Rmu_co8069518.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8069518.1
OG0000139
Physical Location & Seq
Forward (+)
1 .. 575
575 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8069518.1_g000001.1.cds

Sequence Viewer

Length: 575 bp
aaactttggtggttttatggaagtacaggtgttctcagtcagagccaactgttggaaagttgttaaagctccttacttgtcaccataccgcgtctggtctaaacaatgggggacttattcaaatggagcagttcattgggtcagtcatcgcgaacctgggattttcgagccatctgtctatgcttttgatctggctaatgaggagtttcgggaaatgccattgcctgttcttagccacagtgaagattacatgaaaatgacgcaagtaaggactccagttctcgtaggaggatgtctgtgtgtgatgtttcaggattttgatgagtgtagtgaattttgggcgatgaaagagtatggagtggctgcatcttgggttaaactctttcggtttaatgtatgtgatctaccagatgtgtttgctccattctttagctgctattactgggatcctattttcattgcagaagacggtacagttgtgatcaaattgcataagaagaaggagttggtcaggattaaatgccataaagaagagaagccagtctgcaccaaacggtacggtcttgaggaggtgc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

191

Amino Acids

22.31

Weight (kDa)

6.24

Isoelectric Point (pI)

45.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AccII CGCG 2 cut(s) 91, 151
AciI CCGC 1 cut(s) 89
AclWI GGATC 2 cut(s) 441, 454
AcsI RAATTY 1 cut(s) 333
AfaI GTAC 3 cut(s) 25, 473, 558
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 1 cut(s) 121
AjnI CCWGG 1 cut(s) 155
AjuI GAANNNNNNNTTGG 2 cut(s) 489, 521
AluBI AGCT 2 cut(s) 69, 433
AluI AGCT 2 cut(s) 69, 433
AlwI GGATC 2 cut(s) 441, 454
ApeKI GCWGC 2 cut(s) 363, 433
ApoI RAATTY 1 cut(s) 333
AsuHPI GGTGA 1 cut(s) 73
BaeI ACNNNNGTAYC 2 cut(s) 463, 496
BamHI GGATCC 1 cut(s) 446
BbsI GAAGAC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 350, 420
BccI CCATC 1 cut(s) 179
BciT130I CCWGG 1 cut(s) 157
BclI TGATCA 1 cut(s) 481
BisI GCNGC 2 cut(s) 364, 434
BlsI GCNGC 2 cut(s) 365, 435
Bme1390I CCNGG 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 448
BmrFI CCNGG 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 452
BmsI GCATC 1 cut(s) 375
BmuI ACTGGG 1 cut(s) 452
BpiI GAAGAC 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 259
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 1 cut(s) 52
Bse1I ACTGG 3 cut(s) 276, 447, 540
Bse3DI GCAATG 2 cut(s) 219, 457
BseBI CCWGG 1 cut(s) 157
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 297
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMI GCAATG 2 cut(s) 219, 457
BseMII CTCAG 1 cut(s) 49
BseNI ACTGG 3 cut(s) 276, 447, 540
BseRI GAGGAG 1 cut(s) 216
BseXI GCAGC 2 cut(s) 350, 420
BsgI GTGCAG 1 cut(s) 530
Bsh1236I CGCG 2 cut(s) 91, 151
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 52
BsmFI GGGAC 1 cut(s) 125
Bsp143I GATC 4 cut(s) 188, 401, 446, 481
Bsp68I TCGCGA 1 cut(s) 151
BspACI CCGC 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 48
BspFNI CGCG 2 cut(s) 91, 151
BspLI GGNNCC 1 cut(s) 448
BspPI GGATC 2 cut(s) 441, 454
BsrDI GCAATG 2 cut(s) 219, 457
BsrI ACTGG 3 cut(s) 276, 447, 540
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 4 cut(s) 188, 401, 446, 481
Bst2UI CCWGG 1 cut(s) 157
Bst4CI ACNGT 6 cut(s) 51, 240, 471, 476, 556, 561
Bst6I CTCTTC 1 cut(s) 526
BstDEI CTNAG 2 cut(s) 35, 231
BstF5I GGATG 1 cut(s) 297
BstFNI CGCG 2 cut(s) 91, 151
BstKTI GATC 4 cut(s) 191, 404, 449, 484
BstMBI GATC 4 cut(s) 188, 401, 446, 481
BstNI CCWGG 1 cut(s) 157
BstSCI CCNGG 1 cut(s) 155
BstUI CGCG 2 cut(s) 91, 151
BstV1I GCAGC 2 cut(s) 350, 420
BstV2I GAAGAC 1 cut(s) 472
BstX2I RGATCY 1 cut(s) 446
BstYI RGATCY 1 cut(s) 446
BtgZI GCGATG 2 cut(s) 132, 357
BtsCI GGATG 1 cut(s) 297
BtsIMutI CAGTG 1 cut(s) 245
BtuMI TCGCGA 1 cut(s) 151
CseI GACGC 2 cut(s) 80, 269
Csp6I GTAC 3 cut(s) 24, 472, 557
CviAII CATG 1 cut(s) 251
CviJI RGCY 8 cut(s) 45, 69, 170, 195, 235, 363, 433, 539
CviKI_1 RGCY 8 cut(s) 45, 69, 170, 195, 235, 363, 433, 539
CviQI GTAC 3 cut(s) 24, 472, 557
DdeI CTNAG 2 cut(s) 35, 231
DpnI GATC 4 cut(s) 190, 403, 448, 483
DpnII GATC 4 cut(s) 188, 401, 446, 481
Eam1104I CTCTTC 1 cut(s) 526
EarI CTCTTC 1 cut(s) 526
EcoRII CCWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 254
FaiI YATR 8 cut(s) 18, 86, 181, 252, 355, 398, 493, 526
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 250
FbaI TGATCA 1 cut(s) 481
Fnu4HI GCNGC 2 cut(s) 364, 434
FokI GGATG 1 cut(s) 304
Fsp4HI GCNGC 2 cut(s) 364, 434
GluI GCNGC 2 cut(s) 364, 434
GsuI CTGGAG 1 cut(s) 259
HgaI GACGC 2 cut(s) 80, 269
Hin1II CATG 1 cut(s) 254
HinfI GANTC 1 cut(s) 272
HphI GGTGA 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 5 cut(s) 150, 210, 312, 512, 564
HpyAV CCTTC 1 cut(s) 494
HpyCH4III ACNGT 6 cut(s) 51, 240, 471, 476, 556, 561
HpyCH4V TGCA 4 cut(s) 366, 462, 491, 547
HpyF3I CTNAG 2 cut(s) 35, 231
Hsp92II CATG 1 cut(s) 254
Ksp22I TGATCA 1 cut(s) 481
Kzo9I GATC 4 cut(s) 188, 401, 446, 481
LmnI GCTCC 3 cut(s) 74, 126, 425
Lsp1109I GCAGC 2 cut(s) 350, 420
LweI GCATC 1 cut(s) 375
MaeIII GTNAC 1 cut(s) 79
MalI GATC 4 cut(s) 190, 403, 448, 483
MboI GATC 4 cut(s) 188, 401, 446, 481
MboII GAAGA 4 cut(s) 255, 477, 509, 543
MflI RGATCY 1 cut(s) 446
MluCI AATT 2 cut(s) 333, 486
MlyI GAGTC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 33
MnlI CCTC 4 cut(s) 194, 282, 560, 563
MseI TTAA 4 cut(s) 64, 376, 391, 517
MslI CAYNNNNRTG 1 cut(s) 255
MspR9I CCNGG 1 cut(s) 157
MvaI CCWGG 1 cut(s) 157
MvnI CGCG 2 cut(s) 91, 151
NdeII GATC 4 cut(s) 188, 401, 446, 481
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 448
NmuCI GTSAC 1 cut(s) 79
NruI TCGCGA 1 cut(s) 151
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 2 cut(s) 365, 435
PleI GAGTC 1 cut(s) 266
PpsI GAGTC 1 cut(s) 266
Psp6I CCWGG 1 cut(s) 155
PspGI CCWGG 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 448
PsuI RGATCY 1 cut(s) 446
RruI TCGCGA 1 cut(s) 151
RsaI GTAC 3 cut(s) 25, 473, 558
RsaNI GTAC 3 cut(s) 24, 472, 557
RseI CAYNNNNRTG 1 cut(s) 255
SaqAI TTAA 4 cut(s) 64, 376, 391, 517
SatI GCNGC 2 cut(s) 364, 434
Sau3AI GATC 4 cut(s) 188, 401, 446, 481
SchI GAGTC 1 cut(s) 266
ScrFI CCNGG 1 cut(s) 157
SetI ASST 5 cut(s) 31, 71, 158, 435, 574
SfaNI GCATC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 255
SmlI CTYRAG 1 cut(s) 564
SmoI CTYRAG 1 cut(s) 564
Sse9I AATT 2 cut(s) 333, 486
SsiI CCGC 1 cut(s) 89
StyD4I CCNGG 1 cut(s) 155
TaaI ACNGT 6 cut(s) 51, 240, 471, 476, 556, 561
TaqI TCGA 1 cut(s) 166
TasI AATT 2 cut(s) 333, 486
TatI WGTACW 1 cut(s) 23
Tru1I TTAA 4 cut(s) 64, 376, 391, 517
Tru9I TTAA 4 cut(s) 64, 376, 391, 517
TscAI CASTG 1 cut(s) 245
TseFI GTSAC 1 cut(s) 79
TseI GCWGC 2 cut(s) 363, 433
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 4 cut(s) 123, 267, 360, 446
TspRI CASTG 1 cut(s) 245
Van91I CCANNNNNTGG 1 cut(s) 52
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.