Rmu_sc0042295.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0042295.1
OG0000139
Physical Location & Seq
Reverse (-)
180 .. 878
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0042295.1_g000001.1.cds

Sequence Viewer

Length: 699 bp
atggacggaaatgaaaactgcgcattctatataaatcatgggtttggtcatgtgtttgccactgatgactataaacttgtttgtgttttagtagcctccattggaggtcttgcaggactccatgtcttctcagtgagggacaacttttggaaagttagagctgctaacttgccattgccaggcttgcatggtggaccggggactctttcaaatgaagcacttcactggatcagctaccctgaaaatgagcttttgagctctatctatgcttttgatttggctgaggaggagttccggcaagtgtcactgccagtttttacccaaatagaagataccgtgaatgggttaaagtctctgattcttttaaatggatgcctttgcgtatggtttgtggatagtaattggcattataacttttgggcaatgacagagtacgcggtgaccaagtcttgggttaagctccttcaatttagtgtacacgatttaccggatgtctttacttcatatggtatttgggatcccattttcatcacagaaggcggtacggttgtgatcaaactggataacaaggaggagttggtcaagattgagttgcggaaagaagagaagtcattctgcagtggacggtataggcttgggtgtaagctttattttgacactgctgtatatgatgaaactctggtttcggtaccttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

232

Amino Acids

26.25

Weight (kDa)

4.93

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
Acc16I TGCGCA 1 cut(s) 22
Acc65I GGTACC 1 cut(s) 688
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 450
AccII CGCG 1 cut(s) 437
AciI CCGC 3 cut(s) 437, 540, 595
AclWI GGATC 3 cut(s) 236, 512, 525
AfaI GTAC 4 cut(s) 434, 477, 544, 690
AfiI CCNNNNNNNGG 3 cut(s) 179, 342, 450
AgsI TTSAA 2 cut(s) 210, 467
AhdI GACNNNNNGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 6 cut(s) 161, 234, 250, 258, 460, 646
AluI AGCT 6 cut(s) 161, 234, 250, 258, 460, 646
Alw21I GWGCWC 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 357
AlwI GGATC 3 cut(s) 236, 512, 525
ApeKI GCWGC 1 cut(s) 161
Asp700I GAANNNNTTC 2 cut(s) 219, 611
Asp718I GGTACC 1 cut(s) 688
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 1 cut(s) 198
AsuHPI GGTGA 1 cut(s) 451
AvaII GGWCC 1 cut(s) 194
BaeI ACNNNNGTAYC 2 cut(s) 534, 567
BamHI GGATCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 260
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 1 cut(s) 260
BbvCI CCTCAGC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 148
BciT130I CCWGG 1 cut(s) 180
BclI TGATCA 1 cut(s) 552
BcnI CCSGG 1 cut(s) 198
BcoDI GTCTC 1 cut(s) 357
BfmI CTRYAG 1 cut(s) 616
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
Bme1390I CCNGG 2 cut(s) 180, 198
Bme18I GGWCC 1 cut(s) 194
BmeRI GACNNNNNGTC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 2 cut(s) 519, 690
BmrFI CCNGG 2 cut(s) 180, 198
BmsI GCATC 1 cut(s) 362
BpiI GAAGAC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 197
BsaWI WCCGGW 1 cut(s) 487
Bsc4I CCNNNNNNNGG 3 cut(s) 179, 342, 450
Bse1I ACTGG 3 cut(s) 230, 311, 564
Bse3DI GCAATG 2 cut(s) 173, 429
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 197
BseGI GGATG 2 cut(s) 377, 496
BseLI CCNNNNNNNGG 3 cut(s) 179, 342, 450
BseMI GCAATG 2 cut(s) 173, 429
BseMII CTCAG 2 cut(s) 144, 273
BseNI ACTGG 3 cut(s) 230, 311, 564
BseRI GAGGAG 3 cut(s) 299, 302, 587
BseXI GCAGC 1 cut(s) 148
Bsh1236I CGCG 1 cut(s) 437
BshNI GGYRCC 1 cut(s) 688
BsiHKAI GWGCWC 1 cut(s) 260
BsiSI CCGG 3 cut(s) 197, 295, 488
BslFI GGGAC 2 cut(s) 152, 214
BslI CCNNNNNNNGG 3 cut(s) 179, 342, 450
BsmAI GTCTC 1 cut(s) 357
BsmFI GGGAC 2 cut(s) 152, 214
BsmI GAATGC 1 cut(s) 23
Bsp1286I GDGCHC 1 cut(s) 260
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 3 cut(s) 228, 517, 552
BspACI CCGC 3 cut(s) 437, 540, 595
BspCNI CTCAG 2 cut(s) 143, 274
BspFNI CGCG 1 cut(s) 437
BspHI TCATGA 1 cut(s) 695
BspLI GGNNCC 2 cut(s) 519, 690
BspMAI CTGCAG 1 cut(s) 620
BspPI GGATC 3 cut(s) 236, 512, 525
BspT107I GGYRCC 1 cut(s) 688
BsrDI GCAATG 2 cut(s) 173, 429
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 3 cut(s) 230, 311, 564
BssECI CCNNGG 1 cut(s) 197
BssMI GATC 3 cut(s) 228, 517, 552
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 337, 547, 627
Bst6I CTCTTC 1 cut(s) 597
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 2 cut(s) 130, 282
BstEII GGTNACC 1 cut(s) 439
BstF5I GGATG 2 cut(s) 377, 496
BstFNI CGCG 1 cut(s) 437
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 3 cut(s) 231, 520, 555
BstMAI GTCTC 1 cut(s) 357
BstMBI GATC 3 cut(s) 228, 517, 552
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 180
BstPI GGTNACC 1 cut(s) 439
BstSCI CCNGG 2 cut(s) 178, 196
BstSFI CTRYAG 1 cut(s) 616
BstUI CGCG 1 cut(s) 437
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 118
BstX2I RGATCY 1 cut(s) 517
BstYI RGATCY 1 cut(s) 517
BtsCI GGATG 2 cut(s) 377, 496
BtsI GCAGTG 3 cut(s) 305, 625, 657
BtsIMutI CAGTG 6 cut(s) 60, 138, 223, 305, 625, 657
Cac8I GCNNGC 1 cut(s) 185
CciI TCATGA 1 cut(s) 695
CfoI GCGC 1 cut(s) 23
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 4 cut(s) 433, 476, 543, 689
CviAII CATG 5 cut(s) 38, 50, 122, 188, 696
CviQI GTAC 4 cut(s) 433, 476, 543, 689
DdeI CTNAG 2 cut(s) 130, 282
DpnI GATC 3 cut(s) 230, 519, 554
DpnII GATC 3 cut(s) 228, 517, 552
DraI TTTAAA 1 cut(s) 366
DriI GACNNNNNGTC 1 cut(s) 122
Eam1104I CTCTTC 1 cut(s) 597
Eam1105I GACNNNNNGTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 597
Ecl136II GAGCTC 1 cut(s) 258
Eco24I GRGCYC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 194
Eco53kI GAGCTC 1 cut(s) 258
Eco91I GGTNACC 1 cut(s) 439
EcoICRI GAGCTC 1 cut(s) 258
EcoO65I GGTNACC 1 cut(s) 439
EcoRII CCWGG 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 260
FaeI CATG 5 cut(s) 41, 53, 125, 191, 699
FaqI GGGAC 2 cut(s) 152, 214
FatI CATG 5 cut(s) 37, 49, 121, 187, 695
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 552
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 384, 503
FriOI GRGCYC 1 cut(s) 260
Fsp4HI GCNGC 1 cut(s) 162
FspI TGCGCA 1 cut(s) 22
GlaI GCGC 1 cut(s) 22
GluI GCNGC 1 cut(s) 162
HapII CCGG 3 cut(s) 197, 295, 488
HhaI GCGC 1 cut(s) 23
Hin1II CATG 5 cut(s) 41, 53, 125, 191, 699
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 3 cut(s) 117, 202, 358
HpaII CCGG 3 cut(s) 197, 295, 488
HphI GGTGA 1 cut(s) 451
Hpy166II GTNNAC 4 cut(s) 194, 476, 478, 623
Hpy188I TCNGA 1 cut(s) 357
Hpy188III TCNNGA 2 cut(s) 583, 696
Hpy8I GTNNAC 4 cut(s) 194, 476, 478, 623
HpyAV CCTTC 2 cut(s) 473, 530
HpyCH4III ACNGT 3 cut(s) 337, 547, 627
HpyCH4V TGCA 3 cut(s) 113, 187, 618
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 130, 282
Hsp92II CATG 5 cut(s) 41, 53, 125, 191, 699
HspAI GCGC 1 cut(s) 21
KpnI GGTACC 1 cut(s) 692
Ksp22I TGATCA 1 cut(s) 552
Kzo9I GATC 3 cut(s) 228, 517, 552
LmnI GCTCC 1 cut(s) 465
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 1 cut(s) 362
MaeIII GTNAC 2 cut(s) 303, 439
MalI GATC 3 cut(s) 230, 519, 554
MboI GATC 3 cut(s) 228, 517, 552
MboII GAAGA 3 cut(s) 118, 341, 614
MflI RGATCY 1 cut(s) 517
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 400, 467
MlyI GAGTC 2 cut(s) 111, 196
MnlI CCTC 6 cut(s) 98, 106, 129, 277, 280, 565
MroXI GAANNNNTTC 2 cut(s) 219, 611
MseI TTAA 3 cut(s) 347, 365, 456
MspI CCGG 3 cut(s) 197, 295, 488
MspR9I CCNGG 2 cut(s) 180, 198
Mva1269I GAATGC 1 cut(s) 23
MvaI CCWGG 1 cut(s) 180
MvnI CGCG 1 cut(s) 437
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 198
NdeI CATATG 1 cut(s) 505
NdeII GATC 3 cut(s) 228, 517, 552
NlaIII CATG 5 cut(s) 41, 53, 125, 191, 699
NlaIV GGNNCC 2 cut(s) 519, 690
NmuCI GTSAC 2 cut(s) 303, 439
NsbI TGCGCA 1 cut(s) 22
PagI TCATGA 1 cut(s) 695
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 2 cut(s) 219, 611
PfeI GAWTC 1 cut(s) 358
PflFI GACNNNGTC 1 cut(s) 445
PflMI CCANNNNNTGG 1 cut(s) 450
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 2 cut(s) 111, 196
PpsI GAGTC 2 cut(s) 111, 196
PsiI TTATAA 1 cut(s) 411
Psp124BI GAGCTC 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 439
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 2 cut(s) 519, 690
PspPI GGNCC 1 cut(s) 194
PstI CTGCAG 1 cut(s) 620
PsuI RGATCY 1 cut(s) 517
PsyI GACNNNGTC 1 cut(s) 445
RsaI GTAC 4 cut(s) 434, 477, 544, 690
RsaNI GTAC 4 cut(s) 433, 476, 543, 689
SacI GAGCTC 1 cut(s) 260
SaqAI TTAA 3 cut(s) 347, 365, 456
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 3 cut(s) 228, 517, 552
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 2 cut(s) 111, 196
ScrFI CCNGG 2 cut(s) 180, 198
SduI GDGCHC 1 cut(s) 260
SetI ASST 8 cut(s) 109, 163, 236, 252, 260, 462, 648, 694
SfaNI GCATC 1 cut(s) 362
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 1 cut(s) 194
Sse9I AATT 2 cut(s) 400, 467
SsiI CCGC 3 cut(s) 437, 540, 595
SstI GAGCTC 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 178, 196
TaaI ACNGT 3 cut(s) 337, 547, 627
TasI AATT 2 cut(s) 400, 467
TatI WGTACW 1 cut(s) 475
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 3 cut(s) 347, 365, 456
Tru9I TTAA 3 cut(s) 347, 365, 456
TscAI CASTG 6 cut(s) 67, 138, 230, 312, 625, 664
TseFI GTSAC 2 cut(s) 303, 439
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 303, 439
TspDTI ATGAA 6 cut(s) 27, 228, 492, 517, 684, 687
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 6 cut(s) 67, 138, 230, 312, 625, 664
Tth111I GACNNNGTC 1 cut(s) 445
Van91I CCANNNNNTGG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 219, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.