Rh7CG387000

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000139
Physical Location & Seq
Forward (+)
48926614 .. 48927003
390 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG387000.1

Sequence Viewer

Length: 390 bp
ATGAACAGGATTCGAATAACAACTCCAGTTCTCGTAGGAGGATGTCTTTGTGTGATGTTTCAGGATCTTAATGAGTATAGTGAATTTTGGGCGATGAAAGAGTATGGGGTGCCTGCATCTTGGGTTAAACTCTTTCGGTTAAATGTACGTGATTTACTAGATATGCTTGCTCCATTCTTTATCCGCCGTTACTGGAATCCTATTTTCATTGCAGAAGACGGTACAGTTTTGACCCAACTGCATAACAATATGGAGTTGGTCAGGATTAAATGCTGTAAAGAAGAGAAGCCAGTCTGCACTGACCGGTACAGTCTTGAGGAGGTGCCAGGGTGTCATTGTTCGTTTGATGCCATTTTGTATGATGAAACTCTTGTTTTGGTACCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

129

Amino Acids

15.09

Weight (kDa)

5.04

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 379
AccB1I GGYRCC 3 cut(s) 109, 322, 379
AciI CCGC 1 cut(s) 184
AclWI GGATC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 4 cut(s) 147, 223, 308, 381
AgeI ACCGGT 1 cut(s) 303
AjnI CCWGG 1 cut(s) 325
AlwI GGATC 1 cut(s) 72
ApoI RAATTY 1 cut(s) 83
AsiGI ACCGGT 1 cut(s) 303
Asp718I GGTACC 1 cut(s) 379
AsuII TTCGAA 1 cut(s) 13
BanI GGYRCC 3 cut(s) 109, 322, 379
BbsI GAAGAC 1 cut(s) 222
BceAI ACGGC 1 cut(s) 171
BciT130I CCWGG 1 cut(s) 327
BfaI CTAG 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 327
BmiI GGNNCC 3 cut(s) 111, 324, 381
BmrFI CCNGG 1 cut(s) 327
BmsI GCATC 2 cut(s) 125, 337
BpiI GAAGAC 1 cut(s) 222
BpmI CTGGAG 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 13
BpuEI CTTGAG 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 326
BsaWI WCCGGW 1 cut(s) 303
Bse118I RCCGGY 1 cut(s) 303
Bse1I ACTGG 3 cut(s) 26, 197, 290
Bse3DI GCAATG 1 cut(s) 207
BseBI CCWGG 1 cut(s) 327
BseDI CCNNGG 1 cut(s) 326
BseGI GGATG 1 cut(s) 47
BseMI GCAATG 1 cut(s) 207
BseNI ACTGG 3 cut(s) 26, 197, 290
BseRI GAGGAG 1 cut(s) 332
BsgI GTGCAG 1 cut(s) 280
BshNI GGYRCC 3 cut(s) 109, 322, 379
BshTI ACCGGT 1 cut(s) 303
BsiSI CCGG 1 cut(s) 304
Bsp119I TTCGAA 1 cut(s) 13
Bsp143I GATC 1 cut(s) 64
BspACI CCGC 1 cut(s) 184
BspLI GGNNCC 3 cut(s) 111, 324, 381
BspPI GGATC 1 cut(s) 72
BspT104I TTCGAA 1 cut(s) 13
BspT107I GGYRCC 3 cut(s) 109, 322, 379
BsrDI GCAATG 1 cut(s) 207
BsrFI RCCGGY 1 cut(s) 303
BsrI ACTGG 3 cut(s) 26, 197, 290
BssAI RCCGGY 1 cut(s) 303
BssECI CCNNGG 1 cut(s) 326
BssMI GATC 1 cut(s) 64
Bst2UI CCWGG 1 cut(s) 327
Bst4CI ACNGT 3 cut(s) 221, 226, 311
Bst6I CTCTTC 1 cut(s) 276
BstBAI YACGTR 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 114, 168
BstF5I GGATG 1 cut(s) 47
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 64
BstYI RGATCY 1 cut(s) 64
BtgZI GCGATG 1 cut(s) 107
BtsCI GGATG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 297
Cac8I GCNNGC 2 cut(s) 114, 168
Cfr10I RCCGGY 1 cut(s) 303
Csp6I GTAC 4 cut(s) 146, 222, 307, 380
CspAI ACCGGT 1 cut(s) 303
CviJI RGCY 1 cut(s) 289
CviKI_1 RGCY 1 cut(s) 289
CviQI GTAC 4 cut(s) 146, 222, 307, 380
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 276
EarI CTCTTC 1 cut(s) 276
EciI GGCGGA 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 325
FaiI YATR 6 cut(s) 78, 105, 164, 243, 251, 360
FokI GGATG 1 cut(s) 54
FspBI CTAG 1 cut(s) 158
GsuI CTGGAG 1 cut(s) 9
HapII CCGG 1 cut(s) 304
HinfI GANTC 2 cut(s) 10, 196
HpaII CCGG 1 cut(s) 304
Hpy188III TCNNGA 3 cut(s) 62, 262, 314
HpyCH4III ACNGT 3 cut(s) 221, 226, 311
HpyCH4IV ACGT 1 cut(s) 148
HpyCH4V TGCA 4 cut(s) 116, 212, 241, 297
HpySE526I ACGT 1 cut(s) 148
KpnI GGTACC 1 cut(s) 383
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 9 cut(s) 39, 47, 126, 178, 247, 303, 312, 317, 339
LweI GCATC 2 cut(s) 125, 337
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 148
MaeIII GTNAC 1 cut(s) 188
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 227, 293
MflI RGATCY 1 cut(s) 64
MluCI AATT 1 cut(s) 83
MnlI CCTC 3 cut(s) 32, 310, 313
MseI TTAA 4 cut(s) 69, 126, 140, 267
MspI CCGG 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 327
MvaI CCWGG 1 cut(s) 327
NdeII GATC 1 cut(s) 64
NlaIV GGNNCC 3 cut(s) 111, 324, 381
NspV TTCGAA 1 cut(s) 13
PfeI GAWTC 2 cut(s) 10, 196
PinAI ACCGGT 1 cut(s) 303
Ppu21I YACGTR 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 325
PspGI CCWGG 1 cut(s) 325
PspN4I GGNNCC 3 cut(s) 111, 324, 381
PsuI RGATCY 1 cut(s) 64
RsaI GTAC 4 cut(s) 147, 223, 308, 381
RsaNI GTAC 4 cut(s) 146, 222, 307, 380
SaqAI TTAA 4 cut(s) 69, 126, 140, 267
Sau3AI GATC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 327
SetI ASST 3 cut(s) 151, 324, 385
SfaNI GCATC 2 cut(s) 125, 337
SfuI TTCGAA 1 cut(s) 13
SmlI CTYRAG 1 cut(s) 314
SmoI CTYRAG 1 cut(s) 314
Sse9I AATT 1 cut(s) 83
SsiI CCGC 1 cut(s) 184
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 1 cut(s) 325
TaaI ACNGT 3 cut(s) 221, 226, 311
TaiI ACGT 1 cut(s) 151
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 83
TfiI GAWTC 2 cut(s) 10, 196
Tru1I TTAA 4 cut(s) 69, 126, 140, 267
Tru9I TTAA 4 cut(s) 69, 126, 140, 267
TscAI CASTG 1 cut(s) 304
TspDTI ATGAA 4 cut(s) 17, 110, 196, 378
TspRI CASTG 1 cut(s) 304
XapI RAATTY 1 cut(s) 83
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.