
Eco32I GATATC 1 cut(s) 255
EcoRV GATATC 1 cut(s) 255
EcoT38I GRGCYC 1 cut(s) 98
FaeI CATG 3 cut(s) 184, 344, 568
FaqI GGGAC 1 cut(s) 439
FatI CATG 3 cut(s) 180, 340, 564
FblI GTMKAC 1 cut(s) 413
FokI GGATG 5 cut(s) 49, 187, 262, 385, 618
FriOI GRGCYC 1 cut(s) 98
FspBI CTAG 2 cut(s) 152, 228
GlaI GCGC 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 751
HaeIII GGCC 2 cut(s) 455, 867
HapII CCGG 3 cut(s) 590, 864, 890
HhaI GCGC 1 cut(s) 750
Hin1II CATG 3 cut(s) 184, 344, 568
Hin6I GCGC 1 cut(s) 748
HinP1I GCGC 1 cut(s) 748
HinfI GANTC 3 cut(s) 210, 574, 760
HpaII CCGG 3 cut(s) 590, 864, 890
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 2 cut(s) 414, 903
Hpy188I TCNGA 6 cut(s) 67, 169, 243, 289, 309, 356
Hpy188III TCNNGA 8 cut(s) 12, 193, 386, 470, 524, 626, 826, 878
Hpy8I GTNNAC 2 cut(s) 414, 903
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 67, 805
HpyCH4III ACNGT 4 cut(s) 162, 365, 785, 875
HpyCH4V TGCA 5 cut(s) 102, 680, 776, 861, 897
HpyF3I CTNAG 3 cut(s) 25, 471, 545
Hsp92II CATG 3 cut(s) 184, 344, 568
HspAI GCGC 1 cut(s) 748
LmnI GCTCC 5 cut(s) 101, 356, 388, 440, 739
LweI GCATC 3 cut(s) 307, 689, 901
MaeI CTAG 2 cut(s) 152, 228
MaeIII GTNAC 1 cut(s) 3
MboII GAAGA 3 cut(s) 569, 791, 857
MfeI CAATTG 1 cut(s) 906
MhlI GDGCHC 1 cut(s) 98
MluCI AATT 4 cut(s) 235, 444, 647, 906
MmeI TCCRAC 3 cut(s) 312, 334, 347
MnlI CCTC 8 cut(s) 19, 136, 295, 564, 596, 808, 874, 877
MseI TTAA 4 cut(s) 378, 690, 704, 831
MspI CCGG 3 cut(s) 590, 864, 890
MspR9I CCNGG 1 cut(s) 891
MunI CAATTG 1 cut(s) 906
NciI CCSGG 1 cut(s) 891
NlaIII CATG 3 cut(s) 184, 344, 568
NlaIV GGNNCC 5 cut(s) 97, 197, 358, 675, 888
NspI RCATGY 2 cut(s) 184, 344
NspV TTCGAA 1 cut(s) 577
PaqCI CACCTGC 1 cut(s) 888
PciI ACATGT 2 cut(s) 180, 340
PfeI GAWTC 3 cut(s) 210, 574, 760
PflMI CCANNNNNTGG 2 cut(s) 206, 366
PscI ACATGT 2 cut(s) 180, 340
PspN4I GGNNCC 5 cut(s) 97, 197, 358, 675, 888
PspPI GGNCC 1 cut(s) 453
RsaI GTAC 4 cut(s) 339, 787, 872, 904
RsaNI GTAC 4 cut(s) 338, 786, 871, 903
SaqAI TTAA 4 cut(s) 378, 690, 704, 831
Sau96I GGNCC 1 cut(s) 453
ScrFI CCNGG 1 cut(s) 891
SduI GDGCHC 1 cut(s) 98
SetI ASST 7 cut(s) 59, 129, 385, 490, 888, 902, 949
SfaNI GCATC 3 cut(s) 307, 689, 901
SfcI CTRYAG 1 cut(s) 414
SfuI TTCGAA 1 cut(s) 577
SmlI CTYRAG 1 cut(s) 878
SmoI CTYRAG 1 cut(s) 878
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 4 cut(s) 235, 444, 647, 906
SsiI CCGC 1 cut(s) 217
SspMI CTAG 2 cut(s) 152, 228
StyD4I CCNGG 1 cut(s) 889
TaaI ACNGT 4 cut(s) 162, 365, 785, 875
TaqI TCGA 4 cut(s) 13, 315, 480, 577
TaqII GACCGA 1 cut(s) 31
TasI AATT 4 cut(s) 235, 444, 647, 906
TatI WGTACW 3 cut(s) 337, 870, 902
TfiI GAWTC 3 cut(s) 210, 574, 760
Tru1I TTAA 4 cut(s) 378, 690, 704, 831
Tru9I TTAA 4 cut(s) 378, 690, 704, 831
TscAI CASTG 1 cut(s) 211
TspDTI ATGAA 5 cut(s) 437, 674, 760, 818, 942
TspRI CASTG 1 cut(s) 211
Van91I CCANNNNNTGG 2 cut(s) 206, 366
XapI RAATTY 1 cut(s) 647
XceI RCATGY 2 cut(s) 184, 344
XcmI CCANNNNNNNNNTGG 1 cut(s) 405
XmiI GTMKAC 1 cut(s) 413
XspI CTAG 2 cut(s) 152, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.