Rw5G046500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000139
Physical Location & Seq
Reverse (-)
80648743 .. 80649357
615 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046500.1

Sequence Viewer

Length: 615 bp
ATGTCGAGCTGCGTCGTGGATCTCCCTGAAGATATTATAGTCGAGATTCTGTGCCGTTTACCGGTCAAAACTTTGATCCGGTTCACTTGTGTCTCGAAACAGTGGCGTTCTCTGATCATTTCTGATCCTAAATTTGGAAAATCTCACCTCCAACTAGCTTCACAGCTGAGAACCCTCCGTAGAAAAGTCCTCCTCACCTCCTACCCTAAACTCAGAGATCCAGGTCCAATTTCCTATTCTCATTACGGTAGCTTTTCAAAGCTACCCCCTCGATTTCAATCGTTAGAGGATGACTTTTCAGTCAAAAATTTCACCATCCCATGTGAGAAGAGTAAGGATATAAGAGTAATGGCCTCCTGCAACGGTTTGGTACTTCTAGGCGAAAGCGATAATTGTATTGATTACAAAAGCTTGTCTATCTGGAACCTGTCGACTGGATTCTTCCGCAACCTACCTGGTCCAAGTTCCCTGGCGACGTCAAGACAATCATCCAATGATGAGTACCTGTTGTTTGTATATTCTGGTTTTGGTCATGTGTCCGCCAGTGACGACTACAAACTTGTTTTCATAAAACCTGCCCTTGGTGTTCCACCGGAGCCCATGTCTTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

204

Amino Acids

22.86

Weight (kDa)

8.88

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 43 2e-11 F-box domain
F-box-like PF12937 7 - 41 5.3e-08 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 299
AatII GACGTC 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 583
AccI GTMKAC 1 cut(s) 431
AciI CCGC 2 cut(s) 445, 540
AclWI GGATC 4 cut(s) 27, 70, 119, 212
AcsI RAATTY 2 cut(s) 131, 307
AcuI CTGAAG 1 cut(s) 48
AcyI GRCGYC 1 cut(s) 476
AfaI GTAC 2 cut(s) 372, 503
AfiI CCNNNNNNNGG 3 cut(s) 61, 134, 581
AgeI ACCGGT 1 cut(s) 61
AgsI TTSAA 2 cut(s) 258, 278
AjnI CCWGG 3 cut(s) 220, 454, 468
AjuI GAANNNNNNNTTGG 2 cut(s) 220, 252
AluBI AGCT 6 cut(s) 9, 158, 166, 252, 262, 411
AluI AGCT 6 cut(s) 9, 158, 166, 252, 262, 411
Alw26I GTCTC 1 cut(s) 97
AlwI GGATC 4 cut(s) 27, 70, 119, 212
AoxI GGCC 1 cut(s) 351
ApeKI GCWGC 1 cut(s) 9
ApoI RAATTY 2 cut(s) 131, 307
AsiGI ACCGGT 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 224, 458
AsuHPI GGTGA 3 cut(s) 137, 187, 304
AvaII GGWCC 2 cut(s) 224, 458
BanII GRGCYC 1 cut(s) 600
BbsI GAAGAC 1 cut(s) 597
BccI CCATC 1 cut(s) 323
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 3 cut(s) 222, 456, 470
BclI TGATCA 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 97
BfaI CTAG 2 cut(s) 155, 377
BfuAI ACCTGC 1 cut(s) 583
BisI GCNGC 1 cut(s) 10
BlsI GCNGC 1 cut(s) 11
Bme1390I CCNGG 3 cut(s) 222, 456, 470
Bme18I GGWCC 2 cut(s) 224, 458
BmgT120I GGNCC 2 cut(s) 224, 458
BmiI GGNNCC 2 cut(s) 425, 597
BmrFI CCNGG 3 cut(s) 222, 456, 470
BpiI GAAGAC 1 cut(s) 597
BsaBI GATNNNNATC 1 cut(s) 277
BsaHI GRCGYC 1 cut(s) 476
BsaJI CCNNGG 2 cut(s) 468, 580
BsaWI WCCGGW 3 cut(s) 61, 78, 592
BsaXI ACNNNNNCTCC 1 cut(s) 587
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 134, 581
Bse118I RCCGGY 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 439, 543
Bse8I GATNNNNATC 1 cut(s) 277
BseBI CCWGG 3 cut(s) 222, 456, 470
BseDI CCNNGG 2 cut(s) 468, 580
BseGI GGATG 3 cut(s) 295, 315, 488
BseJI GATNNNNATC 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 61, 134, 581
BseMII CTCAG 2 cut(s) 158, 226
BseNI ACTGG 2 cut(s) 439, 543
BseRI GAGGAG 1 cut(s) 182
BshFI GGCC 1 cut(s) 353
BshTI ACCGGT 1 cut(s) 61
BsiSI CCGG 3 cut(s) 62, 79, 593
BslI CCNNNNNNNGG 3 cut(s) 61, 134, 581
BsmAI GTCTC 1 cut(s) 97
BsnI GGCC 1 cut(s) 353
Bsp1286I GDGCHC 1 cut(s) 600
Bsp143I GATC 5 cut(s) 19, 75, 114, 124, 217
BspACI CCGC 2 cut(s) 445, 540
BspANI GGCC 1 cut(s) 353
BspCNI CTCAG 2 cut(s) 159, 225
BspLI GGNNCC 2 cut(s) 425, 597
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 4 cut(s) 27, 70, 119, 212
BsrFI RCCGGY 1 cut(s) 61
BsrI ACTGG 2 cut(s) 439, 543
BssAI RCCGGY 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 468, 580
BssMI GATC 5 cut(s) 19, 75, 114, 124, 217
BssNI GRCGYC 1 cut(s) 476
BssT1I CCWWGG 1 cut(s) 580
Bst2UI CCWGG 3 cut(s) 222, 456, 470
Bst4CI ACNGT 3 cut(s) 102, 248, 365
Bst6I CTCTTC 1 cut(s) 323
BstACI GRCGYC 1 cut(s) 476
BstDEI CTNAG 2 cut(s) 167, 212
BstF5I GGATG 3 cut(s) 295, 315, 488
BstKTI GATC 5 cut(s) 22, 78, 117, 127, 220
BstMAI GTCTC 1 cut(s) 97
BstMBI GATC 5 cut(s) 19, 75, 114, 124, 217
BstNI CCWGG 3 cut(s) 222, 456, 470
BstSCI CCNGG 3 cut(s) 220, 454, 468
BstV2I GAAGAC 1 cut(s) 597
BstX2I RGATCY 2 cut(s) 19, 217
BstYI RGATCY 2 cut(s) 19, 217
BsuRI GGCC 1 cut(s) 353
BtsCI GGATG 3 cut(s) 295, 315, 488
BtsIMutI CAGTG 2 cut(s) 107, 550
BveI ACCTGC 1 cut(s) 583
Cfr10I RCCGGY 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 224, 458
CsiI ACCWGGT 1 cut(s) 454
Csp6I GTAC 2 cut(s) 371, 502
CspAI ACCGGT 1 cut(s) 61
CviAII CATG 3 cut(s) 321, 533, 601
CviJI RGCY 8 cut(s) 9, 158, 166, 252, 262, 353, 411, 598
CviKI_1 RGCY 8 cut(s) 9, 158, 166, 252, 262, 353, 411, 598
CviQI GTAC 2 cut(s) 371, 502
DdeI CTNAG 2 cut(s) 167, 212
DpnI GATC 5 cut(s) 21, 77, 116, 126, 219
DpnII GATC 5 cut(s) 19, 75, 114, 124, 217
DrdI GACNNNNNNGTC 1 cut(s) 299
DseDI GACNNNNNNGTC 1 cut(s) 299
Eam1104I CTCTTC 1 cut(s) 323
EarI CTCTTC 1 cut(s) 323
EciI GGCGGA 1 cut(s) 529
Eco130I CCWWGG 1 cut(s) 580
Eco24I GRGCYC 1 cut(s) 600
Eco47I GGWCC 2 cut(s) 224, 458
Eco57I CTGAAG 1 cut(s) 48
EcoRII CCWGG 3 cut(s) 220, 454, 468
EcoT14I CCWWGG 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 600
ErhI CCWWGG 1 cut(s) 580
FaeI CATG 3 cut(s) 324, 536, 604
FaiI YATR 7 cut(s) 38, 322, 341, 517, 534, 569, 602
FatI CATG 3 cut(s) 320, 532, 600
FbaI TGATCA 1 cut(s) 114
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 1 cut(s) 10
FokI GGATG 3 cut(s) 302, 302, 475
FriOI GRGCYC 1 cut(s) 600
Fsp4HI GCNGC 1 cut(s) 10
FspBI CTAG 2 cut(s) 155, 377
GluI GCNGC 1 cut(s) 10
HaeIII GGCC 1 cut(s) 353
HapII CCGG 3 cut(s) 62, 79, 593
Hin1I GRCGYC 1 cut(s) 476
Hin1II CATG 3 cut(s) 324, 536, 604
HincII GTYRAC 1 cut(s) 432
HindII GTYRAC 1 cut(s) 432
HindIII AAGCTT 1 cut(s) 409
HinfI GANTC 2 cut(s) 46, 438
HpaII CCGG 3 cut(s) 62, 79, 593
HphI GGTGA 3 cut(s) 137, 187, 304
Hpy166II GTNNAC 3 cut(s) 59, 84, 432
Hpy188I TCNGA 4 cut(s) 114, 124, 215, 614
Hpy188III TCNNGA 4 cut(s) 43, 94, 421, 480
Hpy8I GTNNAC 3 cut(s) 59, 84, 432
Hpy99I CGWCG 2 cut(s) 17, 478
HpyCH4III ACNGT 3 cut(s) 102, 248, 365
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 2 cut(s) 167, 212
HpySE526I ACGT 1 cut(s) 476
Hsp92I GRCGYC 1 cut(s) 476
Hsp92II CATG 3 cut(s) 324, 536, 604
Ksp22I TGATCA 1 cut(s) 114
Kzo9I GATC 5 cut(s) 19, 75, 114, 124, 217
LmnI GCTCC 1 cut(s) 595
MabI ACCWGGT 1 cut(s) 454
MaeI CTAG 2 cut(s) 155, 377
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 1 cut(s) 545
MalI GATC 5 cut(s) 21, 77, 116, 126, 219
MboI GATC 5 cut(s) 19, 75, 114, 124, 217
MboII GAAGA 4 cut(s) 41, 340, 433, 597
MflI RGATCY 2 cut(s) 19, 217
MhlI GDGCHC 1 cut(s) 600
MluCI AATT 4 cut(s) 131, 228, 307, 391
MmeI TCCRAC 1 cut(s) 175
MnlI CCTC 8 cut(s) 158, 185, 200, 203, 208, 279, 280, 364
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 62, 79, 593
MspR9I CCNGG 3 cut(s) 222, 456, 470
MvaI CCWGG 3 cut(s) 222, 456, 470
NdeII GATC 5 cut(s) 19, 75, 114, 124, 217
NlaIII CATG 3 cut(s) 324, 536, 604
NlaIV GGNNCC 2 cut(s) 425, 597
NmuCI GTSAC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 46, 438
PinAI ACCGGT 1 cut(s) 61
PkrI GCNGC 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 220, 454, 468
PspGI CCWGG 3 cut(s) 220, 454, 468
PspN4I GGNNCC 2 cut(s) 425, 597
PspPI GGNCC 2 cut(s) 224, 458
PsuI RGATCY 2 cut(s) 19, 217
PvuII CAGCTG 1 cut(s) 166
RsaI GTAC 2 cut(s) 372, 503
RsaNI GTAC 2 cut(s) 371, 502
SalI GTCGAC 1 cut(s) 430
SatI GCNGC 1 cut(s) 10
Sau3AI GATC 5 cut(s) 19, 75, 114, 124, 217
Sau96I GGNCC 2 cut(s) 224, 458
ScrFI CCNGG 3 cut(s) 222, 456, 470
SduI GDGCHC 1 cut(s) 600
SexAI ACCWGGT 1 cut(s) 454
SinI GGWCC 2 cut(s) 224, 458
Sse9I AATT 4 cut(s) 131, 228, 307, 391
SsiI CCGC 2 cut(s) 445, 540
SspMI CTAG 2 cut(s) 155, 377
StyD4I CCNGG 3 cut(s) 220, 454, 468
StyI CCWWGG 1 cut(s) 580
TaaI ACNGT 3 cut(s) 102, 248, 365
TaiI ACGT 1 cut(s) 479
TaqI TCGA 5 cut(s) 5, 42, 95, 271, 431
TasI AATT 4 cut(s) 131, 228, 307, 391
TfiI GAWTC 2 cut(s) 46, 438
TscAI CASTG 2 cut(s) 107, 550
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 9
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 1 cut(s) 556
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 107, 550
VpaK11BI GGWCC 2 cut(s) 224, 458
XapI RAATTY 2 cut(s) 131, 307
XmiI GTMKAC 1 cut(s) 431
XspI CTAG 2 cut(s) 155, 377
ZraI GACGTC 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.