Rh5CG545700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000139
Physical Location & Seq
Reverse (-)
76105354 .. 76106220
867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG545700.1

Sequence Viewer

Length: 867 bp
ATGGAAGAAATGGGCTCCTGCAATGGTTTGGTACTTGTAGGCCAACCGTATCGCGATCATTACGAGAACTTGTCTATCTGGAACCTATCTACTGGATTCTTCCGCAAGATACCTAATCCAAGTTTCAGGGTGAAGTCTGCAATGGTAATCGGTAGATACTTTATAAATTATGGTTTTGGTCCTGTGTCCGCCAGCGACGACTACAAACTTGTCTTCCTAATACCTGCCCCTAGTGATATGCTGGAAGTCCATATCTTCTCTCTGAGTGCCAACATTTGGAAAGTTATTAGAGCTCCTTACTCGTCATGGCCAGGCTGGATTAATGGACAGGGGACTTTTTCAAATGGAGCAATTCACTGGGTCATTCCCCGCGGAAATGAGACTTTGAACCCAGTTATATATGCTTTTATTTTGGCAGAGGAGAACTTCCGGCTAGTGCCATTGCCACTTGTTTTGTGGCAAATTGAAGAAGGCAGAAATCAGACAGAGATAACAATTCTGGTTCATTTAGGAGGATACCTTTGCATATGGTCTCGGGGCCGTTATTTTCTTGAGGAAGGTCAAGTTTGGGCGATGACACAGTATGGGGTGCCTGAATCTTGGGTTAAACTCCTTCAATTTAATACACTCGATCTCCGCCATATCTTTTCTGGATACTGCCTATGGGATCTGTGTTTCATTACAGAAAGTGATACGATGGTGTTAAGACTGAATAAGGAGTTGTTATGGATTGAATACCGTAATGAAGAGAAGCCGGTCTGCAGTGGAAGGTATAGGCTTGAGAAGGTACAGCCTAAGGTGCAGAACCTGGCATTTTATTTTCGCGCGACCGTATATGATGAAACTCTAGTTTCTGTAGCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

288

Amino Acids

33.39

Weight (kDa)

5.81

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 589
AccB7I CCANNNNNTGG 1 cut(s) 276
AccII CGCG 4 cut(s) 54, 372, 825, 827
AciI CCGC 5 cut(s) 103, 189, 370, 372, 637
AclWI GGATC 1 cut(s) 675
AcoI YGGCCR 1 cut(s) 308
AfaI GTAC 2 cut(s) 33, 789
AfiI CCNNNNNNNGG 1 cut(s) 276
AgsI TTSAA 5 cut(s) 342, 388, 467, 617, 734
AjnI CCWGG 2 cut(s) 310, 807
AluBI AGCT 2 cut(s) 293, 860
AluI AGCT 2 cut(s) 293, 860
Alw21I GWGCWC 1 cut(s) 295
Alw26I GTCTC 2 cut(s) 374, 537
AlwI GGATC 1 cut(s) 675
AlwNI CAGNNNCTG 1 cut(s) 808
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 3 cut(s) 40, 308, 538
AseI ATTAAT 1 cut(s) 321
AspLEI GCGC 1 cut(s) 827
AspS9I GGNCC 2 cut(s) 179, 538
AsuHPI GGTGA 1 cut(s) 142
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 1 cut(s) 179
AxyI CCTNAGG 1 cut(s) 795
BaeI ACNNNNGTAYC 2 cut(s) 684, 717
BalI TGGCCA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 589
BanII GRGCYC 2 cut(s) 17, 295
BbsI GAAGAC 1 cut(s) 205
Bbv12I GWGCWC 1 cut(s) 295
BccI CCATC 1 cut(s) 691
BceAI ACGGC 1 cut(s) 525
BciT130I CCWGG 2 cut(s) 312, 809
BciVI GTATCC 2 cut(s) 509, 647
BcoDI GTCTC 2 cut(s) 374, 537
BfaI CTAG 3 cut(s) 231, 434, 848
BfmI CTRYAG 2 cut(s) 760, 855
BfuAI ACCTGC 1 cut(s) 232
BfuI GTATCC 2 cut(s) 509, 647
Bme1390I CCNGG 2 cut(s) 312, 809
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 2 cut(s) 179, 538
BmiI GGNNCC 4 cut(s) 16, 83, 539, 591
BmrFI CCNGG 2 cut(s) 312, 809
BmrI ACTGGG 2 cut(s) 367, 386
BmuI ACTGGG 2 cut(s) 367, 386
BpiI GAAGAC 1 cut(s) 205
BpuEI CTTGAG 2 cut(s) 572, 800
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 618, 648
Bsc4I CCNNNNNNNGG 1 cut(s) 276
Bse118I RCCGGY 1 cut(s) 754
Bse1I ACTGG 3 cut(s) 97, 362, 392
Bse21I CCTNAGG 1 cut(s) 795
Bse3DI GCAATG 3 cut(s) 28, 147, 440
BseBI CCWGG 2 cut(s) 312, 809
BseDI CCNNGG 1 cut(s) 370
BseLI CCNNNNNNNGG 1 cut(s) 276
BseMI GCAATG 3 cut(s) 28, 147, 440
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 3 cut(s) 97, 362, 392
BseRI GAGGAG 1 cut(s) 434
BsgI GTGCAG 1 cut(s) 821
Bsh1236I CGCG 4 cut(s) 54, 372, 825, 827
Bsh1285I CGRYCG 1 cut(s) 831
BshFI GGCC 3 cut(s) 42, 310, 540
BshNI GGYRCC 1 cut(s) 589
BsiEI CGRYCG 1 cut(s) 831
BsiHKAI GWGCWC 1 cut(s) 295
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 430, 755
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 276
BsmAI GTCTC 2 cut(s) 374, 537
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 3 cut(s) 42, 310, 540
Bso31I GGTCTC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 2 cut(s) 17, 295
Bsp143I GATC 3 cut(s) 55, 631, 667
Bsp68I TCGCGA 1 cut(s) 54
BspACI CCGC 5 cut(s) 103, 189, 370, 372, 637
BspANI GGCC 3 cut(s) 42, 310, 540
BspCNI CTCAG 1 cut(s) 255
BspFNI CGCG 4 cut(s) 54, 372, 825, 827
BspLI GGNNCC 4 cut(s) 16, 83, 539, 591
BspMAI CTGCAG 1 cut(s) 764
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 1 cut(s) 675
BspT107I GGYRCC 1 cut(s) 589
BspTNI GGTCTC 1 cut(s) 537
BsrDI GCAATG 3 cut(s) 28, 147, 440
BsrFI RCCGGY 1 cut(s) 754
BsrI ACTGG 3 cut(s) 97, 362, 392
BssAI RCCGGY 1 cut(s) 754
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 3 cut(s) 55, 631, 667
Bst2UI CCWGG 2 cut(s) 312, 809
Bst4CI ACNGT 4 cut(s) 48, 582, 740, 832
Bst6I CTCTTC 1 cut(s) 741
BstC8I GCNNGC 1 cut(s) 193
BstDEI CTNAG 2 cut(s) 263, 795
BstDSI CCRYGG 1 cut(s) 370
BstFNI CGCG 4 cut(s) 54, 372, 825, 827
BstHHI GCGC 1 cut(s) 827
BstKTI GATC 3 cut(s) 58, 634, 670
BstMAI GTCTC 2 cut(s) 374, 537
BstMBI GATC 3 cut(s) 55, 631, 667
BstMCI CGRYCG 1 cut(s) 831
BstMWI GCNNNNNNNGC 1 cut(s) 799
BstNI CCWGG 2 cut(s) 312, 809
BstSCI CCNGG 2 cut(s) 310, 807
BstSFI CTRYAG 2 cut(s) 760, 855
BstUI CGCG 4 cut(s) 54, 372, 825, 827
BstV2I GAAGAC 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 667
BstYI RGATCY 1 cut(s) 667
Bsu36I CCTNAGG 1 cut(s) 795
BsuI GTATCC 2 cut(s) 509, 647
BsuRI GGCC 3 cut(s) 42, 310, 540
BtgI CCRYGG 1 cut(s) 370
BtgZI GCGATG 1 cut(s) 587
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 355, 769
BtuMI TCGCGA 1 cut(s) 54
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 193
CaiI CAGNNNCTG 1 cut(s) 808
CfoI GCGC 1 cut(s) 827
Cfr10I RCCGGY 1 cut(s) 754
Cfr13I GGNCC 2 cut(s) 179, 538
Cfr42I CCGCGG 1 cut(s) 373
Csp6I GTAC 2 cut(s) 32, 788
CspCI CAANNNNNGTGG 2 cut(s) 435, 470
CviAII CATG 1 cut(s) 306
CviQI GTAC 2 cut(s) 32, 788
DdeI CTNAG 2 cut(s) 263, 795
DpnI GATC 3 cut(s) 57, 633, 669
DpnII GATC 3 cut(s) 55, 631, 667
EaeI YGGCCR 1 cut(s) 308
Eam1104I CTCTTC 1 cut(s) 741
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 2 cut(s) 178, 626
Ecl136II GAGCTC 1 cut(s) 293
Eco24I GRGCYC 2 cut(s) 17, 295
Eco31I GGTCTC 1 cut(s) 537
Eco47I GGWCC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 293
Eco81I CCTNAGG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 534
EcoICRI GAGCTC 1 cut(s) 293
EcoRII CCWGG 2 cut(s) 310, 807
EcoT38I GRGCYC 2 cut(s) 17, 295
FaeI CATG 1 cut(s) 309
FaqI GGGAC 1 cut(s) 346
FatI CATG 1 cut(s) 305
FauI CCCGC 1 cut(s) 377
FauNDI CATATG 1 cut(s) 527
FriOI GRGCYC 2 cut(s) 17, 295
FspBI CTAG 3 cut(s) 231, 434, 848
GlaI GCGC 1 cut(s) 826
HaeIII GGCC 3 cut(s) 42, 310, 540
HapII CCGG 2 cut(s) 430, 755
HhaI GCGC 1 cut(s) 827
Hin1II CATG 1 cut(s) 309
Hin6I GCGC 1 cut(s) 825
HinP1I GCGC 1 cut(s) 825
HinfI GANTC 2 cut(s) 96, 596
HpaII CCGG 2 cut(s) 430, 755
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 2 cut(s) 264, 483
Hpy188III TCNNGA 4 cut(s) 53, 79, 551, 651
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 464, 551, 623, 762, 778
HpyCH4III ACNGT 4 cut(s) 48, 582, 740, 832
HpyCH4V TGCA 5 cut(s) 21, 140, 525, 762, 802
HpyF10VI GCNNNNNNNGC 1 cut(s) 799
HpyF3I CTNAG 2 cut(s) 263, 795
Hsp92II CATG 1 cut(s) 309
HspAI GCGC 1 cut(s) 825
KspI CCGCGG 1 cut(s) 373
Kzo9I GATC 3 cut(s) 55, 631, 667
LmnI GCTCC 3 cut(s) 20, 298, 347
MaeI CTAG 3 cut(s) 231, 434, 848
MalI GATC 3 cut(s) 57, 633, 669
MboI GATC 3 cut(s) 55, 631, 667
MboII GAAGA 6 cut(s) 17, 91, 205, 247, 479, 758
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 17, 295
MlsI TGGCCA 1 cut(s) 310
MluCI AATT 5 cut(s) 166, 351, 462, 495, 617
MluNI TGGCCA 1 cut(s) 310
MnlI CCTC 3 cut(s) 412, 506, 547
Mox20I TGGCCA 1 cut(s) 310
MscI TGGCCA 1 cut(s) 310
MseI TTAA 4 cut(s) 321, 606, 621, 704
Msp20I TGGCCA 1 cut(s) 310
MspA1I CMGCKG 1 cut(s) 372
MspI CCGG 2 cut(s) 430, 755
MspR9I CCNGG 2 cut(s) 312, 809
MvaI CCWGG 2 cut(s) 312, 809
MvnI CGCG 4 cut(s) 54, 372, 825, 827
MwoI GCNNNNNNNGC 1 cut(s) 799
NdeI CATATG 1 cut(s) 527
NdeII GATC 3 cut(s) 55, 631, 667
NlaIII CATG 1 cut(s) 309
NlaIV GGNNCC 4 cut(s) 16, 83, 539, 591
NruI TCGCGA 1 cut(s) 54
PfeI GAWTC 2 cut(s) 96, 596
PflMI CCANNNNNTGG 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 321
PsiI TTATAA 1 cut(s) 164
Psp124BI GAGCTC 1 cut(s) 295
Psp6I CCWGG 2 cut(s) 310, 807
PspGI CCWGG 2 cut(s) 310, 807
PspN4I GGNNCC 4 cut(s) 16, 83, 539, 591
PspPI GGNCC 2 cut(s) 179, 538
PstI CTGCAG 1 cut(s) 764
PstNI CAGNNNCTG 1 cut(s) 808
PsuI RGATCY 1 cut(s) 667
RruI TCGCGA 1 cut(s) 54
RsaI GTAC 2 cut(s) 33, 789
RsaNI GTAC 2 cut(s) 32, 788
SacI GAGCTC 1 cut(s) 295
SacII CCGCGG 1 cut(s) 373
SaqAI TTAA 4 cut(s) 321, 606, 621, 704
Sau3AI GATC 3 cut(s) 55, 631, 667
Sau96I GGNCC 2 cut(s) 179, 538
ScrFI CCNGG 2 cut(s) 312, 809
SduI GDGCHC 2 cut(s) 17, 295
SfcI CTRYAG 2 cut(s) 760, 855
Sfr303I CCGCGG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 373
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 551, 779
SmoI CTYRAG 2 cut(s) 551, 779
Sse9I AATT 5 cut(s) 166, 351, 462, 495, 617
SsiI CCGC 5 cut(s) 103, 189, 370, 372, 637
SspMI CTAG 3 cut(s) 231, 434, 848
SstI GAGCTC 1 cut(s) 295
StyD4I CCNGG 2 cut(s) 310, 807
TaaI ACNGT 4 cut(s) 48, 582, 740, 832
TaqI TCGA 1 cut(s) 630
TasI AATT 5 cut(s) 166, 351, 462, 495, 617
TfiI GAWTC 2 cut(s) 96, 596
Tru1I TTAA 4 cut(s) 321, 606, 621, 704
Tru9I TTAA 4 cut(s) 321, 606, 621, 704
TscAI CASTG 2 cut(s) 362, 769
TspDTI ATGAA 4 cut(s) 494, 667, 759, 855
TspRI CASTG 2 cut(s) 362, 769
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 179
VspI ATTAAT 1 cut(s) 321
XcmI CCANNNNNNNNNTGG 2 cut(s) 453, 647
XspI CTAG 3 cut(s) 231, 434, 848
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.