Rorug01G0422900

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000139
Physical Location & Seq
Reverse (-)
52366684 .. 52368383
1700 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0422900.1

Sequence Viewer

Length: 681 bp
ATGAATGACTCGGTAGACAAGCTAGTGATCTTCCTAGCAAAGAGAGATGGCATAGACAAGCTTGTCAAGACGTTCCAATATGTCTCCAAGCTTGTGCACTGGCATGCCGAGTCCACTAACCCGAAGATGGCCGAGAGATTCAAGCAGTGGGAGGTTTCGTCTGGCCTTAGCCGAAAGGCTTTTCGGACTGGCAGGTTCCTCACCGGATTCAATGCAATGAGACGAAGCCCTGGATCAACGCCAACTCTTCGGTTCTTGGCTGTTCTTGCTAATGCTGGTGAGATGATATACTTCTTTTTTGACCATTTTCTTTGGTTGTCAAAAATTGGGACTTTGGACCCAAGTTTGGCTAGAAAGATGAGCTTCATTTCCGCATTTGGTGAGTCCTTTGGGTACATTTTCTTCATTATATCTGATTTTATCGCTCTAAAAGAAGGGCTTGAGGAAGAGAGGAAGGTTATGGGTTTGGAGGACAAGTCCATTGAGAAGAAGAATGAGAGCATAAGAAAGATTAGAAGTGATAGAGTGATGAGGTTAATGGCTGTAGCAGCTAATGTTGCAGACTTACTTATTGCAATTGCTGATATCGAGCCTAATCCATTCTGCAACCACACTGTGACTCTTGGGATTAGTGGATTGGTCTCTGCTTGGTCCGGTTGGTACAGAAATTGGCCCTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

226

Amino Acids

25.73

Weight (kDa)

9.54

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PEX11 PF05648 5 - 224 5.7e-58 Peroxisomal biogenesis factor 11 (PEX11)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 62
Acc36I ACCTGC 1 cut(s) 183
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 372
AclWI GGATC 1 cut(s) 241
AcoI YGGCCR 1 cut(s) 129
AdeI CACNNNGTG 1 cut(s) 616
AfaI GTAC 2 cut(s) 395, 662
AfiI CCNNNNNNNGG 2 cut(s) 127, 346
AgsI TTSAA 2 cut(s) 142, 211
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 5 cut(s) 22, 61, 91, 363, 551
AluI AGCT 5 cut(s) 22, 61, 91, 363, 551
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 88, 214, 646
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 1 cut(s) 241
AoxI GGCC 3 cut(s) 129, 163, 671
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 1 cut(s) 548
AspS9I GGNCC 3 cut(s) 337, 651, 672
AsuHPI GGTGA 3 cut(s) 193, 290, 392
AvaII GGWCC 2 cut(s) 337, 651
BaeGI GKGCMC 1 cut(s) 99
BarI GAAGNNNNNNTAC 2 cut(s) 386, 418
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 560
BccI CCATC 2 cut(s) 41, 121
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 3 cut(s) 88, 214, 646
BfaI CTAG 3 cut(s) 23, 35, 351
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 1 cut(s) 183
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
Bme1390I CCNGG 1 cut(s) 231
Bme18I GGWCC 2 cut(s) 337, 651
BmgT120I GGNCC 3 cut(s) 337, 651, 672
BmiI GGNNCC 2 cut(s) 197, 339
BmrFI CCNGG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 461
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 1 cut(s) 229
BsaWI WCCGGW 2 cut(s) 203, 653
BsaXI ACNNNNNCTCC 4 cut(s) 143, 173, 461, 491
Bsc4I CCNNNNNNNGG 2 cut(s) 127, 346
Bse1I ACTGG 2 cut(s) 104, 193
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 229
BseLI CCNNNNNNNGG 2 cut(s) 127, 346
BseMI GCAATG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 104, 193
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 1 cut(s) 560
BshFI GGCC 3 cut(s) 131, 165, 673
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 204, 654
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 127, 346
BsmAI GTCTC 3 cut(s) 88, 214, 646
BsmBI CGTCTC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 3 cut(s) 131, 165, 673
Bso31I GGTCTC 1 cut(s) 646
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 2 cut(s) 27, 233
BspACI CCGC 1 cut(s) 372
BspANI GGCC 3 cut(s) 131, 165, 673
BspLI GGNNCC 2 cut(s) 197, 339
BspMI ACCTGC 1 cut(s) 183
BspPI GGATC 1 cut(s) 241
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 104, 193
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 27, 233
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 616
Bst6I CTCTTC 2 cut(s) 252, 441
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 1 cut(s) 167
BstKTI GATC 2 cut(s) 30, 236
BstMAI GTCTC 3 cut(s) 88, 214, 646
BstMBI GATC 2 cut(s) 27, 233
BstMWI GCNNNNNNNGC 3 cut(s) 266, 548, 557
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 1 cut(s) 229
BstSFI CTRYAG 1 cut(s) 543
BstSLI GKGCMC 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 560
BsuRI GGCC 3 cut(s) 131, 165, 673
BtsI GCAGTG 1 cut(s) 152
BtsIMutI CAGTG 3 cut(s) 97, 152, 612
BveI ACCTGC 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 105
Cfr13I GGNCC 3 cut(s) 337, 651, 672
Csp6I GTAC 2 cut(s) 394, 661
CviAII CATG 1 cut(s) 104
CviQI GTAC 2 cut(s) 394, 661
DdeI CTNAG 1 cut(s) 167
DpnI GATC 2 cut(s) 29, 235
DpnII GATC 2 cut(s) 27, 233
DraIII CACNNNGTG 1 cut(s) 616
DrdI GACNNNNNNGTC 1 cut(s) 62
DseDI GACNNNNNNGTC 1 cut(s) 62
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 2 cut(s) 252, 441
EarI CTCTTC 2 cut(s) 252, 441
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 2 cut(s) 337, 651
EcoRII CCWGG 1 cut(s) 229
EcoRV GATATC 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 214
FaeI CATG 1 cut(s) 107
FaiI YATR 8 cut(s) 53, 81, 105, 289, 410, 461, 503, 679
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 423, 455
FaqI GGGAC 1 cut(s) 343
FatI CATG 1 cut(s) 103
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 549
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 3 cut(s) 23, 35, 351
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 3 cut(s) 131, 165, 673
HapII CCGG 2 cut(s) 204, 654
Hin1II CATG 1 cut(s) 107
HindIII AAGCTT 2 cut(s) 59, 89
HinfI GANTC 6 cut(s) 8, 110, 138, 207, 383, 619
HpaII CCGG 2 cut(s) 204, 654
HphI GGTGA 3 cut(s) 193, 290, 392
Hpy166II GTNNAC 3 cut(s) 16, 97, 114
Hpy188I TCNGA 2 cut(s) 186, 415
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 3 cut(s) 16, 97, 114
HpyAV CCTTC 2 cut(s) 428, 448
HpyCH4III ACNGT 1 cut(s) 616
HpyCH4IV ACGT 1 cut(s) 71
HpyCH4V TGCA 5 cut(s) 97, 215, 560, 575, 606
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 548, 557
HpyF3I CTNAG 1 cut(s) 167
HpySE526I ACGT 1 cut(s) 71
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 2 cut(s) 27, 233
LpnPI CCDG 9 cut(s) 85, 147, 174, 178, 216, 217, 243, 261, 667
Lsp1109I GCAGC 1 cut(s) 560
MaeI CTAG 3 cut(s) 23, 35, 351
MaeII ACGT 1 cut(s) 71
MaeIII GTNAC 1 cut(s) 616
MalI GATC 2 cut(s) 29, 235
MboI GATC 2 cut(s) 27, 233
MboII GAAGA 7 cut(s) 22, 136, 239, 394, 458, 499, 502
MfeI CAATTG 1 cut(s) 576
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 324, 576, 667
MlyI GAGTC 4 cut(s) 2, 119, 392, 613
MnlI CCTC 6 cut(s) 145, 209, 436, 444, 463, 525
MseI TTAA 1 cut(s) 536
MslI CAYNNNNRTG 1 cut(s) 102
MspI CCGG 2 cut(s) 204, 654
MspR9I CCNGG 1 cut(s) 231
MunI CAATTG 1 cut(s) 576
MvaI CCWGG 1 cut(s) 231
MwoI GCNNNNNNNGC 3 cut(s) 266, 548, 557
NdeII GATC 2 cut(s) 27, 233
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 2 cut(s) 197, 339
NmeAIII GCCGAG 2 cut(s) 133, 157
NmuCI GTSAC 1 cut(s) 616
NspI RCATGY 1 cut(s) 107
PaeI GCATGC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 138, 207
PkrI GCNGC 1 cut(s) 550
PleI GAGTC 4 cut(s) 2, 118, 391, 613
PpsI GAGTC 4 cut(s) 2, 118, 391, 613
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 2 cut(s) 197, 339
PspPI GGNCC 3 cut(s) 337, 651, 672
RsaI GTAC 2 cut(s) 395, 662
RsaNI GTAC 2 cut(s) 394, 661
RseI CAYNNNNRTG 1 cut(s) 102
SaqAI TTAA 1 cut(s) 536
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 2 cut(s) 27, 233
Sau96I GGNCC 3 cut(s) 337, 651, 672
SchI GAGTC 4 cut(s) 2, 119, 392, 613
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 543
SinI GGWCC 2 cut(s) 337, 651
SmiMI CAYNNNNRTG 1 cut(s) 102
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SphI GCATGC 1 cut(s) 107
Sse9I AATT 3 cut(s) 324, 576, 667
SsiI CCGC 1 cut(s) 372
SspMI CTAG 3 cut(s) 23, 35, 351
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 616
TaiI ACGT 1 cut(s) 74
TaqI TCGA 1 cut(s) 588
TasI AATT 3 cut(s) 324, 576, 667
TfiI GAWTC 2 cut(s) 138, 207
Tru1I TTAA 1 cut(s) 536
Tru9I TTAA 1 cut(s) 536
TscAI CASTG 3 cut(s) 104, 152, 619
TseFI GTSAC 1 cut(s) 616
TseI GCWGC 1 cut(s) 548
Tsp45I GTSAC 1 cut(s) 616
TspDTI ATGAA 3 cut(s) 17, 355, 394
TspRI CASTG 3 cut(s) 104, 152, 619
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 2 cut(s) 337, 651
XceI RCATGY 1 cut(s) 107
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 3 cut(s) 23, 35, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.