Rmu_sc0004250.1_g000018

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004250.1
OG0000139
Physical Location & Seq
Reverse (-)
83631 .. 84176
546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004250.1_g000018.1.cds

Sequence Viewer

Length: 546 bp
atgaagaagaaggagaatcagggtgatggtcacctcctccctgatgatattattgtggaaagtttaatacatgtgcccgtcaaaactttgattatttgcagtagcgtttcaagagggtggcgacatttaatatatggccctcagttctccaaaacccacttcaaattagcatctgagcagaaaacccttggtcagaccctccttgtctccactggcttggaaaccaacttgctgtctagggtcaaaaatcttaccttcccattcaagcaaaaagagcaggaggctatacaacctattggatcatgcaatggtttggtatgtgcaggtcaatggtcgttttctaataaaatttatagaagtttctctatctggaacccgtctactggatttttcagcaatttaccagaacacccagttcggggatcagagggagctaggaataaagggacgacttatgaacaatatggttttggttatgtttcgtcaatcgatgattacaaagttgttatcatacgtgatgtcgcttttgggaagcgaccaatttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

181

Amino Acids

20.31

Weight (kDa)

9.38

Isoelectric Point (pI)

33.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 380
AclWI GGATC 2 cut(s) 307, 430
AcsI RAATTY 1 cut(s) 348
AfiI CCNNNNNNNGG 3 cut(s) 383, 418, 419
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 111, 163, 265
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 2 cut(s) 307, 430
AoxI GGCC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 23, 35
BaeGI GKGCMC 1 cut(s) 78
BccI CCATC 1 cut(s) 20
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 2 cut(s) 237, 435
BfuAI ACCTGC 1 cut(s) 314
BmgT120I GGNCC 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 374
BmrI ACTGGG 1 cut(s) 407
BmsI GCATC 1 cut(s) 179
BmuI ACTGGG 1 cut(s) 407
Bsa29I ATCGAT 1 cut(s) 489
BsaAI YACGTR 1 cut(s) 515
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 3 cut(s) 383, 418, 419
Bse1I ACTGG 3 cut(s) 217, 388, 413
Bse3DI GCAATG 1 cut(s) 313
BseCI ATCGAT 1 cut(s) 489
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 3 cut(s) 383, 418, 419
BseMI GCAATG 1 cut(s) 313
BseMII CTCAG 2 cut(s) 155, 165
BseNI ACTGG 3 cut(s) 217, 388, 413
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 138
BshVI ATCGAT 1 cut(s) 489
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 3 cut(s) 383, 418, 419
BsmAI GTCTC 1 cut(s) 211
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 299, 422
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 154, 166
BspDI ATCGAT 1 cut(s) 489
BspLI GGNNCC 1 cut(s) 374
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 307, 430
BsrDI GCAATG 1 cut(s) 313
BsrI ACTGG 3 cut(s) 217, 388, 413
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 2 cut(s) 299, 422
BssT1I CCWWGG 1 cut(s) 187
BstBAI YACGTR 1 cut(s) 515
BstDEI CTNAG 2 cut(s) 141, 174
BstEII GGTNACC 1 cut(s) 29
BstKTI GATC 2 cut(s) 302, 425
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 2 cut(s) 299, 422
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNSI RCATGY 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 217
Bsu15I ATCGAT 1 cut(s) 489
BsuRI GGCC 1 cut(s) 138
BsuTUI ATCGAT 1 cut(s) 489
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 314
Cfr13I GGNCC 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 489
CviAII CATG 2 cut(s) 71, 303
CviJI RGCY 4 cut(s) 138, 216, 284, 434
CviKI_1 RGCY 4 cut(s) 138, 216, 284, 434
DdeI CTNAG 2 cut(s) 141, 174
DpnI GATC 2 cut(s) 301, 424
DpnII GATC 2 cut(s) 299, 422
Eco130I CCWWGG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 29
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 74, 306
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 70, 302
FblI GTMKAC 1 cut(s) 380
FspBI CTAG 2 cut(s) 237, 435
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 2 cut(s) 74, 306
HinfI GANTC 1 cut(s) 16
HphI GGTGA 2 cut(s) 23, 35
Hpy166II GTNNAC 1 cut(s) 381
Hpy188I TCNGA 3 cut(s) 175, 195, 427
Hpy188III TCNNGA 2 cut(s) 111, 370
Hpy8I GTNNAC 1 cut(s) 381
HpyAV CCTTC 2 cut(s) 4, 265
HpyCH4IV ACGT 1 cut(s) 514
HpyCH4V TGCA 3 cut(s) 99, 306, 323
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 2 cut(s) 141, 174
HpySE526I ACGT 1 cut(s) 514
Hsp92II CATG 2 cut(s) 74, 306
Kzo9I GATC 2 cut(s) 299, 422
LmnI GCTCC 1 cut(s) 431
LpnPI CCDG 9 cut(s) 5, 54, 198, 263, 309, 355, 369, 417, 426
LweI GCATC 1 cut(s) 179
MaeI CTAG 2 cut(s) 237, 435
MaeII ACGT 1 cut(s) 514
MaeIII GTNAC 1 cut(s) 29
MalI GATC 2 cut(s) 301, 424
MboI GATC 2 cut(s) 299, 422
MboII GAAGA 2 cut(s) 16, 19
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 4 cut(s) 164, 348, 397, 540
MnlI CCTC 7 cut(s) 44, 47, 107, 150, 209, 274, 421
MseI TTAA 3 cut(s) 65, 128, 544
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 2 cut(s) 299, 422
NlaIII CATG 2 cut(s) 74, 306
NlaIV GGNNCC 1 cut(s) 374
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 16
Ppu21I YACGTR 1 cut(s) 515
PscI ACATGT 1 cut(s) 70
PspEI GGTNACC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 374
PspPI GGNCC 1 cut(s) 137
SaqAI TTAA 3 cut(s) 65, 128, 544
Sau3AI GATC 2 cut(s) 299, 422
Sau96I GGNCC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 78
SetI ASST 6 cut(s) 36, 257, 295, 328, 436, 517
SfaNI GCATC 1 cut(s) 179
Sse9I AATT 4 cut(s) 164, 348, 397, 540
SspMI CTAG 2 cut(s) 237, 435
StyI CCWWGG 1 cut(s) 187
TaiI ACGT 1 cut(s) 517
TaqI TCGA 1 cut(s) 489
TasI AATT 4 cut(s) 164, 348, 397, 540
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 3 cut(s) 65, 128, 544
Tru9I TTAA 3 cut(s) 65, 128, 544
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 2 cut(s) 17, 471
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 348
XceI RCATGY 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 380
XspI CTAG 2 cut(s) 237, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.