RchiOBHm_Chr7g0226071

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000139
Physical Location & Seq
Reverse (-)
49117860 .. 49118596
737 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20248

Sequence Viewer

Length: 423 bp
ATGCCATTGCCTGTTCTTAGCCACAGCGAAGATGACATGAACAGGATTCGAATTACAACTCCGGTTCTAGTAGGAGGATGTCTTTGTGTGATGTTTCAGGATATTAATGAGTATAGTGAATTTTGGGCGATGAAAGAGTATGGGGTGCCTGCATCTTGGGTTAAACTCTTTCGTTTAAATGTACGTGATTTACCAGATATGCTTGCTCCATTCTTTAGGCGCTATTTCTGGAATCCTATTTTCGTTGCAGAAGACGGTACATTTTTGTTCCAAATGAATAAGGAGGAGTTGGTCAGGATTAAATGCTATAAAGAAGAGAAGCTAGTCTGCACCGGCCGGTACAGTCTTGAGGAGGTGCCGGGGTGTGGGTGTACAATTGATGCCATTTTGTATGATGAAACTCTTGTTTCGGTACCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

140

Amino Acids

16.29

Weight (kDa)

4.76

Isoelectric Point (pI)

50.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 412
AccB1I GGYRCC 3 cut(s) 145, 355, 412
AcoI YGGCCR 1 cut(s) 334
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 5 cut(s) 183, 259, 341, 373, 414
AfiI CCNNNNNNNGG 1 cut(s) 365
AluBI AGCT 1 cut(s) 322
AluI AGCT 1 cut(s) 322
AoxI GGCC 1 cut(s) 334
ApoI RAATTY 1 cut(s) 119
AseI ATTAAT 1 cut(s) 105
Asp718I GGTACC 1 cut(s) 412
AspLEI GCGC 1 cut(s) 222
AsuC2I CCSGG 1 cut(s) 360
AsuII TTCGAA 1 cut(s) 49
BanI GGYRCC 3 cut(s) 145, 355, 412
BbsI GAAGAC 1 cut(s) 258
BcnI CCSGG 1 cut(s) 360
BfaI CTAG 2 cut(s) 68, 323
BfoI RGCGCY 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 360
BmiI GGNNCC 3 cut(s) 147, 357, 414
BmrFI CCNGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 161, 370
BpiI GAAGAC 1 cut(s) 258
Bpu14I TTCGAA 1 cut(s) 49
BpuEI CTTGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 360
BsaAI YACGTR 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 359
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 1 cut(s) 365
Bse118I RCCGGY 2 cut(s) 332, 336
Bse3DI GCAATG 1 cut(s) 5
BseDI CCNNGG 1 cut(s) 359
BseGI GGATG 1 cut(s) 83
BseLI CCNNNNNNNGG 1 cut(s) 365
BseMI GCAATG 1 cut(s) 5
BseRI GAGGAG 2 cut(s) 299, 365
BseX3I CGGCCG 1 cut(s) 334
BsgI GTGCAG 1 cut(s) 313
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 3 cut(s) 145, 355, 412
BsiEI CGRYCG 1 cut(s) 337
BsiSI CCGG 4 cut(s) 62, 333, 337, 359
BslI CCNNNNNNNGG 1 cut(s) 365
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 49
Bsp1407I TGTACA 1 cut(s) 371
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 3 cut(s) 147, 357, 414
BspT104I TTCGAA 1 cut(s) 49
BspT107I GGYRCC 3 cut(s) 145, 355, 412
BsrDI GCAATG 1 cut(s) 5
BsrFI RCCGGY 2 cut(s) 332, 336
BsrGI TGTACA 1 cut(s) 371
BssAI RCCGGY 2 cut(s) 332, 336
BssECI CCNNGG 1 cut(s) 359
Bst4CI ACNGT 2 cut(s) 257, 344
Bst6I CTCTTC 1 cut(s) 309
BstAUI TGTACA 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 49
BstC8I GCNNGC 2 cut(s) 150, 204
BstDEI CTNAG 1 cut(s) 17
BstF5I GGATG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 223
BstHHI GCGC 1 cut(s) 222
BstMCI CGRYCG 1 cut(s) 337
BstSCI CCNGG 1 cut(s) 358
BstV2I GAAGAC 1 cut(s) 258
BstZI CGGCCG 1 cut(s) 334
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 143
BtsCI GGATG 1 cut(s) 83
Cac8I GCNNGC 2 cut(s) 150, 204
CfoI GCGC 1 cut(s) 222
Cfr10I RCCGGY 2 cut(s) 332, 336
Csp6I GTAC 5 cut(s) 182, 258, 340, 372, 413
CviAII CATG 1 cut(s) 37
CviJI RGCY 3 cut(s) 21, 322, 336
CviKI_1 RGCY 3 cut(s) 21, 322, 336
CviQI GTAC 5 cut(s) 182, 258, 340, 372, 413
DdeI CTNAG 1 cut(s) 17
DraI TTTAAA 1 cut(s) 177
EaeI YGGCCR 1 cut(s) 334
EagI CGGCCG 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EclXI CGGCCG 1 cut(s) 334
Eco52I CGGCCG 1 cut(s) 334
FaeI CATG 1 cut(s) 40
FaiI YATR 6 cut(s) 38, 114, 141, 200, 309, 393
FatI CATG 1 cut(s) 36
FokI GGATG 1 cut(s) 90
FspBI CTAG 2 cut(s) 68, 323
GlaI GCGC 1 cut(s) 221
HaeII RGCGCY 1 cut(s) 223
HaeIII GGCC 1 cut(s) 336
HapII CCGG 4 cut(s) 62, 333, 337, 359
HhaI GCGC 1 cut(s) 222
Hin1II CATG 1 cut(s) 40
Hin6I GCGC 1 cut(s) 220
HinP1I GCGC 1 cut(s) 220
HinfI GANTC 2 cut(s) 46, 232
HpaII CCGG 4 cut(s) 62, 333, 337, 359
Hpy166II GTNNAC 1 cut(s) 372
Hpy188III TCNNGA 4 cut(s) 98, 229, 295, 347
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 257, 344
HpyCH4IV ACGT 1 cut(s) 184
HpyCH4V TGCA 3 cut(s) 152, 248, 330
HpyF3I CTNAG 1 cut(s) 17
HpySE526I ACGT 1 cut(s) 184
Hsp92II CATG 1 cut(s) 40
HspAI GCGC 1 cut(s) 220
KpnI GGTACC 1 cut(s) 416
LmnI GCTCC 1 cut(s) 211
LweI GCATC 2 cut(s) 161, 370
MaeI CTAG 2 cut(s) 68, 323
MaeII ACGT 1 cut(s) 184
MboII GAAGA 3 cut(s) 41, 263, 326
MfeI CAATTG 1 cut(s) 375
MluCI AATT 3 cut(s) 51, 119, 375
MnlI CCTC 4 cut(s) 68, 277, 343, 346
MseI TTAA 4 cut(s) 105, 162, 176, 300
MspI CCGG 4 cut(s) 62, 333, 337, 359
MspR9I CCNGG 1 cut(s) 360
MunI CAATTG 1 cut(s) 375
NciI CCSGG 1 cut(s) 360
NlaIII CATG 1 cut(s) 40
NlaIV GGNNCC 3 cut(s) 147, 357, 414
NspV TTCGAA 1 cut(s) 49
PfeI GAWTC 2 cut(s) 46, 232
Ppu21I YACGTR 1 cut(s) 185
PshBI ATTAAT 1 cut(s) 105
PspN4I GGNNCC 3 cut(s) 147, 357, 414
RsaI GTAC 5 cut(s) 183, 259, 341, 373, 414
RsaNI GTAC 5 cut(s) 182, 258, 340, 372, 413
SaqAI TTAA 4 cut(s) 105, 162, 176, 300
ScrFI CCNGG 1 cut(s) 360
SetI ASST 4 cut(s) 187, 324, 357, 418
SfaNI GCATC 2 cut(s) 161, 370
SfuI TTCGAA 1 cut(s) 49
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 3 cut(s) 51, 119, 375
SspMI CTAG 2 cut(s) 68, 323
StyD4I CCNGG 1 cut(s) 358
TaaI ACNGT 2 cut(s) 257, 344
TaiI ACGT 1 cut(s) 187
TaqI TCGA 1 cut(s) 49
TasI AATT 3 cut(s) 51, 119, 375
TatI WGTACW 1 cut(s) 371
TfiI GAWTC 2 cut(s) 46, 232
Tru1I TTAA 4 cut(s) 105, 162, 176, 300
Tru9I TTAA 4 cut(s) 105, 162, 176, 300
TspDTI ATGAA 4 cut(s) 53, 146, 290, 411
VspI ATTAAT 1 cut(s) 105
XapI RAATTY 1 cut(s) 119
XspI CTAG 2 cut(s) 68, 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.