Rmu_sc0027085.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027085.1
OG0000139
Physical Location & Seq
Reverse (-)
1 .. 1389
1389 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027085.1_g000001.1.cds

Sequence Viewer

Length: 1029 bp
atgtcgagctgcgtggaactccctgaagatattgtagtcaagattctgtgccggttgccggtcaaatccttgatccggttcacttgtgtatcgaaacagtggcgttctattatcatttctgatcctaaatttggaaaatctcacctccaactagcttcacagctgggaaccctcggcagaaaagtcctcctcacctcctacccagcagtcatagagccaggtttgagggccaatgcttgttacgatggcggtaggaagtcaccccatctatttcaatccttagaggataagttttcagtcaaaaatttcacattcccatctggggagattgacggcatggaagaaatgggctcctacaatggtttggtacttgtaggccaaccgtatcgcgatcattacgagaacttgtctatctggaacctatccgcaagatacctaatccaagtttcaggcgacgactacaaacttgtcttcctaatacctgcccctagtgatatgctggaagtccaaagcttctctctaagtgccaacatttggaaagttattagagctccttactcgtcatggccaggctggattagtggacaggggactttttcaaatggagcaattcactgggtcattccccgcggaaatgagactttgaacccagttatatatgcttttattttggcagaggagaacttccggctagtgccattgccacctgttttgtggcaaattgaagaaggcagaagtcagacagagataacaactctggttcatttaggaggatacctttgcatatggtctaggggccgttattttcttgaggaaggtgaagtttgggcgatgacacagtatggggtgcctgaatcttgggttaaactctttcagtttaatacacacgatctccgccatatcttttctggatactgcctatgggatctgtgtttcattacagaaagtgatacgatggtgttaagactgaataaggagttgttatggattgaatgccgtaacgaagagaagccggtctgcagtggaaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

343

Amino Acids

39.13

Weight (kDa)

6.02

Isoelectric Point (pI)

53.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 847
AccB7I CCANNNNNTGG 1 cut(s) 534
AccII CGCG 2 cut(s) 390, 630
AciI CCGC 5 cut(s) 249, 426, 628, 630, 895
AclWI GGATC 3 cut(s) 67, 116, 933
AcoI YGGCCR 1 cut(s) 566
AcsI RAATTY 2 cut(s) 128, 304
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 534
AgsI TTSAA 5 cut(s) 275, 600, 646, 725, 992
AjnI CCWGG 2 cut(s) 217, 568
AluBI AGCT 5 cut(s) 9, 155, 163, 513, 551
AluI AGCT 5 cut(s) 9, 155, 163, 513, 551
Alw21I GWGCWC 1 cut(s) 553
Alw26I GTCTC 1 cut(s) 632
AlwI GGATC 3 cut(s) 67, 116, 933
AoxI GGCC 4 cut(s) 228, 376, 566, 796
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 128, 304
AspS9I GGNCC 2 cut(s) 228, 796
AsuHPI GGTGA 4 cut(s) 134, 184, 252, 830
BaeI ACNNNNGTAYC 4 cut(s) 72, 105, 942, 975
BalI TGGCCA 1 cut(s) 568
BanI GGYRCC 1 cut(s) 847
BanII GRGCYC 2 cut(s) 353, 553
BbsI GAAGAC 1 cut(s) 463
Bbv12I GWGCWC 1 cut(s) 553
BccI CCATC 4 cut(s) 239, 273, 325, 949
BceAI ACGGC 3 cut(s) 349, 783, 981
BciT130I CCWGG 2 cut(s) 219, 570
BciVI GTATCC 2 cut(s) 767, 905
BcoDI GTCTC 1 cut(s) 632
BfaI CTAG 4 cut(s) 152, 489, 692, 792
BfmI CTRYAG 1 cut(s) 1018
BfuAI ACCTGC 1 cut(s) 490
BfuI GTATCC 2 cut(s) 767, 905
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 2 cut(s) 219, 570
BmgT120I GGNCC 2 cut(s) 228, 796
BmiI GGNNCC 5 cut(s) 169, 352, 419, 797, 849
BmrFI CCNGG 2 cut(s) 219, 570
BmrI ACTGGG 2 cut(s) 625, 644
BmuI ACTGGG 2 cut(s) 625, 644
BpiI GAAGAC 1 cut(s) 463
BpuEI CTTGAG 1 cut(s) 830
BsaJI CCNNGG 2 cut(s) 172, 628
BsaWI WCCGGW 1 cut(s) 75
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 534
Bse118I RCCGGY 3 cut(s) 51, 58, 1012
Bse1I ACTGG 2 cut(s) 620, 650
Bse3DI GCAATG 1 cut(s) 698
BseBI CCWGG 2 cut(s) 219, 570
BseDI CCNNGG 2 cut(s) 172, 628
BseLI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 534
BseMI GCAATG 1 cut(s) 698
BseNI ACTGG 2 cut(s) 620, 650
BseRI GAGGAG 2 cut(s) 179, 692
BseYI CCCAGC 2 cut(s) 163, 202
Bsh1236I CGCG 2 cut(s) 390, 630
BshFI GGCC 4 cut(s) 230, 378, 568, 798
BshNI GGYRCC 1 cut(s) 847
BsiHKAI GWGCWC 1 cut(s) 553
BsiSI CCGG 5 cut(s) 52, 59, 76, 688, 1013
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 5 cut(s) 58, 75, 131, 322, 534
BsmAI GTCTC 1 cut(s) 632
BsmFI GGGAC 1 cut(s) 604
BsmI GAATGC 1 cut(s) 998
BsnI GGCC 4 cut(s) 230, 378, 568, 798
Bsp1286I GDGCHC 2 cut(s) 353, 553
Bsp143I GATC 5 cut(s) 72, 121, 391, 889, 925
Bsp68I TCGCGA 1 cut(s) 390
BspACI CCGC 5 cut(s) 249, 426, 628, 630, 895
BspANI GGCC 4 cut(s) 230, 378, 568, 798
BspFNI CGCG 2 cut(s) 390, 630
BspLI GGNNCC 5 cut(s) 169, 352, 419, 797, 849
BspMAI CTGCAG 1 cut(s) 1022
BspMI ACCTGC 1 cut(s) 490
BspPI GGATC 3 cut(s) 67, 116, 933
BspT107I GGYRCC 1 cut(s) 847
BsrDI GCAATG 1 cut(s) 698
BsrFI RCCGGY 3 cut(s) 51, 58, 1012
BsrI ACTGG 2 cut(s) 620, 650
BssAI RCCGGY 3 cut(s) 51, 58, 1012
BssECI CCNNGG 2 cut(s) 172, 628
BssMI GATC 5 cut(s) 72, 121, 391, 889, 925
Bst2UI CCWGG 2 cut(s) 219, 570
Bst4CI ACNGT 3 cut(s) 99, 384, 840
Bst6I CTCTTC 1 cut(s) 999
BstDEI CTNAG 2 cut(s) 280, 521
BstDSI CCRYGG 1 cut(s) 628
BstFNI CGCG 2 cut(s) 390, 630
BstKTI GATC 5 cut(s) 75, 124, 394, 892, 928
BstMAI GTCTC 1 cut(s) 632
BstMBI GATC 5 cut(s) 72, 121, 391, 889, 925
BstNI CCWGG 2 cut(s) 219, 570
BstSCI CCNGG 2 cut(s) 217, 568
BstSFI CTRYAG 1 cut(s) 1018
BstUI CGCG 2 cut(s) 390, 630
BstV2I GAAGAC 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 925
BstYI RGATCY 1 cut(s) 925
BsuI GTATCC 2 cut(s) 767, 905
BsuRI GGCC 4 cut(s) 230, 378, 568, 798
BtgI CCRYGG 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 845
BtsI GCAGTG 1 cut(s) 1027
BtsIMutI CAGTG 3 cut(s) 104, 613, 1027
BtuMI TCGCGA 1 cut(s) 390
BveI ACCTGC 1 cut(s) 490
Cfr10I RCCGGY 3 cut(s) 51, 58, 1012
Cfr13I GGNCC 2 cut(s) 228, 796
Cfr42I CCGCGG 1 cut(s) 631
Csp6I GTAC 1 cut(s) 368
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 2 cut(s) 337, 564
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 2 cut(s) 280, 521
DpnI GATC 5 cut(s) 74, 123, 393, 891, 927
DpnII GATC 5 cut(s) 72, 121, 391, 889, 925
EaeI YGGCCR 1 cut(s) 566
Eam1104I CTCTTC 1 cut(s) 999
EarI CTCTTC 1 cut(s) 999
EciI GGCGGA 1 cut(s) 884
Ecl136II GAGCTC 1 cut(s) 551
Eco24I GRGCYC 2 cut(s) 353, 553
Eco53kI GAGCTC 1 cut(s) 551
Eco57I CTGAAG 1 cut(s) 45
EcoICRI GAGCTC 1 cut(s) 551
EcoRII CCWGG 2 cut(s) 217, 568
EcoT38I GRGCYC 2 cut(s) 353, 553
FaeI CATG 2 cut(s) 340, 567
FaqI GGGAC 1 cut(s) 604
FatI CATG 2 cut(s) 336, 563
FauI CCCGC 1 cut(s) 635
FauNDI CATATG 1 cut(s) 785
Fnu4HI GCNGC 1 cut(s) 10
FriOI GRGCYC 2 cut(s) 353, 553
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 4 cut(s) 152, 489, 692, 792
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 2 cut(s) 167, 206
HaeIII GGCC 4 cut(s) 230, 378, 568, 798
HapII CCGG 5 cut(s) 52, 59, 76, 688, 1013
Hin1II CATG 2 cut(s) 340, 567
HindIII AAGCTT 1 cut(s) 511
HinfI GANTC 2 cut(s) 43, 854
HpaII CCGG 5 cut(s) 52, 59, 76, 688, 1013
HphI GGTGA 4 cut(s) 134, 184, 252, 830
Hpy166II GTNNAC 2 cut(s) 81, 584
Hpy188I TCNGA 2 cut(s) 121, 741
Hpy188III TCNNGA 5 cut(s) 40, 389, 415, 809, 909
Hpy8I GTNNAC 2 cut(s) 81, 584
Hpy99I CGWCG 1 cut(s) 458
HpyAV CCTTC 2 cut(s) 722, 809
HpyCH4III ACNGT 3 cut(s) 99, 384, 840
HpyCH4V TGCA 2 cut(s) 783, 1020
HpyF3I CTNAG 2 cut(s) 280, 521
Hsp92II CATG 2 cut(s) 340, 567
KspI CCGCGG 1 cut(s) 631
Kzo9I GATC 5 cut(s) 72, 121, 391, 889, 925
LmnI GCTCC 3 cut(s) 356, 556, 605
MaeI CTAG 4 cut(s) 152, 489, 692, 792
MaeIII GTNAC 3 cut(s) 239, 258, 998
MalI GATC 5 cut(s) 74, 123, 393, 891, 927
MboI GATC 5 cut(s) 72, 121, 391, 889, 925
MboII GAAGA 5 cut(s) 38, 353, 463, 737, 1016
MflI RGATCY 1 cut(s) 925
MhlI GDGCHC 2 cut(s) 353, 553
MlsI TGGCCA 1 cut(s) 568
MluCI AATT 4 cut(s) 128, 304, 609, 720
MluNI TGGCCA 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 172
Mox20I TGGCCA 1 cut(s) 568
MscI TGGCCA 1 cut(s) 568
MseI TTAA 3 cut(s) 864, 879, 962
Msp20I TGGCCA 1 cut(s) 568
MspA1I CMGCKG 2 cut(s) 163, 630
MspI CCGG 5 cut(s) 52, 59, 76, 688, 1013
MspR9I CCNGG 2 cut(s) 219, 570
Mva1269I GAATGC 1 cut(s) 998
MvaI CCWGG 2 cut(s) 219, 570
MvnI CGCG 2 cut(s) 390, 630
NdeI CATATG 1 cut(s) 785
NdeII GATC 5 cut(s) 72, 121, 391, 889, 925
NlaIII CATG 2 cut(s) 340, 567
NlaIV GGNNCC 5 cut(s) 169, 352, 419, 797, 849
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 1 cut(s) 258
NruI TCGCGA 1 cut(s) 390
PctI GAATGC 1 cut(s) 998
PfeI GAWTC 2 cut(s) 43, 854
PflMI CCANNNNNTGG 1 cut(s) 534
PkrI GCNGC 1 cut(s) 11
Psp124BI GAGCTC 1 cut(s) 553
Psp6I CCWGG 2 cut(s) 217, 568
PspFI CCCAGC 2 cut(s) 163, 202
PspGI CCWGG 2 cut(s) 217, 568
PspN4I GGNNCC 5 cut(s) 169, 352, 419, 797, 849
PspPI GGNCC 2 cut(s) 228, 796
PstI CTGCAG 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 925
PvuII CAGCTG 1 cut(s) 163
RruI TCGCGA 1 cut(s) 390
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
SacI GAGCTC 1 cut(s) 553
SacII CCGCGG 1 cut(s) 631
SaqAI TTAA 3 cut(s) 864, 879, 962
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 5 cut(s) 72, 121, 391, 889, 925
Sau96I GGNCC 2 cut(s) 228, 796
ScrFI CCNGG 2 cut(s) 219, 570
SduI GDGCHC 2 cut(s) 353, 553
SfcI CTRYAG 1 cut(s) 1018
Sfr303I CCGCGG 1 cut(s) 631
SgrBI CCGCGG 1 cut(s) 631
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 4 cut(s) 128, 304, 609, 720
SsiI CCGC 5 cut(s) 249, 426, 628, 630, 895
SspMI CTAG 4 cut(s) 152, 489, 692, 792
SstI GAGCTC 1 cut(s) 553
StyD4I CCNGG 2 cut(s) 217, 568
TaaI ACNGT 3 cut(s) 99, 384, 840
TaqI TCGA 2 cut(s) 5, 92
TasI AATT 4 cut(s) 128, 304, 609, 720
TfiI GAWTC 2 cut(s) 43, 854
Tru1I TTAA 3 cut(s) 864, 879, 962
Tru9I TTAA 3 cut(s) 864, 879, 962
TscAI CASTG 3 cut(s) 104, 620, 1027
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 752, 925
TspRI CASTG 3 cut(s) 104, 620, 1027
Van91I CCANNNNNTGG 1 cut(s) 534
XapI RAATTY 2 cut(s) 128, 304
XcmI CCANNNNNNNNNTGG 2 cut(s) 711, 905
XspI CTAG 4 cut(s) 152, 489, 692, 792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.