Rroxscaffold_1G00005610

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Reverse (-)
7596358 .. 7597353
996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005610.1

Sequence Viewer

Length: 507 bp
ATGGCCGCATGGGCCTGGACCTTGCACAAGGTTCAGCTACAGTACCCAAGGAAATTAGAAAAAAACAGCTCTTTGCCTGGTCCACATCCAGCTGGACCAGCCTCCATGCCGCCGCCGTATCTTTATCTCTGTCGGATTTCTTTTGGTTATATTGGTTGGGAAATCTATTCAATGTCGGAGGAGGAGGAGGAGGTTTTCGATCTCCCTGAAGATATTGTAGTGCAGATTCTGTGTCGGTTGCCACTAGCATCTCAGCAGAGAACCCTCCGTCATGATTTACCACATGTGTTTGCTTCACGCTTCCATTGGCATAGCGATGTGAGTTTCATTACGGATAATGGTGCAATAGTGATCAGACTATTTGTGAAGGAGTTGGTCAGGATTGAATGCGGTAAAGGTGAGAAGCCGGTCTGCAGCAGCCTATATATGCTTGAGGATTTCCCTCAGCGTTCCTTTTTGTTGGATACAATTGTATATGATGAAACTTTAGTTTCGGTATCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

168

Amino Acids

19.36

Weight (kDa)

5.35

Isoelectric Point (pI)

59.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 110, 113, 390
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 283
AgsI TTSAA 2 cut(s) 171, 386
AjnI CCWGG 2 cut(s) 14, 76
AluBI AGCT 3 cut(s) 37, 69, 92
AluI AGCT 3 cut(s) 37, 69, 92
AlwNI CAGNNNCTG 1 cut(s) 229
AoxI GGCC 2 cut(s) 3, 12
ApeKI GCWGC 2 cut(s) 414, 417
AspS9I GGNCC 4 cut(s) 12, 18, 80, 95
AsuHPI GGTGA 1 cut(s) 410
AvaII GGWCC 3 cut(s) 18, 80, 95
BaeI ACNNNNGTAYC 2 cut(s) 456, 489
BbvCI CCTCAGC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 426, 429
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 2 cut(s) 16, 78
BciVI GTATCC 1 cut(s) 457
BclI TGATCA 1 cut(s) 351
BfaI CTAG 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 38, 412
BfuI GTATCC 1 cut(s) 457
BglI GCCNNNNNGGC 1 cut(s) 11
BisI GCNGC 5 cut(s) 6, 110, 113, 415, 418
BlsI GCNGC 5 cut(s) 7, 111, 114, 416, 419
Bme1390I CCNGG 2 cut(s) 16, 78
Bme18I GGWCC 3 cut(s) 18, 80, 95
BmgT120I GGNCC 4 cut(s) 12, 18, 80, 95
BmrFI CCNGG 2 cut(s) 16, 78
BmsI GCATC 1 cut(s) 257
Bpu10I CCTNAGC 1 cut(s) 444
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 406
BseBI CCWGG 2 cut(s) 16, 78
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 1 cut(s) 85
BseMII CTCAG 2 cut(s) 266, 458
BseRI GAGGAG 4 cut(s) 194, 197, 200, 203
BseXI GCAGC 2 cut(s) 426, 429
BsgI GTGCAG 1 cut(s) 242
BshFI GGCC 2 cut(s) 5, 14
BsiSI CCGG 1 cut(s) 407
BsmI GAATGC 1 cut(s) 392
BsnI GGCC 2 cut(s) 5, 14
Bsp143I GATC 2 cut(s) 199, 351
BspACI CCGC 4 cut(s) 6, 110, 113, 390
BspANI GGCC 2 cut(s) 5, 14
BspCNI CTCAG 2 cut(s) 265, 457
BspHI TCATGA 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 416
BsrFI RCCGGY 1 cut(s) 406
BssAI RCCGGY 1 cut(s) 406
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 2 cut(s) 199, 351
BssT1I CCWWGG 1 cut(s) 47
Bst2UI CCWGG 2 cut(s) 16, 78
Bst4CI ACNGT 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 252, 444
BstF5I GGATG 1 cut(s) 85
BstKTI GATC 2 cut(s) 202, 354
BstMBI GATC 2 cut(s) 199, 351
BstMWI GCNNNNNNNGC 2 cut(s) 11, 98
BstNI CCWGG 2 cut(s) 16, 78
BstNSI RCATGY 1 cut(s) 287
BstSCI CCNGG 2 cut(s) 14, 76
BstSFI CTRYAG 2 cut(s) 38, 412
BstV1I GCAGC 2 cut(s) 426, 429
BsuI GTATCC 1 cut(s) 457
BsuRI GGCC 2 cut(s) 5, 14
BtgZI GCGATG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 85
CaiI CAGNNNCTG 1 cut(s) 229
CciI TCATGA 1 cut(s) 271
Cfr10I RCCGGY 1 cut(s) 406
Cfr13I GGNCC 4 cut(s) 12, 18, 80, 95
Csp6I GTAC 1 cut(s) 43
CviAII CATG 4 cut(s) 9, 106, 272, 284
CviJI RGCY 8 cut(s) 5, 14, 37, 69, 92, 101, 406, 420
CviKI_1 RGCY 8 cut(s) 5, 14, 37, 69, 92, 101, 406, 420
CviQI GTAC 1 cut(s) 43
DdeI CTNAG 2 cut(s) 252, 444
DpnI GATC 2 cut(s) 201, 353
DpnII GATC 2 cut(s) 199, 351
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 1 cut(s) 47
Eco47I GGWCC 3 cut(s) 18, 80, 95
Eco57I CTGAAG 1 cut(s) 228
EcoRII CCWGG 2 cut(s) 14, 76
EcoT14I CCWWGG 1 cut(s) 47
ErhI CCWWGG 1 cut(s) 47
FaeI CATG 4 cut(s) 12, 109, 275, 287
FatI CATG 4 cut(s) 8, 105, 271, 283
FbaI TGATCA 1 cut(s) 351
Fnu4HI GCNGC 5 cut(s) 6, 110, 113, 415, 418
FokI GGATG 1 cut(s) 72
Fsp4HI GCNGC 5 cut(s) 6, 110, 113, 415, 418
FspBI CTAG 1 cut(s) 245
GluI GCNGC 5 cut(s) 6, 110, 113, 415, 418
HaeIII GGCC 2 cut(s) 5, 14
HapII CCGG 1 cut(s) 407
Hin1II CATG 4 cut(s) 12, 109, 275, 287
HinfI GANTC 1 cut(s) 226
HpaII CCGG 1 cut(s) 407
HphI GGTGA 1 cut(s) 410
Hpy166II GTNNAC 1 cut(s) 83
Hpy188I TCNGA 4 cut(s) 135, 178, 356, 502
Hpy188III TCNNGA 2 cut(s) 272, 379
Hpy8I GTNNAC 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 361
HpyCH4III ACNGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 25, 223, 344, 414
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 98
HpyF3I CTNAG 2 cut(s) 252, 444
Hsp92II CATG 4 cut(s) 12, 109, 275, 287
Ksp22I TGATCA 1 cut(s) 351
Kzo9I GATC 2 cut(s) 199, 351
LpnPI CCDG 9 cut(s) 28, 63, 78, 90, 102, 111, 219, 364, 420
Lsp1109I GCAGC 2 cut(s) 426, 429
LweI GCATC 1 cut(s) 257
MaeI CTAG 1 cut(s) 245
MalI GATC 2 cut(s) 201, 353
MboI GATC 2 cut(s) 199, 351
MboII GAAGA 1 cut(s) 221
MfeI CAATTG 1 cut(s) 468
MluCI AATT 2 cut(s) 53, 468
MmeI TCCRAC 3 cut(s) 113, 156, 441
MnlI CCTC 9 cut(s) 112, 172, 175, 178, 181, 184, 275, 427, 453
MslI CAYNNNNRTG 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 1 cut(s) 407
MspR9I CCNGG 2 cut(s) 16, 78
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 392
MvaI CCWGG 2 cut(s) 16, 78
MwoI GCNNNNNNNGC 2 cut(s) 11, 98
NdeII GATC 2 cut(s) 199, 351
NlaIII CATG 4 cut(s) 12, 109, 275, 287
NspI RCATGY 1 cut(s) 287
PagI TCATGA 1 cut(s) 271
PciI ACATGT 1 cut(s) 283
PctI GAATGC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 226
PkrI GCNGC 5 cut(s) 7, 111, 114, 416, 419
PscI ACATGT 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 14, 76
PspGI CCWGG 2 cut(s) 14, 76
PspPI GGNCC 4 cut(s) 12, 18, 80, 95
PstI CTGCAG 1 cut(s) 416
PstNI CAGNNNCTG 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 92
RsaI GTAC 1 cut(s) 44
RsaNI GTAC 1 cut(s) 43
RseI CAYNNNNRTG 1 cut(s) 315
SatI GCNGC 5 cut(s) 6, 110, 113, 415, 418
Sau3AI GATC 2 cut(s) 199, 351
Sau96I GGNCC 4 cut(s) 12, 18, 80, 95
ScrFI CCNGG 2 cut(s) 16, 78
SetI ASST 7 cut(s) 23, 33, 39, 71, 94, 195, 400
SfaNI GCATC 1 cut(s) 257
SfcI CTRYAG 2 cut(s) 38, 412
SfiI GGCCNNNNNGGCC 1 cut(s) 11
SinI GGWCC 3 cut(s) 18, 80, 95
SmiMI CAYNNNNRTG 1 cut(s) 315
SmlI CTYRAG 1 cut(s) 431
SmoI CTYRAG 1 cut(s) 431
Sse9I AATT 2 cut(s) 53, 468
SsiI CCGC 4 cut(s) 6, 110, 113, 390
SspMI CTAG 1 cut(s) 245
StyD4I CCNGG 2 cut(s) 14, 76
StyI CCWWGG 1 cut(s) 47
TaaI ACNGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 198
TasI AATT 2 cut(s) 53, 468
TauI GCSGC 3 cut(s) 8, 112, 115
TfiI GAWTC 1 cut(s) 226
TseI GCWGC 2 cut(s) 414, 417
TspDTI ATGAA 2 cut(s) 316, 495
TspGWI ACGGA 2 cut(s) 257, 347
VpaK11BI GGWCC 3 cut(s) 18, 80, 95
XceI RCATGY 1 cut(s) 287
XspI CTAG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.