Rroxscaffold_1G00005760

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7812097 .. 7814223
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005760.1

Sequence Viewer

Length: 726 bp
ATGTCGAGCTGCGTCGTGGATCTCCCTGAAGATATTATAGTCAAGATTCTGTGCCGTTTGCCGGTCAAATCTTTGATCCGGTTCACTTGTGTCTCGAAACGGTGGCGATCAGTTATCATTTCTGATCCTAAATTTGGAAAATCTCACTTTCAACTTGCTTCTCAGCAGAGAACCCTCCATAGAAAAGTCCTCCTCACCTCCTACCCTGCAGTCATAGAGCCAGGTTCGACGCCCAATGCTTGTTACGATGGCAGTTGGAAGAAATGGGCTGAGGATAAGTTCATCACTCTATTTCAGTCTTTAGATGATAAGTTTTCAGTTAAGAATTTCACATTCCCATCTGAGGAGATTGAGGATTTGGAAGAAATGGGCTCCTGTGATGGTTTGGTACTTGTAGGCCGACCCTGTCGCGATCATTACAAGAGCTTGTTTATCTGGAACCCATCTACTGGATTCTTCCGCAAGATACCTCATCCAAGTTTCAGGATGAAGTCAGGTAGATACTTTTTGAATTATGGTTTTGGTCATGTGTCCGCCAGCGACGACTACAAACTTGTCTCCGTAGTACCTGACTCCAGTGATATGCTGGAAGTCCATATCTTCTCTCTGAGTGCCAACATTTGGAAAGTTATTACAGCTCCTTACTCGTCATACCCATGCTGGGTCAATAGACACGGGACCTTTTCAAATGGAGCAATTCACTGGGTCACTCCCCTGCGGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

241

Amino Acids

27.6

Weight (kDa)

9.03

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 43 1.7e-11 F-box domain
F-box-like PF12937 7 - 42 8e-09 F-box-like
FBA_3 PF08268 94 - 236 5.1e-10 F-box associated beta propeller domain
FBA_1 PF07734 117 - 237 7.8e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 449, 621
AccII CGCG 1 cut(s) 411
AciI CCGC 3 cut(s) 460, 534, 718
AclWI GGATC 3 cut(s) 27, 70, 119
AcsI RAATTY 2 cut(s) 131, 325
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 230
AfaI GTAC 2 cut(s) 390, 567
AfiI CCNNNNNNNGG 6 cut(s) 61, 134, 343, 449, 621, 661
AgsI TTSAA 3 cut(s) 152, 511, 687
AjnI CCWGG 1 cut(s) 220
AluBI AGCT 3 cut(s) 9, 426, 638
AluI AGCT 3 cut(s) 9, 426, 638
Alw26I GTCTC 2 cut(s) 97, 562
AlwI GGATC 3 cut(s) 27, 70, 119
AoxI GGCC 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 131, 325
AspS9I GGNCC 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 187
AvaII GGWCC 1 cut(s) 678
BanII GRGCYC 1 cut(s) 374
BbvCI CCTCAGC 1 cut(s) 270
BccI CCATC 4 cut(s) 242, 346, 374, 451
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 222
BcoDI GTCTC 2 cut(s) 97, 562
BfmI CTRYAG 1 cut(s) 207
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 1 cut(s) 222
Bme18I GGWCC 1 cut(s) 678
BmgT120I GGNCC 1 cut(s) 678
BmiI GGNNCC 3 cut(s) 373, 440, 679
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 1 cut(s) 712
BmuI ACTGGG 1 cut(s) 712
BpmI CTGGAG 1 cut(s) 559
Bpu10I CCTNAGC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 230
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 134, 343, 449, 621, 661
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 3 cut(s) 454, 576, 707
BseBI CCWGG 1 cut(s) 222
BseGI GGATG 2 cut(s) 472, 492
BseLI CCNNNNNNNGG 6 cut(s) 61, 134, 343, 449, 621, 661
BseMII CTCAG 4 cut(s) 176, 261, 333, 599
BseNI ACTGG 3 cut(s) 454, 576, 707
BseRI GAGGAG 2 cut(s) 182, 359
BseYI CCCAGC 1 cut(s) 660
Bsh1236I CGCG 1 cut(s) 411
BshFI GGCC 1 cut(s) 399
BsiSI CCGG 2 cut(s) 62, 79
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 6 cut(s) 61, 134, 343, 449, 621, 661
BsmAI GTCTC 2 cut(s) 97, 562
BsmFI GGGAC 1 cut(s) 691
BsnI GGCC 1 cut(s) 399
Bsp1286I GDGCHC 1 cut(s) 374
Bsp143I GATC 5 cut(s) 19, 75, 107, 124, 412
Bsp68I TCGCGA 1 cut(s) 411
BspACI CCGC 3 cut(s) 460, 534, 718
BspANI GGCC 1 cut(s) 399
BspCNI CTCAG 4 cut(s) 175, 262, 334, 600
BspFNI CGCG 1 cut(s) 411
BspLI GGNNCC 3 cut(s) 373, 440, 679
BspMAI CTGCAG 1 cut(s) 211
BspPI GGATC 3 cut(s) 27, 70, 119
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 3 cut(s) 454, 576, 707
BssAI RCCGGY 1 cut(s) 61
BssMI GATC 5 cut(s) 19, 75, 107, 124, 412
BssNI GRCGYC 1 cut(s) 230
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 102
BstACI GRCGYC 1 cut(s) 230
BstC8I GCNNGC 1 cut(s) 538
BstDEI CTNAG 4 cut(s) 162, 270, 342, 608
BstF5I GGATG 2 cut(s) 472, 492
BstFNI CGCG 1 cut(s) 411
BstKTI GATC 5 cut(s) 22, 78, 110, 127, 415
BstMAI GTCTC 2 cut(s) 97, 562
BstMBI GATC 5 cut(s) 19, 75, 107, 124, 412
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 1 cut(s) 220
BstSFI CTRYAG 1 cut(s) 207
BstUI CGCG 1 cut(s) 411
BstX2I RGATCY 1 cut(s) 19
BstYI RGATCY 1 cut(s) 19
BsuRI GGCC 1 cut(s) 399
BtsCI GGATG 2 cut(s) 472, 492
BtsIMutI CAGTG 2 cut(s) 583, 700
BtuMI TCGCGA 1 cut(s) 411
Cac8I GCNNGC 1 cut(s) 538
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 1 cut(s) 678
CseI GACGC 1 cut(s) 238
Csp6I GTAC 2 cut(s) 389, 566
CviAII CATG 2 cut(s) 527, 657
CviJI RGCY 7 cut(s) 9, 220, 269, 372, 399, 426, 638
CviKI_1 RGCY 7 cut(s) 9, 220, 269, 372, 399, 426, 638
CviQI GTAC 2 cut(s) 389, 566
DdeI CTNAG 4 cut(s) 162, 270, 342, 608
DpnI GATC 5 cut(s) 21, 77, 109, 126, 414
DpnII GATC 5 cut(s) 19, 75, 107, 124, 412
EciI GGCGGA 1 cut(s) 523
Eco24I GRGCYC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 678
Eco57I CTGAAG 1 cut(s) 48
EcoO109I RGGNCCY 1 cut(s) 678
EcoRII CCWGG 1 cut(s) 220
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 2 cut(s) 530, 660
FaiI YATR 9 cut(s) 38, 180, 215, 516, 528, 584, 597, 652, 658
FaqI GGGAC 1 cut(s) 691
FatI CATG 2 cut(s) 526, 656
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 2 cut(s) 459, 499
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 1 cut(s) 10
GluI GCNGC 1 cut(s) 10
GsaI CCCAGC 1 cut(s) 664
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 1 cut(s) 399
HapII CCGG 2 cut(s) 62, 79
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 230
Hin1II CATG 2 cut(s) 530, 660
HinfI GANTC 3 cut(s) 46, 453, 572
HpaII CCGG 2 cut(s) 62, 79
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 1 cut(s) 84
Hpy188I TCNGA 3 cut(s) 124, 343, 609
Hpy188III TCNNGA 5 cut(s) 43, 94, 410, 436, 484
Hpy8I GTNNAC 1 cut(s) 84
Hpy99I CGWCG 3 cut(s) 17, 232, 545
HpyCH4III ACNGT 1 cut(s) 102
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 4 cut(s) 162, 270, 342, 608
Hsp92I GRCGYC 1 cut(s) 230
Hsp92II CATG 2 cut(s) 530, 660
Kzo9I GATC 5 cut(s) 19, 75, 107, 124, 412
LmnI GCTCC 3 cut(s) 377, 643, 692
MaeIII GTNAC 2 cut(s) 242, 706
MalI GATC 5 cut(s) 21, 77, 109, 126, 414
MboI GATC 5 cut(s) 19, 75, 107, 124, 412
MboII GAAGA 5 cut(s) 41, 271, 374, 448, 592
MflI RGATCY 1 cut(s) 19
MhlI GDGCHC 1 cut(s) 374
MluCI AATT 4 cut(s) 131, 325, 511, 696
MlyI GAGTC 1 cut(s) 566
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 8 cut(s) 185, 200, 203, 208, 265, 337, 346, 480
MseI TTAA 1 cut(s) 321
MslI CAYNNNNRTG 1 cut(s) 655
MspI CCGG 2 cut(s) 62, 79
MspR9I CCNGG 1 cut(s) 222
MvaI CCWGG 1 cut(s) 222
MvnI CGCG 1 cut(s) 411
NdeII GATC 5 cut(s) 19, 75, 107, 124, 412
NlaIII CATG 2 cut(s) 530, 660
NlaIV GGNNCC 3 cut(s) 373, 440, 679
NmuCI GTSAC 1 cut(s) 706
NruI TCGCGA 1 cut(s) 411
PfeI GAWTC 2 cut(s) 46, 453
PflFI GACNNNGTC 1 cut(s) 405
PflMI CCANNNNNTGG 2 cut(s) 449, 621
PkrI GCNGC 1 cut(s) 11
PleI GAGTC 1 cut(s) 566
PpsI GAGTC 1 cut(s) 566
PpuMI RGGWCCY 1 cut(s) 678
Psp5II RGGWCCY 1 cut(s) 678
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 1 cut(s) 220
PspN4I GGNNCC 3 cut(s) 373, 440, 679
PspPI GGNCC 1 cut(s) 678
PspPPI RGGWCCY 1 cut(s) 678
PstI CTGCAG 1 cut(s) 211
PsuI RGATCY 1 cut(s) 19
PsyI GACNNNGTC 1 cut(s) 405
RruI TCGCGA 1 cut(s) 411
RsaI GTAC 2 cut(s) 390, 567
RsaNI GTAC 2 cut(s) 389, 566
RseI CAYNNNNRTG 1 cut(s) 655
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 5 cut(s) 19, 75, 107, 124, 412
Sau96I GGNCC 1 cut(s) 678
SchI GAGTC 1 cut(s) 566
ScrFI CCNGG 1 cut(s) 222
SduI GDGCHC 1 cut(s) 374
SetI ASST 9 cut(s) 11, 200, 226, 428, 472, 499, 571, 640, 683
SfcI CTRYAG 1 cut(s) 207
SinI GGWCC 1 cut(s) 678
SmiMI CAYNNNNRTG 1 cut(s) 655
Sse9I AATT 4 cut(s) 131, 325, 511, 696
SsiI CCGC 3 cut(s) 460, 534, 718
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 102
TaqI TCGA 3 cut(s) 5, 95, 227
TasI AATT 4 cut(s) 131, 325, 511, 696
TfiI GAWTC 2 cut(s) 46, 453
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 2 cut(s) 583, 707
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 2 cut(s) 271, 503
TspGWI ACGGA 1 cut(s) 550
TspRI CASTG 2 cut(s) 583, 707
Tth111I GACNNNGTC 1 cut(s) 405
Van91I CCANNNNNTGG 2 cut(s) 449, 621
VpaK11BI GGWCC 1 cut(s) 678
XapI RAATTY 2 cut(s) 131, 325
XcmI CCANNNNNNNNNTGG 1 cut(s) 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.