RchiOBHm_Chr5g0075921

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000139
Physical Location & Seq
Reverse (-)
81637617 .. 81638614
998 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35062

Sequence Viewer

Length: 819 bp
ATGGAAGAAATGGGCTCCTGCAATGGTTTGGTACTTGTAGGCCAACCGTATCGCGATCATTACGAGAACTTGTCTATCTGGAACCAATCTACTGGATTGTTCCGCAAGATTCCTAATCCAAGTTTCAGGGTGAAGTCAATGGGAATGTGTAGAGACTATATAAATTATGGTTTTGGTCATGTGTCCGCCAGCGACGACTACAAACTTGTCTTCATAATACCTGCCCCCGGTGATATGCTGGAAGTCCTTATCTTCTCTCTGAGTGCCAACATTTGGAAAGTTATTAGAGCTCCTTACTCGTCATGGCCAGGCCGGATTAGTGGGCAGGGGACTTTTTCAAATGGAGCAATTCACTGGGTCATTCCCCGCGGAAATGAGACTTTGAACCCAGTTATATATGCTTTTATTTTGGCAGAGGAGGACTTCCGGCTAGTGCCATTGCCACCTGTTCTGTGGCAAATTGAAGAAGGCAGAAATCAGACAGAGATAACAACTCTGGTTCATTTAGGAGGATACCTTTGCATATGGTCTCTGGACCGGAAGGCTGAATCTTGGGTTAAACTCTTTCAATTTCATACACACGATCTCCGCCATATCTTTTCTGGATACTGCCTATGGGATCTGTGTTTCATTACAGAAAGTGATACGATGGTGTTAATACTGAATAAGGAGTTGTTATGGATTGGATGCCGTAACGAAGAGAAGCCGGTCTGCAGTGGAAGGTATAGGCTTGAGAAGGTACAGCCTAAGGTGCAGAGCCTGGCATTTTATTTTCGCGCGACCGTATGTGATGAAACTCCAGTTTCTATAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

272

Amino Acids

31.22

Weight (kDa)

6.0

Isoelectric Point (pI)

40.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 229
AccB7I CCANNNNNTGG 1 cut(s) 273
AccII CGCG 4 cut(s) 54, 369, 777, 779
AciI CCGC 5 cut(s) 103, 186, 367, 369, 589
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 305
AfaI GTAC 2 cut(s) 33, 741
AfiI CCNNNNNNNGG 2 cut(s) 227, 273
AgsI TTSAA 4 cut(s) 339, 385, 464, 569
AjnI CCWGG 2 cut(s) 307, 759
AluBI AGCT 2 cut(s) 290, 812
AluI AGCT 2 cut(s) 290, 812
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 3 cut(s) 147, 371, 534
AlwI GGATC 1 cut(s) 627
AlwNI CAGNNNCTG 1 cut(s) 760
AoxI GGCC 3 cut(s) 40, 305, 310
AspLEI GCGC 1 cut(s) 779
AspS9I GGNCC 1 cut(s) 535
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 2 cut(s) 142, 242
AvaII GGWCC 1 cut(s) 535
AxyI CCTNAGG 1 cut(s) 747
BaeI ACNNNNGTAYC 2 cut(s) 636, 669
BalI TGGCCA 1 cut(s) 307
BanII GRGCYC 2 cut(s) 17, 292
BbsI GAAGAC 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 1 cut(s) 643
BceAI ACGGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 309, 761
BciVI GTATCC 2 cut(s) 506, 599
BcnI CCSGG 1 cut(s) 228
BcoDI GTCTC 3 cut(s) 147, 371, 534
BfaI CTAG 1 cut(s) 431
BfmI CTRYAG 2 cut(s) 712, 807
BfuAI ACCTGC 1 cut(s) 229
BfuI GTATCC 2 cut(s) 506, 599
Bme1390I CCNGG 3 cut(s) 228, 309, 761
Bme18I GGWCC 1 cut(s) 535
BmgT120I GGNCC 1 cut(s) 535
BmiI GGNNCC 2 cut(s) 16, 83
BmrFI CCNGG 3 cut(s) 228, 309, 761
BmrI ACTGGG 2 cut(s) 364, 383
BmsI GCATC 1 cut(s) 677
BmuI ACTGGG 2 cut(s) 364, 383
BpiI GAAGAC 1 cut(s) 202
BpmI CTGGAG 1 cut(s) 783
BpuEI CTTGAG 1 cut(s) 752
BpuMI CCSGG 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 534
BsaJI CCNNGG 2 cut(s) 226, 367
BsaWI WCCGGW 1 cut(s) 537
BsaXI ACNNNNNCTCC 2 cut(s) 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 227, 273
Bse118I RCCGGY 1 cut(s) 706
Bse1I ACTGG 4 cut(s) 97, 359, 389, 800
Bse21I CCTNAGG 1 cut(s) 747
Bse3DI GCAATG 2 cut(s) 28, 437
BseBI CCWGG 2 cut(s) 309, 761
BseDI CCNNGG 2 cut(s) 226, 367
BseGI GGATG 1 cut(s) 692
BseLI CCNNNNNNNGG 2 cut(s) 227, 273
BseMI GCAATG 2 cut(s) 28, 437
BseMII CTCAG 1 cut(s) 251
BseNI ACTGG 4 cut(s) 97, 359, 389, 800
BseRI GAGGAG 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 773
Bsh1236I CGCG 4 cut(s) 54, 369, 777, 779
Bsh1285I CGRYCG 1 cut(s) 783
BshFI GGCC 3 cut(s) 42, 307, 312
BsiEI CGRYCG 1 cut(s) 783
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 5 cut(s) 228, 313, 427, 538, 707
BslFI GGGAC 1 cut(s) 343
BslI CCNNNNNNNGG 2 cut(s) 227, 273
BsmAI GTCTC 3 cut(s) 147, 371, 534
BsmFI GGGAC 1 cut(s) 343
BsnI GGCC 3 cut(s) 42, 307, 312
Bso31I GGTCTC 1 cut(s) 534
Bsp1286I GDGCHC 2 cut(s) 17, 292
Bsp143I GATC 3 cut(s) 55, 583, 619
Bsp68I TCGCGA 1 cut(s) 54
BspACI CCGC 5 cut(s) 103, 186, 367, 369, 589
BspANI GGCC 3 cut(s) 42, 307, 312
BspCNI CTCAG 1 cut(s) 252
BspFNI CGCG 4 cut(s) 54, 369, 777, 779
BspLI GGNNCC 2 cut(s) 16, 83
BspMAI CTGCAG 1 cut(s) 716
BspMI ACCTGC 1 cut(s) 229
BspPI GGATC 1 cut(s) 627
BspTNI GGTCTC 1 cut(s) 534
BsrDI GCAATG 2 cut(s) 28, 437
BsrFI RCCGGY 1 cut(s) 706
BsrI ACTGG 4 cut(s) 97, 359, 389, 800
BssAI RCCGGY 1 cut(s) 706
BssECI CCNNGG 2 cut(s) 226, 367
BssMI GATC 3 cut(s) 55, 583, 619
Bst2UI CCWGG 2 cut(s) 309, 761
Bst4CI ACNGT 2 cut(s) 48, 784
Bst6I CTCTTC 1 cut(s) 693
BstC8I GCNNGC 1 cut(s) 190
BstDEI CTNAG 2 cut(s) 260, 747
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 1 cut(s) 692
BstFNI CGCG 4 cut(s) 54, 369, 777, 779
BstHHI GCGC 1 cut(s) 779
BstKTI GATC 3 cut(s) 58, 586, 622
BstMAI GTCTC 3 cut(s) 147, 371, 534
BstMBI GATC 3 cut(s) 55, 583, 619
BstMCI CGRYCG 1 cut(s) 783
BstMWI GCNNNNNNNGC 1 cut(s) 751
BstNI CCWGG 2 cut(s) 309, 761
BstSCI CCNGG 3 cut(s) 226, 307, 759
BstSFI CTRYAG 2 cut(s) 712, 807
BstUI CGCG 4 cut(s) 54, 369, 777, 779
BstV2I GAAGAC 1 cut(s) 202
BstX2I RGATCY 1 cut(s) 619
BstXI CCANNNNNNTGG 1 cut(s) 92
BstYI RGATCY 1 cut(s) 619
Bsu36I CCTNAGG 1 cut(s) 747
BsuI GTATCC 2 cut(s) 506, 599
BsuRI GGCC 3 cut(s) 42, 307, 312
BtgI CCRYGG 1 cut(s) 367
BtsCI GGATG 1 cut(s) 692
BtsI GCAGTG 1 cut(s) 721
BtsIMutI CAGTG 2 cut(s) 352, 721
BtuMI TCGCGA 1 cut(s) 54
BveI ACCTGC 1 cut(s) 229
Cac8I GCNNGC 1 cut(s) 190
CaiI CAGNNNCTG 1 cut(s) 760
CfoI GCGC 1 cut(s) 779
Cfr10I RCCGGY 1 cut(s) 706
Cfr13I GGNCC 1 cut(s) 535
Cfr42I CCGCGG 1 cut(s) 370
Csp6I GTAC 2 cut(s) 32, 740
CviAII CATG 2 cut(s) 179, 303
CviQI GTAC 2 cut(s) 32, 740
DdeI CTNAG 2 cut(s) 260, 747
DpnI GATC 3 cut(s) 57, 585, 621
DpnII GATC 3 cut(s) 55, 583, 619
EaeI YGGCCR 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 693
EarI CTCTTC 1 cut(s) 693
EciI GGCGGA 2 cut(s) 175, 578
Ecl136II GAGCTC 1 cut(s) 290
Eco24I GRGCYC 2 cut(s) 17, 292
Eco31I GGTCTC 1 cut(s) 534
Eco47I GGWCC 1 cut(s) 535
Eco53kI GAGCTC 1 cut(s) 290
Eco81I CCTNAGG 1 cut(s) 747
EcoICRI GAGCTC 1 cut(s) 290
EcoRII CCWGG 2 cut(s) 307, 759
EcoT38I GRGCYC 2 cut(s) 17, 292
FaeI CATG 2 cut(s) 182, 306
FaqI GGGAC 1 cut(s) 343
FatI CATG 2 cut(s) 178, 302
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 1 cut(s) 524
FokI GGATG 1 cut(s) 699
FriOI GRGCYC 2 cut(s) 17, 292
FspBI CTAG 1 cut(s) 431
GlaI GCGC 1 cut(s) 778
GsuI CTGGAG 1 cut(s) 783
HaeIII GGCC 3 cut(s) 42, 307, 312
HapII CCGG 5 cut(s) 228, 313, 427, 538, 707
HhaI GCGC 1 cut(s) 779
Hin1II CATG 2 cut(s) 182, 306
Hin6I GCGC 1 cut(s) 777
HinP1I GCGC 1 cut(s) 777
HinfI GANTC 2 cut(s) 109, 548
HpaII CCGG 5 cut(s) 228, 313, 427, 538, 707
HphI GGTGA 2 cut(s) 142, 242
Hpy188I TCNGA 2 cut(s) 261, 480
Hpy188III TCNNGA 4 cut(s) 53, 79, 533, 603
Hpy99I CGWCG 1 cut(s) 197
HpyAV CCTTC 4 cut(s) 461, 535, 714, 730
HpyCH4III ACNGT 2 cut(s) 48, 784
HpyCH4V TGCA 4 cut(s) 21, 522, 714, 754
HpyF10VI GCNNNNNNNGC 1 cut(s) 751
HpyF3I CTNAG 2 cut(s) 260, 747
Hsp92II CATG 2 cut(s) 182, 306
HspAI GCGC 1 cut(s) 777
KspI CCGCGG 1 cut(s) 370
Kzo9I GATC 3 cut(s) 55, 583, 619
LmnI GCTCC 3 cut(s) 20, 295, 344
LweI GCATC 1 cut(s) 677
MaeI CTAG 1 cut(s) 431
MaeIII GTNAC 1 cut(s) 692
MalI GATC 3 cut(s) 57, 585, 621
MboI GATC 3 cut(s) 55, 583, 619
MboII GAAGA 5 cut(s) 17, 202, 244, 476, 710
MflI RGATCY 1 cut(s) 619
MhlI GDGCHC 2 cut(s) 17, 292
MlsI TGGCCA 1 cut(s) 307
MluCI AATT 4 cut(s) 163, 348, 459, 569
MluNI TGGCCA 1 cut(s) 307
MnlI CCTC 3 cut(s) 409, 412, 503
Mox20I TGGCCA 1 cut(s) 307
MscI TGGCCA 1 cut(s) 307
MseI TTAA 2 cut(s) 558, 656
Msp20I TGGCCA 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 369
MspI CCGG 5 cut(s) 228, 313, 427, 538, 707
MspR9I CCNGG 3 cut(s) 228, 309, 761
MvaI CCWGG 2 cut(s) 309, 761
MvnI CGCG 4 cut(s) 54, 369, 777, 779
MwoI GCNNNNNNNGC 1 cut(s) 751
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 524
NdeII GATC 3 cut(s) 55, 583, 619
NlaIII CATG 2 cut(s) 182, 306
NlaIV GGNNCC 2 cut(s) 16, 83
NruI TCGCGA 1 cut(s) 54
PfeI GAWTC 2 cut(s) 109, 548
PflMI CCANNNNNTGG 1 cut(s) 273
Psp124BI GAGCTC 1 cut(s) 292
Psp6I CCWGG 2 cut(s) 307, 759
PspGI CCWGG 2 cut(s) 307, 759
PspN4I GGNNCC 2 cut(s) 16, 83
PspPI GGNCC 1 cut(s) 535
PstI CTGCAG 1 cut(s) 716
PstNI CAGNNNCTG 1 cut(s) 760
PsuI RGATCY 1 cut(s) 619
RruI TCGCGA 1 cut(s) 54
RsaI GTAC 2 cut(s) 33, 741
RsaNI GTAC 2 cut(s) 32, 740
SacI GAGCTC 1 cut(s) 292
SacII CCGCGG 1 cut(s) 370
SaqAI TTAA 2 cut(s) 558, 656
Sau3AI GATC 3 cut(s) 55, 583, 619
Sau96I GGNCC 1 cut(s) 535
ScrFI CCNGG 3 cut(s) 228, 309, 761
SduI GDGCHC 2 cut(s) 17, 292
SetI ASST 8 cut(s) 223, 292, 448, 519, 725, 741, 753, 814
SfaNI GCATC 1 cut(s) 677
SfcI CTRYAG 2 cut(s) 712, 807
Sfr303I CCGCGG 1 cut(s) 370
SgrBI CCGCGG 1 cut(s) 370
SinI GGWCC 1 cut(s) 535
SmlI CTYRAG 1 cut(s) 731
SmoI CTYRAG 1 cut(s) 731
Sse9I AATT 4 cut(s) 163, 348, 459, 569
SsiI CCGC 5 cut(s) 103, 186, 367, 369, 589
SspMI CTAG 1 cut(s) 431
SstI GAGCTC 1 cut(s) 292
StyD4I CCNGG 3 cut(s) 226, 307, 759
TaaI ACNGT 2 cut(s) 48, 784
TasI AATT 4 cut(s) 163, 348, 459, 569
TfiI GAWTC 2 cut(s) 109, 548
Tru1I TTAA 2 cut(s) 558, 656
Tru9I TTAA 2 cut(s) 558, 656
TscAI CASTG 2 cut(s) 359, 721
TspDTI ATGAA 5 cut(s) 202, 491, 563, 619, 807
TspRI CASTG 2 cut(s) 359, 721
Van91I CCANNNNNTGG 1 cut(s) 273
VpaK11BI GGWCC 1 cut(s) 535
XcmI CCANNNNNNNNNTGG 2 cut(s) 450, 599
XspI CTAG 1 cut(s) 431
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.