FvH4_5g30990

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000139
Physical Location & Seq
Reverse (-)
21939341 .. 21941270
1930 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30990.t1

Sequence Viewer

Length: 756 bp
ATGTTGAAGGAGGAGCAGCTTGATCTGGATCTTCCTGAAGAAGTGGTAGTCAACATCCTCTGCCGGTTGCCGGTCAAGTCCTTGATACGCTTCACTTGTGTCTCAAAACGGTGGCGTTCTCTTATAATTTCCGACCACCTATTTGGCAACTCCCATTTTCAGCTGGCATCTCACCTCCGTCGAAATGTCCTCCTCGCCACCAACCCTACCTTGGTTGAAGAAGGTACACCTGGTACACCTTCTATGGAACCGTTACCCACTCGATTTCAATCTCTAGCAGATAGGTTCCCAATCAGGGAACTCACCTGCCCATCCGAGCTCAAGAGCAACATTGTAGTATTGGGCTCCTGCAATGGCTTGGTAGTTTCAGGCAAGTTCCAATATTCCATTGTACCTCAAGGCCGATTATACTGTGATTTTCTTATAAGTTTGGTAATCTGGAACCCGTCTAGTGGATTCTTTCGAAAAATACCTAGTCCAAGTTTTCTGATTGGGATGGAAAAATTGGCATATGAAAAACAGATTAGGTTTGTGAATCGTGTATATTATGGTTTTGGTCAAGTGTCGACCTCCGATGACTACAAACTTGTGGTGATACCCAAAATTGGTGATTTAATGGAAGTGCATGTGTTCTCAGTCAAAGCTAACTCTTGGAAAGTTGTTAAAACTCCTTGTGGCCATACCCCCTCTGGTCTAAAGAACGGGGGACACATTCGAATGGAGCAATTCATTGGGTCAGTCAACACGAACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

252

Amino Acids

28.26

Weight (kDa)

9.15

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 9 - 47 5.3e-12 F-box domain
F-box-like PF12937 10 - 48 5.9e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 125, 425
AarI CACCTGC 1 cut(s) 314
Acc36I ACCTGC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 566
AclWI GGATC 1 cut(s) 36
AcoI YGGCCR 1 cut(s) 676
AcuI CTGAAG 1 cut(s) 57
AfaI GTAC 3 cut(s) 226, 235, 393
AfiI CCNNNNNNNGG 5 cut(s) 70, 211, 295, 452, 605
AgsI TTSAA 3 cut(s) 7, 218, 269
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 4 cut(s) 19, 163, 319, 644
AluI AGCT 4 cut(s) 19, 163, 319, 644
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 1 cut(s) 106
AlwI GGATC 1 cut(s) 36
AoxI GGCC 2 cut(s) 400, 676
ApeKI GCWGC 1 cut(s) 16
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AsuHPI GGTGA 4 cut(s) 164, 295, 604, 620
AsuII TTCGAA 2 cut(s) 463, 715
BalI TGGCCA 1 cut(s) 678
BanII GRGCYC 2 cut(s) 321, 347
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 1 cut(s) 28
BccI CCATC 2 cut(s) 319, 490
BciT130I CCWGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 106
BfaI CTAG 3 cut(s) 275, 450, 474
BfuAI ACCTGC 1 cut(s) 314
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 4 cut(s) 249, 287, 346, 443
BmrFI CCNGG 1 cut(s) 231
BmsI GCATC 1 cut(s) 176
Bpu14I TTCGAA 2 cut(s) 463, 715
BpuEI CTTGAG 2 cut(s) 305, 381
BsaBI GATNNNNATC 2 cut(s) 27, 268
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 211, 295, 452, 605
Bse118I RCCGGY 2 cut(s) 63, 70
Bse1I ACTGG 1 cut(s) 751
Bse3DI GCAATG 1 cut(s) 358
Bse8I GATNNNNATC 2 cut(s) 27, 268
BseBI CCWGG 1 cut(s) 231
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 3 cut(s) 54, 311, 501
BseJI GATNNNNATC 2 cut(s) 27, 268
BseLI CCNNNNNNNGG 5 cut(s) 70, 211, 295, 452, 605
BseMI GCAATG 1 cut(s) 358
BseMII CTCAG 1 cut(s) 648
BseNI ACTGG 1 cut(s) 751
BseRI GAGGAG 2 cut(s) 26, 182
BseXI GCAGC 1 cut(s) 28
BshFI GGCC 2 cut(s) 402, 678
BsiHKAI GWGCWC 1 cut(s) 321
BsiSI CCGG 2 cut(s) 64, 71
BslFI GGGAC 1 cut(s) 720
BslI CCNNNNNNNGG 5 cut(s) 70, 211, 295, 452, 605
BsmAI GTCTC 1 cut(s) 106
BsmFI GGGAC 1 cut(s) 720
BsnI GGCC 2 cut(s) 402, 678
Bsp119I TTCGAA 2 cut(s) 463, 715
Bsp1286I GDGCHC 2 cut(s) 321, 347
Bsp143I GATC 2 cut(s) 22, 28
BspANI GGCC 2 cut(s) 402, 678
BspCNI CTCAG 1 cut(s) 647
BspLI GGNNCC 4 cut(s) 249, 287, 346, 443
BspMI ACCTGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 36
BspT104I TTCGAA 2 cut(s) 463, 715
BsrDI GCAATG 1 cut(s) 358
BsrFI RCCGGY 2 cut(s) 63, 70
BsrI ACTGG 1 cut(s) 751
BssAI RCCGGY 2 cut(s) 63, 70
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 22, 28
BssT1I CCWWGG 1 cut(s) 210
Bst2UI CCWGG 1 cut(s) 231
Bst4CI ACNGT 3 cut(s) 111, 252, 413
BstBI TTCGAA 2 cut(s) 463, 715
BstC8I GCNNGC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 634
BstF5I GGATG 3 cut(s) 54, 311, 501
BstKTI GATC 2 cut(s) 25, 31
BstMAI GTCTC 1 cut(s) 106
BstMBI GATC 2 cut(s) 22, 28
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 629
BstSCI CCNGG 1 cut(s) 229
BstV1I GCAGC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 28
BstXI CCANNNNNNTGG 1 cut(s) 143
BstYI RGATCY 1 cut(s) 28
BsuRI GGCC 2 cut(s) 402, 678
BtsCI GGATG 3 cut(s) 54, 311, 501
BveI ACCTGC 1 cut(s) 314
Cac8I GCNNGC 1 cut(s) 165
Cfr10I RCCGGY 2 cut(s) 63, 70
CsiI ACCWGGT 1 cut(s) 229
Csp6I GTAC 3 cut(s) 225, 234, 392
CviAII CATG 1 cut(s) 626
CviJI RGCY 8 cut(s) 19, 163, 319, 345, 357, 402, 644, 678
CviKI_1 RGCY 8 cut(s) 19, 163, 319, 345, 357, 402, 644, 678
CviQI GTAC 3 cut(s) 225, 234, 392
DdeI CTNAG 1 cut(s) 634
DpnI GATC 2 cut(s) 24, 30
DpnII GATC 2 cut(s) 22, 28
EaeI YGGCCR 1 cut(s) 676
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 210
Eco24I GRGCYC 2 cut(s) 321, 347
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 57
EcoICRI GAGCTC 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 229
EcoT14I CCWWGG 1 cut(s) 210
EcoT38I GRGCYC 2 cut(s) 321, 347
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 629
FaqI GGGAC 1 cut(s) 720
FatI CATG 1 cut(s) 625
FauNDI CATATG 1 cut(s) 511
FblI GTMKAC 1 cut(s) 566
Fnu4HI GCNGC 1 cut(s) 17
FokI GGATG 3 cut(s) 41, 298, 508
FriOI GRGCYC 2 cut(s) 321, 347
Fsp4HI GCNGC 1 cut(s) 17
FspBI CTAG 3 cut(s) 275, 450, 474
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 402, 678
HapII CCGG 2 cut(s) 64, 71
Hin1II CATG 1 cut(s) 629
HincII GTYRAC 3 cut(s) 52, 567, 742
HindII GTYRAC 3 cut(s) 52, 567, 742
HinfI GANTC 2 cut(s) 456, 535
HpaII CCGG 2 cut(s) 64, 71
HphI GGTGA 4 cut(s) 164, 295, 604, 620
Hpy166II GTNNAC 5 cut(s) 52, 227, 236, 567, 742
Hpy188I TCNGA 4 cut(s) 133, 316, 489, 574
Hpy188III TCNNGA 4 cut(s) 26, 35, 322, 439
Hpy8I GTNNAC 5 cut(s) 52, 227, 236, 567, 742
Hpy99I CGWCG 1 cut(s) 183
HpyAV CCTTC 2 cut(s) 215, 249
HpyCH4III ACNGT 3 cut(s) 111, 252, 413
HpyCH4V TGCA 2 cut(s) 351, 625
HpyF3I CTNAG 1 cut(s) 634
Hsp92II CATG 1 cut(s) 629
Kzo9I GATC 2 cut(s) 22, 28
LmnI GCTCC 3 cut(s) 13, 350, 721
Lsp1109I GCAGC 1 cut(s) 28
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 1 cut(s) 229
MaeI CTAG 3 cut(s) 275, 450, 474
MaeIII GTNAC 1 cut(s) 252
MalI GATC 2 cut(s) 24, 30
MboI GATC 2 cut(s) 22, 28
MboII GAAGA 3 cut(s) 23, 50, 230
MflI RGATCY 1 cut(s) 28
MhlI GDGCHC 2 cut(s) 321, 347
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 4 cut(s) 126, 503, 603, 725
MluNI TGGCCA 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 8 cut(s) 4, 68, 185, 200, 203, 405, 580, 697
Mox20I TGGCCA 1 cut(s) 678
MscI TGGCCA 1 cut(s) 678
MseI TTAA 2 cut(s) 614, 663
MslI CAYNNNNRTG 1 cut(s) 716
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 2 cut(s) 64, 71
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NdeI CATATG 1 cut(s) 511
NdeII GATC 2 cut(s) 22, 28
NlaIII CATG 1 cut(s) 629
NlaIV GGNNCC 4 cut(s) 249, 287, 346, 443
NspI RCATGY 1 cut(s) 629
NspV TTCGAA 2 cut(s) 463, 715
PaqCI CACCTGC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 456, 535
PkrI GCNGC 1 cut(s) 18
PsiI TTATAA 2 cut(s) 125, 425
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 4 cut(s) 249, 287, 346, 443
PsuI RGATCY 1 cut(s) 28
PvuII CAGCTG 1 cut(s) 163
RsaI GTAC 3 cut(s) 226, 235, 393
RsaNI GTAC 3 cut(s) 225, 234, 392
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 321
SalI GTCGAC 1 cut(s) 565
SaqAI TTAA 2 cut(s) 614, 663
SatI GCNGC 1 cut(s) 17
Sau3AI GATC 2 cut(s) 22, 28
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 2 cut(s) 321, 347
SexAI ACCWGGT 1 cut(s) 229
SfaNI GCATC 1 cut(s) 176
SfuI TTCGAA 2 cut(s) 463, 715
SmiMI CAYNNNNRTG 1 cut(s) 716
SmlI CTYRAG 2 cut(s) 320, 396
SmoI CTYRAG 2 cut(s) 320, 396
Sse9I AATT 4 cut(s) 126, 503, 603, 725
SspI AATATT 1 cut(s) 383
SspMI CTAG 3 cut(s) 275, 450, 474
SstI GAGCTC 1 cut(s) 321
StyD4I CCNGG 1 cut(s) 229
StyI CCWWGG 1 cut(s) 210
TaaI ACNGT 3 cut(s) 111, 252, 413
TaqI TCGA 5 cut(s) 181, 262, 463, 566, 715
TasI AATT 4 cut(s) 126, 503, 603, 725
TfiI GAWTC 2 cut(s) 456, 535
Tru1I TTAA 2 cut(s) 614, 663
Tru9I TTAA 2 cut(s) 614, 663
TseI GCWGC 1 cut(s) 16
TspDTI ATGAA 2 cut(s) 528, 718
TspGWI ACGGA 1 cut(s) 167
XceI RCATGY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 2 cut(s) 208, 686
XmiI GTMKAC 1 cut(s) 566
XspI CTAG 3 cut(s) 275, 450, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.