FvH4_3g42420

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Reverse (-)
35408365 .. 35408916
552 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42420.t1

Sequence Viewer

Length: 552 bp
ATGTCGAGCTGCTTTGATCTCCCTGAAGATATTATAGTCAAGATTTTGTGCCGGCTGCCGGTTAAGTCCTTGATCCGGTTCACTTGTGTTTCAAAACGGTGGCGGTCGATCATTTCTGATCCTAAATTTGGAAAATCTCACTTCCAACTAGCTTCAAAGCTGAGAACCCTCTGTAGAAAAGTCCTCCTCATCTCCTACCCTAGTGTCAGAGAGCCAGGTCCGAGGCCCAGTGCTTGTTATGATCCAACCACGAAGTTACCCCCTCGATTTCAATCCTTGGATGATAAGTTTTCAGTAAAAAAATTTACATTCCCATCTGAGGAGCATGCGGAGATGAAAAAAATGGGTTCCTGCAATGGTTTGCTACTTCTAGGCCAACACTGTTATAGAAACTTGTCTCTCTGGAACCTATCAACTGGATTCTGCCGCAAGATATCTAATCCATGTTTGCGGTTGCGGTCAATACATTCAGCAGATGGGAATAGCCTGTACTTTATAAACAGTGGCTTTGGTTATGTGTCGGCCAGTGATGACTACAAACTTGTGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

9.58

Isoelectric Point (pI)

50.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 6 - 45 2e-13 F-box domain
F-box-like PF12937 6 - 42 2.2e-10 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 497
AciI CCGC 5 cut(s) 103, 329, 427, 451, 457
AclWI GGATC 3 cut(s) 67, 113, 236
AcoI YGGCCR 1 cut(s) 522
AcsI RAATTY 2 cut(s) 125, 302
AcuI CTGAAG 1 cut(s) 45
AfaI GTAC 1 cut(s) 491
AfiI CCNNNNNNNGG 4 cut(s) 58, 75, 128, 319
AgsI TTSAA 3 cut(s) 93, 156, 272
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 9, 152, 160
AluI AGCT 3 cut(s) 9, 152, 160
Alw26I GTCTC 1 cut(s) 402
AlwI GGATC 3 cut(s) 67, 113, 236
AoxI GGCC 3 cut(s) 224, 373, 522
ApeKI GCWGC 2 cut(s) 9, 55
ApoI RAATTY 2 cut(s) 125, 302
AspS9I GGNCC 2 cut(s) 218, 225
AvaII GGWCC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 42
BccI CCATC 2 cut(s) 322, 470
BciT130I CCWGG 1 cut(s) 216
BcoDI GTCTC 1 cut(s) 402
BfaI CTAG 3 cut(s) 149, 201, 371
BfmI CTRYAG 1 cut(s) 172
BisI GCNGC 3 cut(s) 10, 56, 427
BlsI GCNGC 3 cut(s) 11, 57, 428
Bme1390I CCNGG 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 218, 225
BmiI GGNNCC 2 cut(s) 349, 407
BmrFI CCNGG 1 cut(s) 216
BmrI ACTGGG 1 cut(s) 222
BmuI ACTGGG 1 cut(s) 222
BsaBI GATNNNNATC 1 cut(s) 271
BsaJI CCNNGG 2 cut(s) 221, 276
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 4 cut(s) 58, 75, 128, 319
Bse118I RCCGGY 2 cut(s) 51, 58
Bse1I ACTGG 3 cut(s) 228, 421, 525
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 1 cut(s) 271
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 221, 276
BseGI GGATG 1 cut(s) 286
BseJI GATNNNNATC 1 cut(s) 271
BseLI CCNNNNNNNGG 4 cut(s) 58, 75, 128, 319
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 2 cut(s) 152, 309
BseNI ACTGG 3 cut(s) 228, 421, 525
BseRI GAGGAG 2 cut(s) 176, 335
BseXI GCAGC 1 cut(s) 42
Bsh1285I CGRYCG 1 cut(s) 107
BshFI GGCC 3 cut(s) 226, 375, 524
BsiEI CGRYCG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 52, 59, 76
BslI CCNNNNNNNGG 4 cut(s) 58, 75, 128, 319
BsmAI GTCTC 1 cut(s) 402
BsnI GGCC 3 cut(s) 226, 375, 524
Bsp143I GATC 5 cut(s) 16, 72, 108, 118, 241
BspACI CCGC 5 cut(s) 103, 329, 427, 451, 457
BspANI GGCC 3 cut(s) 226, 375, 524
BspCNI CTCAG 2 cut(s) 153, 310
BspLI GGNNCC 2 cut(s) 349, 407
BspPI GGATC 3 cut(s) 67, 113, 236
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 51, 58
BsrI ACTGG 3 cut(s) 228, 421, 525
BssAI RCCGGY 2 cut(s) 51, 58
BssECI CCNNGG 2 cut(s) 221, 276
BssMI GATC 5 cut(s) 16, 72, 108, 118, 241
BssT1I CCWWGG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 3 cut(s) 99, 383, 503
BstC8I GCNNGC 2 cut(s) 53, 327
BstDEI CTNAG 2 cut(s) 161, 318
BstF5I GGATG 1 cut(s) 286
BstKTI GATC 5 cut(s) 19, 75, 111, 121, 244
BstMAI GTCTC 1 cut(s) 402
BstMBI GATC 5 cut(s) 16, 72, 108, 118, 241
BstMCI CGRYCG 1 cut(s) 107
BstNI CCWGG 1 cut(s) 216
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 1 cut(s) 214
BstSFI CTRYAG 1 cut(s) 172
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 3 cut(s) 226, 375, 524
BtsCI GGATG 1 cut(s) 286
BtsIMutI CAGTG 4 cut(s) 235, 379, 508, 532
Cac8I GCNNGC 2 cut(s) 53, 327
Cfr10I RCCGGY 2 cut(s) 51, 58
Cfr13I GGNCC 2 cut(s) 218, 225
Csp6I GTAC 1 cut(s) 490
CviAII CATG 2 cut(s) 326, 444
CviQI GTAC 1 cut(s) 490
DdeI CTNAG 2 cut(s) 161, 318
DpnI GATC 5 cut(s) 18, 74, 110, 120, 243
DpnII GATC 5 cut(s) 16, 72, 108, 118, 241
EaeI YGGCCR 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 276
Eco32I GATATC 1 cut(s) 435
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 214
EcoRV GATATC 1 cut(s) 435
EcoT14I CCWWGG 1 cut(s) 276
ErhI CCWWGG 1 cut(s) 276
FaeI CATG 2 cut(s) 329, 447
FaiI YATR 8 cut(s) 35, 240, 327, 387, 445, 497, 516, 550
FatI CATG 2 cut(s) 325, 443
Fnu4HI GCNGC 3 cut(s) 10, 56, 427
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 10, 56, 427
FspBI CTAG 3 cut(s) 149, 201, 371
GluI GCNGC 3 cut(s) 10, 56, 427
HaeIII GGCC 3 cut(s) 226, 375, 524
HapII CCGG 3 cut(s) 52, 59, 76
Hin1II CATG 2 cut(s) 329, 447
HinfI GANTC 1 cut(s) 420
HpaII CCGG 3 cut(s) 52, 59, 76
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 4 cut(s) 118, 209, 222, 319
Hpy188III TCNNGA 2 cut(s) 40, 403
Hpy8I GTNNAC 1 cut(s) 81
HpyCH4III ACNGT 3 cut(s) 99, 383, 503
HpyCH4V TGCA 1 cut(s) 354
HpyF3I CTNAG 2 cut(s) 161, 318
Hsp92II CATG 2 cut(s) 329, 447
KroI GCCGGC 1 cut(s) 51
KroNI GCCGGC 1 cut(s) 53
Kzo9I GATC 5 cut(s) 16, 72, 108, 118, 241
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 3 cut(s) 149, 201, 371
MaeIII GTNAC 1 cut(s) 255
MalI GATC 5 cut(s) 18, 74, 110, 120, 243
MboI GATC 5 cut(s) 16, 72, 108, 118, 241
MboII GAAGA 1 cut(s) 38
MluCI AATT 2 cut(s) 125, 302
MmeI TCCRAC 2 cut(s) 169, 269
MnlI CCTC 6 cut(s) 179, 194, 197, 216, 273, 313
MroNI GCCGGC 1 cut(s) 51
MseI TTAA 1 cut(s) 63
MspI CCGG 3 cut(s) 52, 59, 76
MspR9I CCNGG 1 cut(s) 216
MvaI CCWGG 1 cut(s) 216
NaeI GCCGGC 1 cut(s) 53
NdeII GATC 5 cut(s) 16, 72, 108, 118, 241
NgoMIV GCCGGC 1 cut(s) 51
NlaIII CATG 2 cut(s) 329, 447
NlaIV GGNNCC 2 cut(s) 349, 407
NspI RCATGY 1 cut(s) 329
PaeI GCATGC 1 cut(s) 329
PdiI GCCGGC 1 cut(s) 53
PfeI GAWTC 1 cut(s) 420
PkrI GCNGC 3 cut(s) 11, 57, 428
PsiI TTATAA 1 cut(s) 497
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PspN4I GGNNCC 2 cut(s) 349, 407
PspPI GGNCC 2 cut(s) 218, 225
RsaI GTAC 1 cut(s) 491
RsaNI GTAC 1 cut(s) 490
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 3 cut(s) 10, 56, 427
Sau3AI GATC 5 cut(s) 16, 72, 108, 118, 241
Sau96I GGNCC 2 cut(s) 218, 225
ScrFI CCNGG 1 cut(s) 216
SetI ASST 5 cut(s) 11, 154, 162, 220, 411
SfcI CTRYAG 1 cut(s) 172
SinI GGWCC 1 cut(s) 218
SphI GCATGC 1 cut(s) 329
Sse9I AATT 2 cut(s) 125, 302
SsiI CCGC 5 cut(s) 103, 329, 427, 451, 457
SspMI CTAG 3 cut(s) 149, 201, 371
StyD4I CCNGG 1 cut(s) 214
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 3 cut(s) 99, 383, 503
TaqI TCGA 3 cut(s) 5, 107, 265
TasI AATT 2 cut(s) 125, 302
TatI WGTACW 1 cut(s) 489
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 1 cut(s) 420
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 4 cut(s) 235, 386, 508, 532
TseI GCWGC 2 cut(s) 9, 55
TspDTI ATGAA 1 cut(s) 350
TspRI CASTG 4 cut(s) 235, 386, 508, 532
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 125, 302
XceI RCATGY 1 cut(s) 329
XspI CTAG 3 cut(s) 149, 201, 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.