Rmu_sc0003601.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003601.1
OG0000139
Physical Location & Seq
Reverse (-)
6026 .. 6568
543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003601.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atgtctagaatatttgaaccagataggtatggttttggttatgtctcatccactgatgactacaaacttgttttagtagtccacattggttctcatcattacgctgtttctgcaccggatgttaagatcttcatattctcagtgagagctaactgttggaaaattagtgaagtttttcgctggccattcctcaagtacagatcgactagtgactgtggaactctttcaaatgaagcgatccattgggttaaccaatactatgtctatctacaagactacattgaagcaattgatgtctgtgcttttgatttggaaaatgaggagttacgtaaagtgcctgttccttgttttaagcaagatgatgatcgaatttgcaatagaagaatgcggactgttgttcattcaggaggatgcctttgcgtttcgtctcagactattcatgataggagtggggatattgaattgtggatgatgagagattacggggtgtccaatttgtttgagcccaaaagtaattttggcaagattcttgagtggatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

180

Amino Acids

21.06

Weight (kDa)

5.85

Isoelectric Point (pI)

50.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 388
AclWI GGATC 1 cut(s) 232
AcoI YGGCCR 1 cut(s) 182
AcsI RAATTY 1 cut(s) 369
AfaI GTAC 1 cut(s) 197
AgsI TTSAA 4 cut(s) 17, 228, 284, 461
AhlI ACTAGT 1 cut(s) 206
AluBI AGCT 1 cut(s) 149
AluI AGCT 1 cut(s) 149
Alw26I GTCTC 2 cut(s) 49, 432
AlwI GGATC 1 cut(s) 232
AoxI GGCC 1 cut(s) 182
ApoI RAATTY 1 cut(s) 369
Asp700I GAANNNNTTC 2 cut(s) 174, 223
BalI TGGCCA 1 cut(s) 184
BanII GRGCYC 1 cut(s) 507
BcoDI GTCTC 2 cut(s) 49, 432
BcuI ACTAGT 1 cut(s) 206
BfaI CTAG 2 cut(s) 6, 207
BglII AGATCT 1 cut(s) 126
BmsI GCATC 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 363
BsaWI WCCGGW 1 cut(s) 115
Bse8I GATNNNNATC 1 cut(s) 363
BseGI GGATG 4 cut(s) 47, 124, 416, 474
BseJI GATNNNNATC 1 cut(s) 363
BseMII CTCAG 2 cut(s) 153, 443
BseRI GAGGAG 1 cut(s) 335
BsgI GTGCAG 1 cut(s) 96
BshFI GGCC 1 cut(s) 184
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 2 cut(s) 49, 432
BsmBI CGTCTC 1 cut(s) 432
BsmI GAATGC 1 cut(s) 390
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 507
Bsp143I GATC 4 cut(s) 126, 200, 237, 364
BspACI CCGC 1 cut(s) 388
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 2 cut(s) 152, 442
BspHI TCATGA 1 cut(s) 439
BspPI GGATC 1 cut(s) 232
BssMI GATC 4 cut(s) 126, 200, 237, 364
Bst4CI ACNGT 3 cut(s) 155, 215, 394
BstBAI YACGTR 1 cut(s) 329
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 2 cut(s) 139, 429
BstF5I GGATG 4 cut(s) 47, 124, 416, 474
BstKTI GATC 4 cut(s) 129, 203, 240, 367
BstMAI GTCTC 2 cut(s) 49, 432
BstMBI GATC 4 cut(s) 126, 200, 237, 364
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSNI TACGTA 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuRI GGCC 1 cut(s) 184
BtsCI GGATG 4 cut(s) 47, 124, 416, 474
BtsIMutI CAGTG 2 cut(s) 51, 147
Cac8I GCNNGC 1 cut(s) 182
CciI TCATGA 1 cut(s) 439
Csp6I GTAC 1 cut(s) 196
CviAII CATG 1 cut(s) 440
CviJI RGCY 3 cut(s) 149, 184, 505
CviKI_1 RGCY 3 cut(s) 149, 184, 505
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 2 cut(s) 139, 429
DpnI GATC 4 cut(s) 128, 202, 239, 366
DpnII GATC 4 cut(s) 126, 200, 237, 364
EaeI YGGCCR 1 cut(s) 182
Eco105I TACGTA 1 cut(s) 329
Eco24I GRGCYC 1 cut(s) 507
EcoT38I GRGCYC 1 cut(s) 507
Esp3I CGTCTC 1 cut(s) 432
FaeI CATG 1 cut(s) 443
FaiI YATR 5 cut(s) 30, 42, 134, 261, 441
FatI CATG 1 cut(s) 439
FokI GGATG 4 cut(s) 34, 131, 423, 481
FriOI GRGCYC 1 cut(s) 507
FspBI CTAG 2 cut(s) 6, 207
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 116
Hin1II CATG 1 cut(s) 443
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 1 cut(s) 526
HpaI GTTAAC 1 cut(s) 250
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 2 cut(s) 82, 250
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 4 cut(s) 6, 405, 440, 530
Hpy8I GTNNAC 2 cut(s) 82, 250
HpyCH4III ACNGT 3 cut(s) 155, 215, 394
HpyCH4IV ACGT 1 cut(s) 328
HpyCH4V TGCA 2 cut(s) 113, 375
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 2 cut(s) 139, 429
HpySE526I ACGT 1 cut(s) 328
Hsp92II CATG 1 cut(s) 443
KspAI GTTAAC 1 cut(s) 250
Kzo9I GATC 4 cut(s) 126, 200, 237, 364
LpnPI CCDG 5 cut(s) 33, 129, 166, 351, 390
LweI GCATC 1 cut(s) 401
MaeI CTAG 2 cut(s) 6, 207
MaeII ACGT 1 cut(s) 328
MaeIII GTNAC 2 cut(s) 209, 324
MalI GATC 4 cut(s) 128, 202, 239, 366
MboI GATC 4 cut(s) 126, 200, 237, 364
MboII GAAGA 2 cut(s) 121, 393
MfeI CAATTG 1 cut(s) 288
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 507
MlsI TGGCCA 1 cut(s) 184
MluCI AATT 6 cut(s) 162, 288, 369, 461, 493, 514
MluNI TGGCCA 1 cut(s) 184
MmeI TCCRAC 1 cut(s) 137
MnlI CCTC 3 cut(s) 200, 313, 401
Mox20I TGGCCA 1 cut(s) 184
MroXI GAANNNNTTC 2 cut(s) 174, 223
MscI TGGCCA 1 cut(s) 184
MseI TTAA 3 cut(s) 123, 249, 351
Msp20I TGGCCA 1 cut(s) 184
MspI CCGG 1 cut(s) 116
MunI CAATTG 1 cut(s) 288
Mva1269I GAATGC 1 cut(s) 390
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 4 cut(s) 126, 200, 237, 364
NlaIII CATG 1 cut(s) 443
NmuCI GTSAC 1 cut(s) 209
PagI TCATGA 1 cut(s) 439
PctI GAATGC 1 cut(s) 390
PdmI GAANNNNTTC 2 cut(s) 174, 223
PfeI GAWTC 1 cut(s) 526
Ppu21I YACGTR 1 cut(s) 329
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
SaqAI TTAA 3 cut(s) 123, 249, 351
Sau3AI GATC 4 cut(s) 126, 200, 237, 364
SduI GDGCHC 1 cut(s) 507
SetI ASST 3 cut(s) 29, 151, 331
SfaNI GCATC 1 cut(s) 401
SmlI CTYRAG 2 cut(s) 191, 530
SmoI CTYRAG 2 cut(s) 191, 530
SnaBI TACGTA 1 cut(s) 329
SpeI ACTAGT 1 cut(s) 206
Sse9I AATT 6 cut(s) 162, 288, 369, 461, 493, 514
SsiI CCGC 1 cut(s) 388
SspI AATATT 1 cut(s) 12
SspMI CTAG 2 cut(s) 6, 207
TaaI ACNGT 3 cut(s) 155, 215, 394
TaiI ACGT 1 cut(s) 331
TaqI TCGA 2 cut(s) 203, 367
TasI AATT 6 cut(s) 162, 288, 369, 461, 493, 514
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 1 cut(s) 526
Tru1I TTAA 3 cut(s) 123, 249, 351
Tru9I TTAA 3 cut(s) 123, 249, 351
TscAI CASTG 2 cut(s) 58, 147
TseFI GTSAC 1 cut(s) 209
Tsp45I GTSAC 1 cut(s) 209
TspDTI ATGAA 4 cut(s) 121, 246, 389, 428
TspRI CASTG 2 cut(s) 58, 147
XapI RAATTY 1 cut(s) 369
XbaI TCTAGA 1 cut(s) 5
XmnI GAANNNNTTC 2 cut(s) 174, 223
XspI CTAG 2 cut(s) 6, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.