Rmu_sc0002627.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002627.1
OG0000139
Physical Location & Seq
Reverse (-)
8439 .. 9266
828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002627.1_g000001.1.cds

Sequence Viewer

Length: 828 bp
atgttgacgaaggaggagcagcatgataatgatgtccacctccctgaacatgttgtactcaacattctctgccggtttccattcaagtccttgatccgcttcacttgtgtctctaaacgctggcgttctcttatcatttctgatccccaatttgccaactcccatttccgactagcagcatctcagctccgtcgaaatgtcctcatctccacccaccctatcttgatttcaaaaggtacactcggaacaacccatactatgttaccctctcgatttcactccttagacgataacttttcggtcagaagtctcaccttcccatccgagccgaatcgcgacattgtagtaatgggctcctgcaatggtttggtggttttaggcaagttctatcgccatgctttggtacctctaggccaattatattgtgattattataaaactttgggaatctggaacccatccactggattcttccacaacattcctagtccaagttttcagatagggatgataaaattgacggatgaaaagaaagaaaggcacatgagctgtgtatattatggttttggtcaagtgtcggcctccggtgactacaaatttgtagtgataccaaactttggtggttttatggaagtacaggtgttctcagtcagagccaactgttggaaagttgttaaagctccttacttgtccccataccgcctctggtctaaacaatgggggacttattcaaatggagccgttcatctgtctatgcttttgatctggcaaatgaggagtttcgggaaatgccattacctgttcttagccacaatgaagatgacatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

275

Amino Acids

31.62

Weight (kDa)

9.6

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 435
Acc65I GGTACC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 403
AccB7I CCANNNNNTGG 4 cut(s) 400, 464, 617, 663
AccII CGCG 1 cut(s) 336
AciI CCGC 2 cut(s) 97, 700
AclWI GGATC 2 cut(s) 88, 137
AcsI RAATTY 1 cut(s) 596
AfaI GTAC 4 cut(s) 57, 238, 405, 636
AfiI CCNNNNNNNGG 4 cut(s) 400, 464, 617, 663
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 3 cut(s) 85, 231, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 3 cut(s) 187, 549, 680
AluI AGCT 3 cut(s) 187, 549, 680
Alw26I GTCTC 2 cut(s) 115, 314
AlwI GGATC 2 cut(s) 88, 137
AoxI GGCC 2 cut(s) 412, 579
ApeKI GCWGC 2 cut(s) 19, 176
ApoI RAATTY 1 cut(s) 596
ArsI GACNNNNNNTTYG 2 cut(s) 581, 613
Asp718I GGTACC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 304, 599
BanI GGYRCC 1 cut(s) 403
BanII GRGCYC 1 cut(s) 356
BbvI GCAGC 2 cut(s) 31, 188
BccI CCATC 2 cut(s) 328, 466
BceAI ACGGC 1 cut(s) 725
BcoDI GTCTC 2 cut(s) 115, 314
BfaI CTAG 3 cut(s) 173, 410, 486
BisI GCNGC 2 cut(s) 20, 177
BlsI GCNGC 2 cut(s) 21, 178
BmiI GGNNCC 4 cut(s) 355, 405, 455, 739
BmsI GCATC 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 584
Bsc4I CCNNNNNNNGG 4 cut(s) 400, 464, 617, 663
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 1 cut(s) 469
Bse3DI GCAATG 1 cut(s) 367
BseGI GGATG 4 cut(s) 320, 458, 513, 529
BseLI CCNNNNNNNGG 4 cut(s) 400, 464, 617, 663
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 197, 660
BseNI ACTGG 1 cut(s) 469
BseRI GAGGAG 2 cut(s) 29, 790
BseXI GCAGC 2 cut(s) 31, 188
Bsh1236I CGCG 1 cut(s) 336
BshFI GGCC 2 cut(s) 414, 581
BshNI GGYRCC 1 cut(s) 403
BsiSI CCGG 2 cut(s) 73, 585
BslFI GGGAC 2 cut(s) 676, 736
BslI CCNNNNNNNGG 4 cut(s) 400, 464, 617, 663
BsmAI GTCTC 2 cut(s) 115, 314
BsmFI GGGAC 2 cut(s) 676, 736
BsnI GGCC 2 cut(s) 414, 581
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 3 cut(s) 93, 142, 762
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 2 cut(s) 97, 700
BspANI GGCC 2 cut(s) 414, 581
BspCNI CTCAG 2 cut(s) 196, 659
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 4 cut(s) 355, 405, 455, 739
BspPI GGATC 2 cut(s) 88, 137
BspT107I GGYRCC 1 cut(s) 403
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 1 cut(s) 469
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 3 cut(s) 93, 142, 762
Bst4CI ACNGT 1 cut(s) 662
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 4 cut(s) 183, 283, 646, 805
BstF5I GGATG 4 cut(s) 320, 458, 513, 529
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 3 cut(s) 96, 145, 765
BstMAI GTCTC 2 cut(s) 115, 314
BstMBI GATC 3 cut(s) 93, 142, 762
BstNSI RCATGY 1 cut(s) 53
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 2 cut(s) 31, 188
BsuRI GGCC 2 cut(s) 414, 581
BtsCI GGATG 4 cut(s) 320, 458, 513, 529
BtsIMutI CAGTG 1 cut(s) 462
BtuMI TCGCGA 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 72
Csp6I GTAC 4 cut(s) 56, 237, 404, 635
CviAII CATG 5 cut(s) 23, 50, 395, 544, 825
CviQI GTAC 4 cut(s) 56, 237, 404, 635
DdeI CTNAG 4 cut(s) 183, 283, 646, 805
DpnI GATC 3 cut(s) 95, 144, 764
DpnII GATC 3 cut(s) 93, 142, 762
Eco24I GRGCYC 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 5 cut(s) 26, 53, 398, 547, 828
FaqI GGGAC 2 cut(s) 676, 736
FatI CATG 5 cut(s) 22, 49, 394, 543, 824
Fnu4HI GCNGC 2 cut(s) 20, 177
FokI GGATG 4 cut(s) 307, 445, 520, 536
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 20, 177
FspBI CTAG 3 cut(s) 173, 410, 486
GluI GCNGC 2 cut(s) 20, 177
HaeIII GGCC 2 cut(s) 414, 581
HapII CCGG 2 cut(s) 73, 585
Hin1II CATG 5 cut(s) 26, 53, 398, 547, 828
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 331, 447, 468
HpaII CCGG 2 cut(s) 73, 585
HphI GGTGA 2 cut(s) 304, 599
Hpy166II GTNNAC 3 cut(s) 6, 37, 239
Hpy188I TCNGA 7 cut(s) 142, 170, 245, 305, 325, 501, 653
Hpy188III TCNNGA 5 cut(s) 223, 270, 335, 451, 784
Hpy8I GTNNAC 3 cut(s) 6, 37, 239
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 4, 325
HpyCH4III ACNGT 1 cut(s) 662
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 4 cut(s) 183, 283, 646, 805
Hsp92II CATG 5 cut(s) 26, 53, 398, 547, 828
KpnI GGTACC 1 cut(s) 407
Kzo9I GATC 3 cut(s) 93, 142, 762
LmnI GCTCC 5 cut(s) 16, 192, 359, 685, 737
Lsp1109I GCAGC 2 cut(s) 31, 188
LweI GCATC 1 cut(s) 188
MaeI CTAG 3 cut(s) 173, 410, 486
MaeIII GTNAC 2 cut(s) 261, 587
MalI GATC 3 cut(s) 95, 144, 764
MboI GATC 3 cut(s) 93, 142, 762
MboII GAAGA 1 cut(s) 463
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 4 cut(s) 149, 416, 515, 596
MmeI TCCRAC 2 cut(s) 193, 644
MnlI CCTC 8 cut(s) 7, 50, 212, 277, 417, 592, 713, 768
MseI TTAA 1 cut(s) 675
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 2 cut(s) 73, 585
MvnI CGCG 1 cut(s) 336
NdeII GATC 3 cut(s) 93, 142, 762
NlaIII CATG 5 cut(s) 26, 53, 398, 547, 828
NlaIV GGNNCC 4 cut(s) 355, 405, 455, 739
NmuCI GTSAC 1 cut(s) 587
NruI TCGCGA 1 cut(s) 336
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 3 cut(s) 331, 447, 468
PflMI CCANNNNNTGG 4 cut(s) 400, 464, 617, 663
PkrI GCNGC 2 cut(s) 21, 178
PscI ACATGT 1 cut(s) 49
PsiI TTATAA 1 cut(s) 435
PspN4I GGNNCC 4 cut(s) 355, 405, 455, 739
PsrI GAACNNNNNNTAC 4 cut(s) 39, 71, 238, 270
RruI TCGCGA 1 cut(s) 336
RsaI GTAC 4 cut(s) 57, 238, 405, 636
RsaNI GTAC 4 cut(s) 56, 237, 404, 635
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 675
SatI GCNGC 2 cut(s) 20, 177
Sau3AI GATC 3 cut(s) 93, 142, 762
SduI GDGCHC 1 cut(s) 356
SetI ASST 9 cut(s) 42, 189, 238, 317, 409, 551, 642, 682, 801
SfaNI GCATC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 27
Sse9I AATT 4 cut(s) 149, 416, 515, 596
SsiI CCGC 2 cut(s) 97, 700
SspMI CTAG 3 cut(s) 173, 410, 486
TaaI ACNGT 1 cut(s) 662
TaqI TCGA 2 cut(s) 193, 271
TaqII GACCGA 1 cut(s) 289
TasI AATT 4 cut(s) 149, 416, 515, 596
TatI WGTACW 2 cut(s) 55, 634
TfiI GAWTC 3 cut(s) 331, 447, 468
Tru1I TTAA 1 cut(s) 675
Tru9I TTAA 1 cut(s) 675
TscAI CASTG 1 cut(s) 469
TseFI GTSAC 1 cut(s) 587
TseI GCWGC 2 cut(s) 19, 176
Tsp45I GTSAC 1 cut(s) 587
TspDTI ATGAA 2 cut(s) 540, 734
TspGWI ACGGA 2 cut(s) 179, 536
TspRI CASTG 1 cut(s) 469
Van91I CCANNNNNTGG 4 cut(s) 400, 464, 617, 663
XapI RAATTY 1 cut(s) 596
XceI RCATGY 1 cut(s) 53
XcmI CCANNNNNNNNNTGG 1 cut(s) 702
XspI CTAG 3 cut(s) 173, 410, 486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.