Rh1BG318300

F-box-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
45207037 .. 45207402
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG318300.1

Sequence Viewer

Length: 366 bp
ATGAAGAAGAAGGAGAATCATGGTGATGGTCACCTCCTCCCTGATGATATTATTGTGGAAATTTTAATACATGTGCCCGTCAAAACTTTGATTATTTGCAGTAGCGTTTCAAGAGGGTGGCGACATTTAATATATGGCCCTCAGTTCTCCAAAACCCACTTCAAATTAGCATCTGAGCAGAAAACCCTTGGTCAGACCCTCCTTGTCTCCACTGGCTTGGTAACTCAATCCTTTGAGGTCTTGGAAACCAACTTGATGTCTAGGGTCAAAAATCTTACCTTCCCATTCAAGCAAAAAGACCAGGAGGCTACAACTTATTGGATCATGCAATGGTTTGGTATGTGCAGGTCAATGGTCGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

121

Amino Acids

13.95

Weight (kDa)

9.23

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 49 1.6e-09 F-box domain
F-box-like PF12937 13 - 50 2.7e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 336
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 111, 163, 289
AjnI CCWGG 1 cut(s) 300
AjuI GAANNNNNNNTTGG 2 cut(s) 143, 175
Alw26I GTCTC 1 cut(s) 211
AlwI GGATC 1 cut(s) 329
AoxI GGCC 1 cut(s) 136
ApoI RAATTY 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 137
AsuHPI GGTGA 2 cut(s) 23, 35
BaeGI GKGCMC 1 cut(s) 78
BccI CCATC 1 cut(s) 20
BciT130I CCWGG 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 211
BfaI CTAG 1 cut(s) 261
BfuAI ACCTGC 1 cut(s) 336
Bme1390I CCNGG 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 302
BmsI GCATC 1 cut(s) 179
BsaJI CCNNGG 1 cut(s) 187
Bse1I ACTGG 1 cut(s) 217
Bse3DI GCAATG 1 cut(s) 335
BseBI CCWGG 1 cut(s) 302
BseDI CCNNGG 1 cut(s) 187
BseMI GCAATG 1 cut(s) 335
BseMII CTCAG 2 cut(s) 155, 165
BseNI ACTGG 1 cut(s) 217
BseRI GAGGAG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 78
BsgI GTGCAG 1 cut(s) 364
BshFI GGCC 1 cut(s) 138
BsmAI GTCTC 1 cut(s) 211
BsnI GGCC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 1 cut(s) 321
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 154, 166
BspMI ACCTGC 1 cut(s) 336
BspPI GGATC 1 cut(s) 329
BsrDI GCAATG 1 cut(s) 335
BsrI ACTGG 1 cut(s) 217
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 321
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 302
BstDEI CTNAG 2 cut(s) 141, 174
BstEII GGTNACC 1 cut(s) 29
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 211
BstMBI GATC 1 cut(s) 321
BstNI CCWGG 1 cut(s) 302
BstNSI RCATGY 1 cut(s) 74
BstPI GGTNACC 1 cut(s) 29
BstSCI CCNGG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 138
BtsIMutI CAGTG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 3 cut(s) 20, 71, 325
CviJI RGCY 3 cut(s) 138, 216, 308
CviKI_1 RGCY 3 cut(s) 138, 216, 308
DdeI CTNAG 2 cut(s) 141, 174
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 187
Eco91I GGTNACC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 29
EcoRII CCWGG 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 3 cut(s) 23, 74, 328
FaiI YATR 6 cut(s) 21, 72, 133, 135, 326, 341
FatI CATG 3 cut(s) 19, 70, 324
FspBI CTAG 1 cut(s) 261
HaeIII GGCC 1 cut(s) 138
Hin1II CATG 3 cut(s) 23, 74, 328
HinfI GANTC 1 cut(s) 16
HphI GGTGA 2 cut(s) 23, 35
Hpy188I TCNGA 2 cut(s) 175, 195
Hpy188III TCNNGA 1 cut(s) 111
HpyAV CCTTC 2 cut(s) 4, 289
HpyCH4V TGCA 3 cut(s) 99, 328, 345
HpyF3I CTNAG 2 cut(s) 141, 174
Hsp92II CATG 3 cut(s) 23, 74, 328
Kzo9I GATC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 54, 198, 287, 314, 331
LweI GCATC 1 cut(s) 179
MaeI CTAG 1 cut(s) 261
MaeIII GTNAC 2 cut(s) 29, 220
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 16, 19
MhlI GDGCHC 1 cut(s) 78
MluCI AATT 2 cut(s) 60, 164
MnlI CCTC 7 cut(s) 44, 47, 107, 150, 209, 229, 298
MseI TTAA 2 cut(s) 65, 128
MslI CAYNNNNRTG 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 302
MvaI CCWGG 1 cut(s) 302
NdeII GATC 1 cut(s) 321
NlaIII CATG 3 cut(s) 23, 74, 328
NmuCI GTSAC 1 cut(s) 29
NspI RCATGY 1 cut(s) 74
PciI ACATGT 1 cut(s) 70
PfeI GAWTC 1 cut(s) 16
PscI ACATGT 1 cut(s) 70
Psp6I CCWGG 1 cut(s) 300
PspEI GGTNACC 1 cut(s) 29
PspGI CCWGG 1 cut(s) 300
PspPI GGNCC 1 cut(s) 137
RseI CAYNNNNRTG 1 cut(s) 24
SaqAI TTAA 2 cut(s) 65, 128
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 302
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 36, 240, 281, 350
SfaNI GCATC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 24
Sse9I AATT 2 cut(s) 60, 164
SspMI CTAG 1 cut(s) 261
StyD4I CCNGG 1 cut(s) 300
StyI CCWWGG 1 cut(s) 187
TasI AATT 2 cut(s) 60, 164
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 2 cut(s) 65, 128
Tru9I TTAA 2 cut(s) 65, 128
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 217
XapI RAATTY 1 cut(s) 60
XceI RCATGY 1 cut(s) 74
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.