RchiOBHm_Chr5g0075941

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000139
Physical Location & Seq
Reverse (-)
81653290 .. 81654218
929 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35064

Sequence Viewer

Length: 801 bp
ATGGGCTCCTGTAATGGTTTGGTGCTTGTAGGCCGACCCTGTCGCAATCATTACAAGAGCTTGTTTATCTGGAACCCATCTACTGGATTCTTCCGCAAGATACCTCATCCAAGTTTCAGGATGAAGTCAGGTAGATACTTTTTGAATTATGGTTTTGGTCATGTGTCCGCCAGCGACGACTACAAATTTGTGTCCGTAGTACCTGACCCCAGTGATATGCTGGAACTCCTTACTCGTCATACGCATGCTGGGTCAATAGACACGGGACTTTTTAATGGAGCAATTCACTGGGTCACTCCCTGCGGAAATAAGAATTTGGACCCAGTTATATATGCTTTTAGTTTGGCCGAGGAGGAGTTCCGGCGAGTGCCATTGCCACCTGTTTTGTGGCAAAATGAAGAAGACAGAAATCCGACAAAGATAACAACTCTGGTTCATTTAGGAGGATACCTTTGCATATGGTCTCGGAAGTGTTTTGATACTCAGGGAGGTGAAGTTTGGGCGATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTCAATTTTATATACACGATTTCCGCAATGTCTTTGATGTAGAACAGAGTCCATGGGATCTGTGTTTTATTACAGAAGGCGATACGATGGTGTTAAGACTGAATAAGGAGTTGTTATGGATTGAATGCCGTAATGAAGAGAAGCCAGTCTGCAGTGGAAGGTATAGGCTTGAGAAGGTACAACCTAAGGTGTCAAACCTGGCGTTTTATTCTCGTGCGACCATATACGATGAAACTCGATCTAGTTTCTGTAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

266

Amino Acids

30.78

Weight (kDa)

6.7

Isoelectric Point (pI)

44.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 3 - 216 8.2e-10 F-box associated beta propeller domain
FBA_3 PF08268 11 - 181 7.4e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 520
AccB7I CCANNNNNTGG 1 cut(s) 83
AciI CCGC 4 cut(s) 94, 168, 303, 568
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 345
AcsI RAATTY 2 cut(s) 185, 313
AfaI GTAC 2 cut(s) 201, 723
AfiI CCNNNNNNNGG 1 cut(s) 83
AgsI TTSAA 3 cut(s) 145, 548, 668
AjnI CCWGG 1 cut(s) 741
AluBI AGCT 2 cut(s) 60, 798
AluI AGCT 2 cut(s) 60, 798
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 1 cut(s) 609
AoxI GGCC 2 cut(s) 31, 345
ApoI RAATTY 2 cut(s) 185, 313
ArsI GACNNNNNNTTYG 2 cut(s) 170, 202
AspS9I GGNCC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 503
AvaII GGWCC 1 cut(s) 319
AxyI CCTNAGG 1 cut(s) 729
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 756
BbsI GAAGAC 1 cut(s) 408
BccI CCATC 2 cut(s) 85, 625
BceAI ACGGC 1 cut(s) 657
BciT130I CCWGG 1 cut(s) 743
BciVI GTATCC 1 cut(s) 440
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 1 cut(s) 786
BfmI CTRYAG 2 cut(s) 694, 793
BfuI GTATCC 1 cut(s) 440
Bme1390I CCNGG 1 cut(s) 743
Bme18I GGWCC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 319
BmiI GGNNCC 4 cut(s) 7, 74, 321, 522
BmrFI CCNGG 1 cut(s) 743
BmrI ACTGGG 3 cut(s) 204, 298, 317
BmuI ACTGGG 3 cut(s) 204, 298, 317
BpiI GAAGAC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 734
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 348, 596
BsaXI ACNNNNNCTCC 2 cut(s) 480, 510
Bsc4I CCNNNNNNNGG 1 cut(s) 83
Bse1I ACTGG 5 cut(s) 88, 210, 293, 323, 689
Bse21I CCTNAGG 1 cut(s) 729
Bse3DI GCAATG 2 cut(s) 371, 577
BseBI CCWGG 1 cut(s) 743
BseDI CCNNGG 2 cut(s) 348, 596
BseGI GGATG 2 cut(s) 106, 126
BseLI CCNNNNNNNGG 1 cut(s) 83
BseMI GCAATG 2 cut(s) 371, 577
BseMII CTCAG 1 cut(s) 497
BseNI ACTGG 5 cut(s) 88, 210, 293, 323, 689
BseRI GAGGAG 2 cut(s) 365, 368
BseYI CCCAGC 1 cut(s) 248
BshFI GGCC 2 cut(s) 33, 347
BshNI GGYRCC 1 cut(s) 520
BsiSI CCGG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 83
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 2 cut(s) 33, 347
Bso31I GGTCTC 1 cut(s) 468
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 601, 782
Bsp19I CCATGG 1 cut(s) 596
BspACI CCGC 4 cut(s) 94, 168, 303, 568
BspANI GGCC 2 cut(s) 33, 347
BspCNI CTCAG 1 cut(s) 496
BspLI GGNNCC 4 cut(s) 7, 74, 321, 522
BspMAI CTGCAG 1 cut(s) 698
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 1 cut(s) 520
BspTNI GGTCTC 1 cut(s) 468
BsrDI GCAATG 2 cut(s) 371, 577
BsrI ACTGG 5 cut(s) 88, 210, 293, 323, 689
BssECI CCNNGG 2 cut(s) 348, 596
BssMI GATC 2 cut(s) 601, 782
BssSI CACGAG 1 cut(s) 756
BssT1I CCWWGG 1 cut(s) 596
Bst2BI CACGAG 1 cut(s) 756
Bst2UI CCWGG 1 cut(s) 743
Bst6I CTCTTC 1 cut(s) 675
BstC8I GCNNGC 2 cut(s) 172, 246
BstDEI CTNAG 2 cut(s) 483, 729
BstDSI CCRYGG 1 cut(s) 596
BstF5I GGATG 2 cut(s) 106, 126
BstKTI GATC 2 cut(s) 604, 785
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 2 cut(s) 601, 782
BstNI CCWGG 1 cut(s) 743
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 1 cut(s) 741
BstSFI CTRYAG 2 cut(s) 694, 793
BstV2I GAAGAC 1 cut(s) 408
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 729
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 2 cut(s) 33, 347
BtgI CCRYGG 1 cut(s) 596
BtgZI GCGATG 1 cut(s) 518
BtsCI GGATG 2 cut(s) 106, 126
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 3 cut(s) 217, 286, 703
Cac8I GCNNGC 2 cut(s) 172, 246
Cfr13I GGNCC 1 cut(s) 319
Csp6I GTAC 2 cut(s) 200, 722
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 3 cut(s) 161, 245, 597
CviJI RGCY 7 cut(s) 6, 33, 60, 347, 688, 712, 798
CviKI_1 RGCY 7 cut(s) 6, 33, 60, 347, 688, 712, 798
CviQI GTAC 2 cut(s) 200, 722
DdeI CTNAG 2 cut(s) 483, 729
DpnI GATC 2 cut(s) 603, 784
DpnII GATC 2 cut(s) 601, 782
EaeI YGGCCR 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 675
EarI CTCTTC 1 cut(s) 675
EciI GGCGGA 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 596
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 468
Eco47I GGWCC 1 cut(s) 319
Eco81I CCTNAGG 1 cut(s) 729
EcoRII CCWGG 1 cut(s) 741
EcoT14I CCWWGG 1 cut(s) 596
EcoT38I GRGCYC 1 cut(s) 8
ErhI CCWWGG 1 cut(s) 596
FaeI CATG 3 cut(s) 164, 248, 600
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 160, 244, 596
FauNDI CATATG 1 cut(s) 458
FokI GGATG 2 cut(s) 93, 133
FriOI GRGCYC 1 cut(s) 8
FspBI CTAG 1 cut(s) 786
GsaI CCCAGC 1 cut(s) 252
HaeIII GGCC 2 cut(s) 33, 347
HapII CCGG 1 cut(s) 361
Hin1II CATG 3 cut(s) 164, 248, 600
HinfI GANTC 3 cut(s) 87, 527, 592
HpaII CCGG 1 cut(s) 361
HphI GGTGA 1 cut(s) 503
Hpy188I TCNGA 2 cut(s) 414, 468
Hpy188III TCNNGA 2 cut(s) 70, 118
Hpy99I CGWCG 1 cut(s) 179
HpyAV CCTTC 3 cut(s) 614, 696, 712
HpyCH4V TGCA 2 cut(s) 456, 696
HpyF3I CTNAG 2 cut(s) 483, 729
Hsp92II CATG 3 cut(s) 164, 248, 600
Kzo9I GATC 2 cut(s) 601, 782
LmnI GCTCC 2 cut(s) 11, 278
MaeI CTAG 1 cut(s) 786
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 603, 784
MboI GATC 2 cut(s) 601, 782
MboII GAAGA 4 cut(s) 82, 410, 413, 692
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 145, 185, 282, 313, 548
MlyI GAGTC 1 cut(s) 601
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 5 cut(s) 114, 343, 346, 437, 482
MseI TTAA 3 cut(s) 273, 537, 638
MslI CAYNNNNRTG 1 cut(s) 243
MspI CCGG 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 743
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 1 cut(s) 743
NcoI CCATGG 1 cut(s) 596
NdeI CATATG 1 cut(s) 458
NdeII GATC 2 cut(s) 601, 782
NlaIII CATG 3 cut(s) 164, 248, 600
NlaIV GGNNCC 4 cut(s) 7, 74, 321, 522
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 1 cut(s) 292
NspI RCATGY 1 cut(s) 248
PaeI GCATGC 1 cut(s) 248
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 87, 527
PflFI GACNNNGTC 1 cut(s) 39
PflMI CCANNNNNTGG 1 cut(s) 83
PleI GAGTC 1 cut(s) 600
PpsI GAGTC 1 cut(s) 600
Psp6I CCWGG 1 cut(s) 741
PspFI CCCAGC 1 cut(s) 248
PspGI CCWGG 1 cut(s) 741
PspN4I GGNNCC 4 cut(s) 7, 74, 321, 522
PspPI GGNCC 1 cut(s) 319
PstI CTGCAG 1 cut(s) 698
PsuI RGATCY 1 cut(s) 601
PsyI GACNNNGTC 1 cut(s) 39
RsaI GTAC 2 cut(s) 201, 723
RsaNI GTAC 2 cut(s) 200, 722
RseI CAYNNNNRTG 1 cut(s) 243
SaqAI TTAA 3 cut(s) 273, 537, 638
Sau3AI GATC 2 cut(s) 601, 782
Sau96I GGNCC 1 cut(s) 319
SchI GAGTC 1 cut(s) 601
ScrFI CCNGG 1 cut(s) 743
SduI GDGCHC 1 cut(s) 8
SfcI CTRYAG 2 cut(s) 694, 793
SinI GGWCC 1 cut(s) 319
SmiMI CAYNNNNRTG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 713
SmoI CTYRAG 1 cut(s) 713
SphI GCATGC 1 cut(s) 248
Sse9I AATT 5 cut(s) 145, 185, 282, 313, 548
SsiI CCGC 4 cut(s) 94, 168, 303, 568
SspMI CTAG 1 cut(s) 786
StyD4I CCNGG 1 cut(s) 741
StyI CCWWGG 1 cut(s) 596
TaqI TCGA 1 cut(s) 781
TasI AATT 5 cut(s) 145, 185, 282, 313, 548
TfiI GAWTC 2 cut(s) 87, 527
Tru1I TTAA 3 cut(s) 273, 537, 638
Tru9I TTAA 3 cut(s) 273, 537, 638
TscAI CASTG 3 cut(s) 217, 293, 703
TseFI GTSAC 1 cut(s) 292
Tsp45I GTSAC 1 cut(s) 292
TspDTI ATGAA 5 cut(s) 137, 411, 425, 693, 789
TspGWI ACGGA 1 cut(s) 184
TspRI CASTG 3 cut(s) 217, 293, 703
Tth111I GACNNNGTC 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 319
XapI RAATTY 2 cut(s) 185, 313
XceI RCATGY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 2 cut(s) 217, 384
XspI CTAG 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.