FvH4_3g42470

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Reverse (-)
35422990 .. 35423712
723 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42470.t1

Sequence Viewer

Length: 723 bp
ATGTTAGTTGGTTTTGGTTATGCCTCATCCACTGATGACTACAAACTTGTTTTAGTATCCCCTGTTAAAGATTTTGGTTATGCAGTTGACGTCAATATCTTCATATTCTCTATGAGAGCTAATTCTTGGAAGCTCAAGAAAGTTTCTCTCTGGCCATCCGGGAGCTACAGACCCTACGCTCCTACACACCACGGAACTCTTTCAAATGAAGCAATCCATTGGGTTAACAGAGACCATAATTATAAGGAGTTTGATGTGTGTGCATTTGATTTGGAGAAGGAGGAGTTTCGTAAAGTGCCTGCTCCTCGTTTTAACCAAAATGATAATCCTCATGTTAACAGAAAAATGCAGACTATTGATCATTCAGGAGGATGCCTCTGCCTTTGGTCTGAGACTTTTCAAAAACGGTGTTGGTATAGTGAACTATGGATGATGAGAGATTATGGGGTGCGTAATTCATGGATGAAGCCTTTTAAATTTAGGAGGGATGTTGACATACGGAATGTTCTTGATCTTGATGCACTTAGTTTTTGGGAGCCATGTTTGGTTATAGAAAGTGGTGCAATTGTGATCAAGGTTGACAACAAGGAGTTGGTAAGGATTGAATGCCATAAAAAGAAGAAGCCGGTCTGCAGTGGCCGATATAGGCTCCAGGAGGCGCCTGGGTGTAAGCATTTGTTAGGCGCAACTTCATACGATGAGACTCTAGTTTCTCTATCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

241

Amino Acids

27.96

Weight (kDa)

8.7

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 5 - 156 2.7e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AatII GACGTC 1 cut(s) 93
AccB1I GGYRCC 1 cut(s) 658
AcoI YGGCCR 2 cut(s) 152, 637
AcsI RAATTY 1 cut(s) 476
AcyI GRCGYC 2 cut(s) 90, 659
AgsI TTSAA 3 cut(s) 204, 401, 605
AjnI CCWGG 2 cut(s) 651, 661
AluBI AGCT 3 cut(s) 119, 133, 165
AluI AGCT 3 cut(s) 119, 133, 165
Alw26I GTCTC 3 cut(s) 225, 386, 695
AoxI GGCC 2 cut(s) 152, 637
ApoI RAATTY 1 cut(s) 476
Asp700I GAANNNNTTC 1 cut(s) 199
AspLEI GCGC 2 cut(s) 661, 686
AsuC2I CCSGG 1 cut(s) 160
BalI TGGCCA 1 cut(s) 154
BanI GGYRCC 1 cut(s) 658
BccI CCATC 1 cut(s) 163
BciT130I CCWGG 2 cut(s) 653, 663
BciVI GTATCC 1 cut(s) 67
BclI TGATCA 2 cut(s) 358, 570
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 3 cut(s) 225, 386, 695
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 2 cut(s) 166, 631
BfoI RGCGCY 1 cut(s) 662
BfuI GTATCC 1 cut(s) 67
Bme1390I CCNGG 3 cut(s) 160, 653, 663
BmiI GGNNCC 3 cut(s) 537, 650, 660
BmrFI CCNGG 3 cut(s) 160, 653, 663
BmsI GCATC 2 cut(s) 362, 508
BplI GAGNNNNNCTC 2 cut(s) 360, 392
BpmI CTGGAG 1 cut(s) 635
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 2 cut(s) 90, 659
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 2 cut(s) 190, 662
Bse118I RCCGGY 1 cut(s) 625
BseBI CCWGG 2 cut(s) 653, 663
BseDI CCNNGG 2 cut(s) 190, 662
BseGI GGATG 6 cut(s) 26, 155, 377, 435, 468, 493
BseMII CTCAG 1 cut(s) 381
BseRI GAGGAG 2 cut(s) 294, 296
BshFI GGCC 2 cut(s) 154, 639
BshNI GGYRCC 1 cut(s) 658
BsiSI CCGG 2 cut(s) 159, 626
BsmAI GTCTC 3 cut(s) 225, 386, 695
BsmI GAATGC 1 cut(s) 611
BsnI GGCC 2 cut(s) 154, 639
Bso31I GGTCTC 1 cut(s) 225
Bsp143I GATC 3 cut(s) 358, 511, 570
BspANI GGCC 2 cut(s) 154, 639
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 3 cut(s) 537, 650, 660
BspMAI CTGCAG 1 cut(s) 635
BspT107I GGYRCC 1 cut(s) 658
BspTNI GGTCTC 1 cut(s) 225
BsrFI RCCGGY 1 cut(s) 625
BssAI RCCGGY 1 cut(s) 625
BssECI CCNNGG 2 cut(s) 190, 662
BssMI GATC 3 cut(s) 358, 511, 570
BssNI GRCGYC 2 cut(s) 90, 659
Bst2UI CCWGG 2 cut(s) 653, 663
Bst4CI ACNGT 1 cut(s) 408
BstACI GRCGYC 2 cut(s) 90, 659
BstC8I GCNNGC 1 cut(s) 300
BstDEI CTNAG 2 cut(s) 390, 524
BstDSI CCRYGG 1 cut(s) 190
BstF5I GGATG 6 cut(s) 26, 155, 377, 435, 468, 493
BstH2I RGCGCY 1 cut(s) 662
BstHHI GCGC 2 cut(s) 661, 686
BstKTI GATC 3 cut(s) 361, 514, 573
BstMAI GTCTC 3 cut(s) 225, 386, 695
BstMBI GATC 3 cut(s) 358, 511, 570
BstNI CCWGG 2 cut(s) 653, 663
BstSCI CCNGG 3 cut(s) 158, 651, 661
BstSFI CTRYAG 2 cut(s) 166, 631
BsuI GTATCC 1 cut(s) 67
BsuRI GGCC 2 cut(s) 154, 639
BtgI CCRYGG 1 cut(s) 190
BtsCI GGATG 6 cut(s) 26, 155, 377, 435, 468, 493
BtsI GCAGTG 1 cut(s) 640
BtsIMutI CAGTG 2 cut(s) 30, 640
Cac8I GCNNGC 1 cut(s) 300
CfoI GCGC 2 cut(s) 661, 686
Cfr10I RCCGGY 1 cut(s) 625
CviAII CATG 3 cut(s) 332, 459, 540
CviJI RGCY 9 cut(s) 119, 133, 154, 165, 469, 538, 625, 639, 649
CviKI_1 RGCY 9 cut(s) 119, 133, 154, 165, 469, 538, 625, 639, 649
DdeI CTNAG 2 cut(s) 390, 524
DinI GGCGCC 1 cut(s) 660
DpnI GATC 3 cut(s) 360, 513, 572
DpnII GATC 3 cut(s) 358, 511, 570
DraI TTTAAA 1 cut(s) 475
EaeI YGGCCR 2 cut(s) 152, 637
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 2 cut(s) 651, 661
EgeI GGCGCC 1 cut(s) 660
EheI GGCGCC 1 cut(s) 660
FaeI CATG 3 cut(s) 335, 462, 543
FatI CATG 3 cut(s) 331, 458, 539
FbaI TGATCA 2 cut(s) 358, 570
FokI GGATG 6 cut(s) 13, 142, 384, 442, 475, 500
FspBI CTAG 1 cut(s) 707
GlaI GCGC 2 cut(s) 660, 685
GsuI CTGGAG 1 cut(s) 635
HaeII RGCGCY 1 cut(s) 662
HaeIII GGCC 2 cut(s) 154, 639
HapII CCGG 2 cut(s) 159, 626
HhaI GCGC 2 cut(s) 661, 686
Hin1I GRCGYC 2 cut(s) 90, 659
Hin1II CATG 3 cut(s) 335, 462, 543
Hin6I GCGC 2 cut(s) 659, 684
HinP1I GCGC 2 cut(s) 659, 684
HincII GTYRAC 5 cut(s) 88, 226, 337, 493, 580
HindII GTYRAC 5 cut(s) 88, 226, 337, 493, 580
HinfI GANTC 1 cut(s) 703
HpaI GTTAAC 2 cut(s) 226, 337
HpaII CCGG 2 cut(s) 159, 626
Hpy166II GTNNAC 6 cut(s) 88, 226, 337, 422, 493, 580
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 4 cut(s) 136, 366, 509, 515
Hpy8I GTNNAC 6 cut(s) 88, 226, 337, 422, 493, 580
HpyAV CCTTC 1 cut(s) 271
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 6 cut(s) 83, 263, 349, 521, 563, 633
HpyF3I CTNAG 2 cut(s) 390, 524
HpySE526I ACGT 1 cut(s) 90
Hsp92I GRCGYC 2 cut(s) 90, 659
Hsp92II CATG 3 cut(s) 335, 462, 543
HspAI GCGC 2 cut(s) 659, 684
KasI GGCGCC 1 cut(s) 658
Ksp22I TGATCA 2 cut(s) 358, 570
KspAI GTTAAC 2 cut(s) 226, 337
Kzo9I GATC 3 cut(s) 358, 511, 570
LmnI GCTCC 5 cut(s) 162, 184, 307, 535, 654
LweI GCATC 2 cut(s) 362, 508
MaeI CTAG 1 cut(s) 707
MaeII ACGT 1 cut(s) 90
MalI GATC 3 cut(s) 360, 513, 572
MboI GATC 3 cut(s) 358, 511, 570
MboII GAAGA 2 cut(s) 91, 631
MfeI CAATTG 1 cut(s) 564
MlsI TGGCCA 1 cut(s) 154
MluCI AATT 5 cut(s) 121, 238, 454, 476, 564
MluNI TGGCCA 1 cut(s) 154
Mly113I GGCGCC 1 cut(s) 659
MlyI GAGTC 1 cut(s) 697
MnlI CCTC 8 cut(s) 34, 274, 315, 339, 362, 386, 477, 649
Mox20I TGGCCA 1 cut(s) 154
MroXI GAANNNNTTC 1 cut(s) 199
MscI TGGCCA 1 cut(s) 154
MseI TTAA 6 cut(s) 66, 225, 312, 336, 474, 721
Msp20I TGGCCA 1 cut(s) 154
MspI CCGG 2 cut(s) 159, 626
MspR9I CCNGG 3 cut(s) 160, 653, 663
MunI CAATTG 1 cut(s) 564
Mva1269I GAATGC 1 cut(s) 611
MvaI CCWGG 2 cut(s) 653, 663
NarI GGCGCC 1 cut(s) 659
NciI CCSGG 1 cut(s) 160
NdeII GATC 3 cut(s) 358, 511, 570
NlaIII CATG 3 cut(s) 335, 462, 543
NlaIV GGNNCC 3 cut(s) 537, 650, 660
PctI GAATGC 1 cut(s) 611
PdmI GAANNNNTTC 1 cut(s) 199
PfoI TCCNGGA 2 cut(s) 158, 651
PleI GAGTC 1 cut(s) 697
PluTI GGCGCC 1 cut(s) 662
PpsI GAGTC 1 cut(s) 697
PsiI TTATAA 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 651, 661
PspGI CCWGG 2 cut(s) 651, 661
PspN4I GGNNCC 3 cut(s) 537, 650, 660
PstI CTGCAG 1 cut(s) 635
SaqAI TTAA 6 cut(s) 66, 225, 312, 336, 474, 721
Sau3AI GATC 3 cut(s) 358, 511, 570
SchI GAGTC 1 cut(s) 697
ScrFI CCNGG 3 cut(s) 160, 653, 663
SetI ASST 5 cut(s) 93, 121, 135, 167, 579
SfaNI GCATC 2 cut(s) 362, 508
SfcI CTRYAG 2 cut(s) 166, 631
SfoI GGCGCC 1 cut(s) 660
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 5 cut(s) 121, 238, 454, 476, 564
SspDI GGCGCC 1 cut(s) 658
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 3 cut(s) 158, 651, 661
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 1 cut(s) 93
TasI AATT 5 cut(s) 121, 238, 454, 476, 564
Tru1I TTAA 6 cut(s) 66, 225, 312, 336, 474, 721
Tru9I TTAA 6 cut(s) 66, 225, 312, 336, 474, 721
TscAI CASTG 2 cut(s) 37, 640
TspDTI ATGAA 5 cut(s) 91, 222, 447, 479, 681
TspGWI ACGGA 2 cut(s) 207, 514
TspRI CASTG 2 cut(s) 37, 640
XapI RAATTY 1 cut(s) 476
XcmI CCANNNNNNNNNTGG 1 cut(s) 659
XmnI GAANNNNTTC 1 cut(s) 199
XspI CTAG 1 cut(s) 707
ZraI GACGTC 1 cut(s) 91
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.