Rorug05G0444800

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Reverse (-)
61597798 .. 61601315
3518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0444800.1

Sequence Viewer

Length: 906 bp
ATGGAGAATGCAGAGACTGAAACGGAAACGACGCCGTACAAGCTTCTGCTCTCTTGCCCATCTGGTCTTTCGCCATCACAGGTCTCTGTGGTTTTTGACGAACTATATGACCGAATCCCCCATCCAGATATCAACTTGGAGAATTCTATTTCTGAGATATGGGACCAAAGGGTTCAGAAAAATCCATCGTTGTACAACGGTACAAAGTTCAGGCATGGACATCATATATGGCATGATGGAGGACCTAACCAAGAGTCTCATGTATGCCTCCACCTTGGTCTGACAGATTATAGGACTTTTGTGGGAACAAACTTAAATCCTTTATGGGAAATGTTCCTAGCTCCATCAGAAGATGATGCTATACGATGTCAGCACACCTCAAGTCCGTTGGGTAATGCTGCTATTGTGGAGACATCTGACAAGAAAATTCTTGTGTTGCAAAGAAGTCACAATGTTGGGGAATTTCCTGGACACTTTGTTTTCCCAGGAGGCCATCCAGAGCCCCAAGAAGTCGGTATAGTATCTCATCATCACAAAGACTTAACAGACTCCAAACTTCTCAACAAGAAGGTTTCTCAGGAGATGTTCGACAGCATTGTTCGTGAGGTGGTTGAAGAAATTGGAGTACCTTCAGATTCCCTTTACGAGCAGGTTTTCATAGGTATATCCCGCAGGAAGTTGAATGTGAGACCAGCTGCATTTTTCTTCATGAAATGCAGTCTCAGCTCAAAGGAAATTCAGCAAATGTATTCTACTGCACAAGACAGCTTTGAGTCAACTCAGCTTTATACAGTTTCAATGACTGAGTTGGAGAAAATGGCATCTAAAATGCCAGGTTGCCATGAAGGCGGATTTGCTCTATATAAGTCAATGGTAGAAGCTGGAATGTCTGATGCAAGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

301

Amino Acids

33.83

Weight (kDa)

5.48

Isoelectric Point (pI)

53.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 640
AciI CCGC 2 cut(s) 670, 849
AcsI RAATTY 4 cut(s) 142, 426, 461, 735
AcuI CTGAAG 1 cut(s) 615
AcyI GRCGYC 1 cut(s) 32
AfaI GTAC 4 cut(s) 38, 194, 202, 627
AgsI TTSAA 3 cut(s) 614, 682, 798
AjnI CCWGG 3 cut(s) 466, 484, 832
AluBI AGCT 7 cut(s) 43, 341, 695, 726, 768, 784, 881
AluI AGCT 7 cut(s) 43, 341, 695, 726, 768, 784, 881
Alw26I GTCTC 6 cut(s) 8, 88, 261, 404, 682, 725
AlwNI CAGNNNCTG 1 cut(s) 17
AoxI GGCC 1 cut(s) 490
ApeKI GCWGC 2 cut(s) 398, 695
ApoI RAATTY 4 cut(s) 142, 426, 461, 735
AspS9I GGNCC 2 cut(s) 163, 242
AvaII GGWCC 2 cut(s) 163, 242
BanII GRGCYC 1 cut(s) 504
BbvI GCAGC 2 cut(s) 385, 682
BccI CCATC 7 cut(s) 67, 82, 129, 193, 230, 352, 501
BceAI ACGGC 1 cut(s) 19
BciT130I CCWGG 3 cut(s) 468, 486, 834
BcoDI GTCTC 6 cut(s) 8, 88, 261, 404, 682, 725
BfaI CTAG 1 cut(s) 338
BfuAI ACCTGC 1 cut(s) 640
BglI GCCNNNNNGGC 1 cut(s) 846
BisI GCNGC 2 cut(s) 399, 696
BlsI GCNGC 2 cut(s) 400, 697
Bme1390I CCNGG 3 cut(s) 468, 486, 834
Bme18I GGWCC 2 cut(s) 163, 242
BmgT120I GGNCC 2 cut(s) 163, 242
BmiI GGNNCC 1 cut(s) 164
BmrFI CCNGG 3 cut(s) 468, 486, 834
BmsI GCATC 3 cut(s) 346, 830, 883
BpuEI CTTGAG 1 cut(s) 364
BsaHI GRCGYC 1 cut(s) 32
BsaI GGTCTC 2 cut(s) 88, 682
BsaJI CCNNGG 2 cut(s) 274, 484
BseBI CCWGG 3 cut(s) 468, 486, 834
BseDI CCNNGG 2 cut(s) 274, 484
BseGI GGATG 2 cut(s) 121, 493
BseMII CTCAG 5 cut(s) 144, 590, 736, 794, 795
BseXI GCAGC 2 cut(s) 385, 682
BsgI GTGCAG 1 cut(s) 741
BshFI GGCC 1 cut(s) 492
BslFI GGGAC 1 cut(s) 176
BsmAI GTCTC 6 cut(s) 8, 88, 261, 404, 682, 725
BsmFI GGGAC 1 cut(s) 176
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 1 cut(s) 492
Bso31I GGTCTC 2 cut(s) 88, 682
Bsp1286I GDGCHC 1 cut(s) 504
Bsp1407I TGTACA 1 cut(s) 192
BspACI CCGC 2 cut(s) 670, 849
BspANI GGCC 1 cut(s) 492
BspCNI CTCAG 5 cut(s) 145, 589, 735, 793, 796
BspHI TCATGA 1 cut(s) 708
BspLI GGNNCC 1 cut(s) 164
BspMI ACCTGC 1 cut(s) 640
BspTNI GGTCTC 2 cut(s) 88, 682
BsrGI TGTACA 1 cut(s) 192
BssECI CCNNGG 2 cut(s) 274, 484
BssNI GRCGYC 1 cut(s) 32
BssT1I CCWWGG 1 cut(s) 274
Bst2UI CCWGG 3 cut(s) 468, 486, 834
Bst4CI ACNGT 2 cut(s) 200, 793
BstACI GRCGYC 1 cut(s) 32
BstAUI TGTACA 1 cut(s) 192
BstDEI CTNAG 5 cut(s) 153, 576, 722, 780, 804
BstF5I GGATG 2 cut(s) 121, 493
BstMAI GTCTC 6 cut(s) 8, 88, 261, 404, 682, 725
BstMWI GCNNNNNNNGC 3 cut(s) 40, 723, 846
BstNI CCWGG 3 cut(s) 468, 486, 834
BstSCI CCNGG 3 cut(s) 466, 484, 832
BstV1I GCAGC 2 cut(s) 385, 682
BsuRI GGCC 1 cut(s) 492
BtsCI GGATG 2 cut(s) 121, 493
BveI ACCTGC 1 cut(s) 640
CaiI CAGNNNCTG 1 cut(s) 17
CciI TCATGA 1 cut(s) 708
Cfr13I GGNCC 2 cut(s) 163, 242
CseI GACGC 1 cut(s) 40
Csp6I GTAC 4 cut(s) 37, 193, 201, 626
CviAII CATG 5 cut(s) 215, 233, 260, 709, 842
CviJI RGCY 9 cut(s) 43, 341, 492, 502, 695, 726, 768, 784, 881
CviKI_1 RGCY 9 cut(s) 43, 341, 492, 502, 695, 726, 768, 784, 881
CviQI GTAC 4 cut(s) 37, 193, 201, 626
DdeI CTNAG 5 cut(s) 153, 576, 722, 780, 804
EciI GGCGGA 1 cut(s) 864
Eco130I CCWWGG 1 cut(s) 274
Eco24I GRGCYC 1 cut(s) 504
Eco31I GGTCTC 2 cut(s) 88, 682
Eco32I GATATC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 163, 242
Eco57I CTGAAG 1 cut(s) 615
EcoO109I RGGNCCY 1 cut(s) 242
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 3 cut(s) 466, 484, 832
EcoRV GATATC 1 cut(s) 130
EcoT14I CCWWGG 1 cut(s) 274
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 1 cut(s) 274
FaeI CATG 5 cut(s) 218, 236, 263, 712, 845
FaqI GGGAC 1 cut(s) 176
FatI CATG 5 cut(s) 214, 232, 259, 708, 841
FauI CCCGC 1 cut(s) 677
Fnu4HI GCNGC 2 cut(s) 399, 696
FokI GGATG 2 cut(s) 108, 480
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 2 cut(s) 399, 696
FspBI CTAG 1 cut(s) 338
GluI GCNGC 2 cut(s) 399, 696
HaeIII GGCC 1 cut(s) 492
HgaI GACGC 1 cut(s) 40
Hin1I GRCGYC 1 cut(s) 32
Hin1II CATG 5 cut(s) 218, 236, 263, 712, 845
HincII GTYRAC 1 cut(s) 777
HindII GTYRAC 1 cut(s) 777
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 5 cut(s) 114, 254, 548, 635, 773
Hpy166II GTNNAC 1 cut(s) 777
Hpy188I TCNGA 7 cut(s) 154, 177, 282, 349, 418, 634, 892
Hpy188III TCNNGA 5 cut(s) 125, 497, 578, 602, 709
Hpy8I GTNNAC 1 cut(s) 777
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 3 cut(s) 562, 639, 839
HpyCH4III ACNGT 2 cut(s) 200, 793
HpyCH4V TGCA 6 cut(s) 11, 439, 698, 717, 758, 896
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 723, 846
HpyF3I CTNAG 5 cut(s) 153, 576, 722, 780, 804
Hsp92I GRCGYC 1 cut(s) 32
Hsp92II CATG 5 cut(s) 218, 236, 263, 712, 845
LmnI GCTCC 1 cut(s) 346
Lsp1109I GCAGC 2 cut(s) 385, 682
LweI GCATC 3 cut(s) 346, 830, 883
MaeI CTAG 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 446
MboII GAAGA 3 cut(s) 362, 626, 697
MhlI GDGCHC 1 cut(s) 504
MluCI AATT 5 cut(s) 142, 426, 461, 618, 735
MlyI GAGTC 3 cut(s) 263, 542, 782
MmeI TCCRAC 1 cut(s) 789
MnlI CCTC 5 cut(s) 233, 278, 388, 482, 598
MseI TTAA 2 cut(s) 314, 542
MspA1I CMGCKG 1 cut(s) 695
MspR9I CCNGG 3 cut(s) 468, 486, 834
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 3 cut(s) 468, 486, 834
MwoI GCNNNNNNNGC 3 cut(s) 40, 723, 846
NlaIII CATG 5 cut(s) 218, 236, 263, 712, 845
NlaIV GGNNCC 1 cut(s) 164
NmuCI GTSAC 1 cut(s) 446
PagI TCATGA 1 cut(s) 708
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 2 cut(s) 114, 635
PfoI TCCNGGA 1 cut(s) 466
PkrI GCNGC 2 cut(s) 400, 697
PleI GAGTC 3 cut(s) 262, 542, 781
PpsI GAGTC 3 cut(s) 262, 542, 781
PpuMI RGGWCCY 1 cut(s) 242
Psp5II RGGWCCY 1 cut(s) 242
Psp6I CCWGG 3 cut(s) 466, 484, 832
PspGI CCWGG 3 cut(s) 466, 484, 832
PspN4I GGNNCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 163, 242
PspPPI RGGWCCY 1 cut(s) 242
PstNI CAGNNNCTG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 695
RsaI GTAC 4 cut(s) 38, 194, 202, 627
RsaNI GTAC 4 cut(s) 37, 193, 201, 626
SaqAI TTAA 2 cut(s) 314, 542
SatI GCNGC 2 cut(s) 399, 696
Sau96I GGNCC 2 cut(s) 163, 242
SchI GAGTC 3 cut(s) 263, 542, 782
ScrFI CCNGG 3 cut(s) 468, 486, 834
SduI GDGCHC 1 cut(s) 504
SfaNI GCATC 3 cut(s) 346, 830, 883
SinI GGWCC 2 cut(s) 163, 242
SmlI CTYRAG 1 cut(s) 379
SmoI CTYRAG 1 cut(s) 379
Sse9I AATT 5 cut(s) 142, 426, 461, 618, 735
SsiI CCGC 2 cut(s) 670, 849
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 3 cut(s) 466, 484, 832
StyI CCWWGG 1 cut(s) 274
TaaI ACNGT 2 cut(s) 200, 793
TaqI TCGA 1 cut(s) 588
TaqII GACCGA 1 cut(s) 126
TasI AATT 5 cut(s) 142, 426, 461, 618, 735
TatI WGTACW 1 cut(s) 192
TfiI GAWTC 2 cut(s) 114, 635
Tru1I TTAA 2 cut(s) 314, 542
Tru9I TTAA 2 cut(s) 314, 542
TseFI GTSAC 1 cut(s) 446
TseI GCWGC 2 cut(s) 398, 695
Tsp45I GTSAC 1 cut(s) 446
TspDTI ATGAA 4 cut(s) 646, 697, 725, 858
TspGWI ACGGA 2 cut(s) 38, 375
VpaK11BI GGWCC 2 cut(s) 163, 242
XapI RAATTY 4 cut(s) 142, 426, 461, 735
XspI CTAG 1 cut(s) 338
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.