Rroxscaffold_1G00005930

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Reverse (-)
7961469 .. 7962092
624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005930.1

Sequence Viewer

Length: 624 bp
ATGGCCACTGATTACTACAAACTTGTTTTCTTTGAACCCCTAGATTTTGCAGTTCACATATTTTCAACTAAGGATAGCTCATGTAAAGTTTTCAAAGCTCCTCACTTGTCGTTCCCCCACTATTATGGCAGGGCTCTTTTAGGTTCTAGTGGAGCAATTCATTGGGTCCGCAGAACTGGGATCGGGGAGCCAGCTATCTCTGATTTTGATTTGGCAGATGAGAAGTTCCGGCAATTGCCATTGCCTCATGTTATGATCCAAAATGAAACTATGAATGCAAGACCGATAGGAACTCAGGTTCTCAAAGGAGGACACCTTTGTGTATGGTCAAATGGTGAATTTTGGGTGATGAAAGAGTATGCGGTCCCTGAATCTTGGGTTAAAATGTTACAATTTATTGTGTTTGATTTACCAGATGTGTTTGCTTCAACGTCTGGTTGGATTCCTGTTTTTGTTACAGAAGGCGGTACAGTTGTGATCCTCCTTGACAAGGAGTTGGTCAGAATTGAATGTCATAGAAAACAGAAGCCTGTCTGTAGCGGTCGGTATAAGATTGAGGGTGCAATGCAGGGTTTGTTTCAATATGCTGCAATGGTATATGATGAAACTCTACTTTCGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

207

Amino Acids

23.49

Weight (kDa)

6.37

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 169, 362, 465, 540
AclWI GGATC 3 cut(s) 188, 250, 472
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 338
AfaI GTAC 1 cut(s) 469
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 6 cut(s) 35, 66, 94, 429, 509, 581
AleI CACNNNNGTG 1 cut(s) 318
AloI GAACNNNNNNTCC 2 cut(s) 282, 314
AluBI AGCT 3 cut(s) 78, 98, 194
AluI AGCT 3 cut(s) 78, 98, 194
AlwI GGATC 3 cut(s) 188, 250, 472
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 587
ApoI RAATTY 1 cut(s) 338
AspS9I GGNCC 2 cut(s) 166, 364
AsuHPI GGTGA 2 cut(s) 347, 358
AvaII GGWCC 2 cut(s) 166, 364
BaeI ACNNNNGTAYC 2 cut(s) 459, 492
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 574
BfaI CTAG 2 cut(s) 41, 147
BfmI CTRYAG 1 cut(s) 535
BisI GCNGC 1 cut(s) 588
BlsI GCNGC 1 cut(s) 589
Bme18I GGWCC 2 cut(s) 166, 364
BmgT120I GGNCC 2 cut(s) 166, 364
BmiI GGNNCC 3 cut(s) 167, 189, 366
BmrI ACTGGG 1 cut(s) 186
BmuI ACTGGG 1 cut(s) 186
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse1I ACTGG 1 cut(s) 181
Bse3DI GCAATG 3 cut(s) 239, 570, 597
BseLI CCNNNNNNNGG 1 cut(s) 490
BseMI GCAATG 3 cut(s) 239, 570, 597
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 181
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 574
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 1 cut(s) 5
BsiEI CGRYCG 1 cut(s) 544
BsiSI CCGG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 136
Bsp143I GATC 3 cut(s) 180, 255, 477
BspACI CCGC 4 cut(s) 169, 362, 465, 540
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 167, 189, 366
BspPI GGATC 3 cut(s) 188, 250, 472
BsrDI GCAATG 3 cut(s) 239, 570, 597
BsrI ACTGG 1 cut(s) 181
BssMI GATC 3 cut(s) 180, 255, 477
Bst4CI ACNGT 1 cut(s) 472
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 69, 294
BstENI CCTNNNNNAGG 1 cut(s) 488
BstKTI GATC 3 cut(s) 183, 258, 480
BstMBI GATC 3 cut(s) 180, 255, 477
BstMCI CGRYCG 1 cut(s) 544
BstSFI CTRYAG 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 574
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 6
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 2 cut(s) 166, 364
Csp6I GTAC 1 cut(s) 468
CviAII CATG 2 cut(s) 81, 248
CviJI RGCY 7 cut(s) 5, 78, 98, 134, 190, 194, 529
CviKI_1 RGCY 7 cut(s) 5, 78, 98, 134, 190, 194, 529
CviQI GTAC 1 cut(s) 468
DdeI CTNAG 2 cut(s) 69, 294
DpnI GATC 3 cut(s) 182, 257, 479
DpnII GATC 3 cut(s) 180, 255, 477
EaeI YGGCCR 1 cut(s) 3
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 2 cut(s) 166, 364
EcoNI CCTNNNNNAGG 1 cut(s) 488
EcoT38I GRGCYC 1 cut(s) 136
FaeI CATG 2 cut(s) 84, 251
FaqI GGGAC 1 cut(s) 350
FatI CATG 2 cut(s) 80, 247
Fnu4HI GCNGC 1 cut(s) 588
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 588
FspBI CTAG 2 cut(s) 41, 147
GluI GCNGC 1 cut(s) 588
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 229
Hin1II CATG 2 cut(s) 84, 251
HinfI GANTC 2 cut(s) 371, 442
HpaII CCGG 1 cut(s) 229
HphI GGTGA 2 cut(s) 347, 358
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 2 cut(s) 202, 503
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 1 cut(s) 455
HpyCH4III ACNGT 1 cut(s) 472
HpyCH4IV ACGT 1 cut(s) 431
HpyCH4V TGCA 5 cut(s) 50, 278, 563, 568, 590
HpyF3I CTNAG 2 cut(s) 69, 294
HpySE526I ACGT 1 cut(s) 431
Hsp92II CATG 2 cut(s) 84, 251
Kzo9I GATC 3 cut(s) 180, 255, 477
LmnI GCTCC 3 cut(s) 103, 152, 187
Lsp1109I GCAGC 1 cut(s) 574
MaeI CTAG 2 cut(s) 41, 147
MaeII ACGT 1 cut(s) 431
MaeIII GTNAC 2 cut(s) 387, 454
MalI GATC 3 cut(s) 182, 257, 479
MboI GATC 3 cut(s) 180, 255, 477
MfeI CAATTG 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 136
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 156, 233, 338, 392, 504
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 419
MnlI CCTC 5 cut(s) 111, 255, 302, 491, 550
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 381
MslI CAYNNNNRTG 2 cut(s) 123, 318
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 1 cut(s) 229
MunI CAATTG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 280
NdeII GATC 3 cut(s) 180, 255, 477
NlaIII CATG 2 cut(s) 84, 251
NlaIV GGNNCC 3 cut(s) 167, 189, 366
OliI CACNNNNGTG 1 cut(s) 318
PctI GAATGC 1 cut(s) 280
PfeI GAWTC 2 cut(s) 371, 442
PkrI GCNGC 1 cut(s) 589
PspN4I GGNNCC 3 cut(s) 167, 189, 366
PspPI GGNCC 2 cut(s) 166, 364
RsaI GTAC 1 cut(s) 469
RsaNI GTAC 1 cut(s) 468
RseI CAYNNNNRTG 2 cut(s) 123, 318
SaqAI TTAA 1 cut(s) 381
SatI GCNGC 1 cut(s) 588
Sau3AI GATC 3 cut(s) 180, 255, 477
Sau96I GGNCC 2 cut(s) 166, 364
SduI GDGCHC 1 cut(s) 136
SetI ASST 7 cut(s) 80, 100, 145, 196, 300, 318, 434
SfcI CTRYAG 1 cut(s) 535
SinI GGWCC 2 cut(s) 166, 364
SmiMI CAYNNNNRTG 2 cut(s) 123, 318
Sse9I AATT 5 cut(s) 156, 233, 338, 392, 504
SsiI CCGC 4 cut(s) 169, 362, 465, 540
SspMI CTAG 2 cut(s) 41, 147
TaaI ACNGT 1 cut(s) 472
TaiI ACGT 1 cut(s) 434
TaqII GACCGA 1 cut(s) 298
TasI AATT 5 cut(s) 156, 233, 338, 392, 504
TfiI GAWTC 2 cut(s) 371, 442
Tru1I TTAA 1 cut(s) 381
Tru9I TTAA 1 cut(s) 381
TscAI CASTG 1 cut(s) 13
TseI GCWGC 1 cut(s) 587
TspDTI ATGAA 5 cut(s) 149, 279, 287, 365, 618
TspRI CASTG 1 cut(s) 13
VpaK11BI GGWCC 2 cut(s) 166, 364
XagI CCTNNNNNAGG 1 cut(s) 488
XapI RAATTY 1 cut(s) 338
XspI CTAG 2 cut(s) 41, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.