Rmu_sc0001470.1_g000004

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001470.1
OG0000139
Physical Location & Seq
Forward (+)
15639 .. 16135
497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001470.1_g000004.1.cds

Sequence Viewer

Length: 450 bp
atgggggacttattcaaatggagccgttcatctgtctatgcttttgatctggcaaatgaggagtttcgggaaatgccattacctgttcttagccacaatgaagatgacatgaaaatgacgcaagattttgatgagtgtagtgaattttgggcgatgaaagagtatggggtgcctgcatcttgggttaaactctttcgctttaatgtacgggatttaccagatgtgtttgcttcattctttagctgctattactgggatcctatttttattgcagaagacggtacagttgtgatcaaattgcataagaagaaggagttggtcaggattaaatgccataaagaagagaagccagtctgcaccgaacggtacggtcttgaggaagtgccgggatgtaagtgtttatttgatgccagtttgtatgatgaaactcttgtttcagtacctgaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

149

Amino Acids

17.52

Weight (kDa)

4.8

Isoelectric Point (pI)

56.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AclWI GGATC 2 cut(s) 251, 264
AcsI RAATTY 1 cut(s) 143
AfaI GTAC 4 cut(s) 207, 283, 368, 441
AgsI TTSAA 1 cut(s) 16
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
AlwI GGATC 2 cut(s) 251, 264
AlwNI CAGNNNCTG 1 cut(s) 443
ApeKI GCWGC 1 cut(s) 243
ApoI RAATTY 1 cut(s) 143
AsuC2I CCSGG 1 cut(s) 387
BaeI ACNNNNGTAYC 2 cut(s) 273, 306
BamHI GGATCC 1 cut(s) 256
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 230
BceAI ACGGC 1 cut(s) 9
BclI TGATCA 1 cut(s) 291
BcnI CCSGG 1 cut(s) 387
BisI GCNGC 1 cut(s) 244
BlsI GCNGC 1 cut(s) 245
Bme1390I CCNGG 1 cut(s) 387
BmiI GGNNCC 3 cut(s) 23, 171, 258
BmrFI CCNGG 1 cut(s) 387
BmrI ACTGGG 1 cut(s) 262
BmsI GCATC 2 cut(s) 185, 397
BmuI ACTGGG 1 cut(s) 262
BpiI GAAGAC 1 cut(s) 282
BpuEI CTTGAG 1 cut(s) 395
BpuMI CCSGG 1 cut(s) 387
Bse1I ACTGG 3 cut(s) 257, 350, 411
BseGI GGATG 1 cut(s) 395
BseNI ACTGG 3 cut(s) 257, 350, 411
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 340
BshNI GGYRCC 1 cut(s) 169
BsiSI CCGG 1 cut(s) 386
BslFI GGGAC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 20
Bsp143I GATC 3 cut(s) 46, 256, 291
BspLI GGNNCC 3 cut(s) 23, 171, 258
BspPI GGATC 2 cut(s) 251, 264
BspT107I GGYRCC 1 cut(s) 169
BsrI ACTGG 3 cut(s) 257, 350, 411
BssMI GATC 3 cut(s) 46, 256, 291
Bst4CI ACNGT 4 cut(s) 281, 286, 366, 371
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 1 cut(s) 89
BstF5I GGATG 1 cut(s) 395
BstKTI GATC 3 cut(s) 49, 259, 294
BstMBI GATC 3 cut(s) 46, 256, 291
BstSCI CCNGG 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 230
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BtgZI GCGATG 1 cut(s) 167
BtsCI GGATG 1 cut(s) 395
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 443
CseI GACGC 1 cut(s) 127
Csp6I GTAC 4 cut(s) 206, 282, 367, 440
CviAII CATG 1 cut(s) 109
CviJI RGCY 4 cut(s) 24, 93, 243, 349
CviKI_1 RGCY 4 cut(s) 24, 93, 243, 349
CviQI GTAC 4 cut(s) 206, 282, 367, 440
DdeI CTNAG 1 cut(s) 89
DpnI GATC 3 cut(s) 48, 258, 293
DpnII GATC 3 cut(s) 46, 256, 291
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
FaeI CATG 1 cut(s) 112
FaiI YATR 6 cut(s) 39, 110, 165, 303, 336, 420
FaqI GGGAC 1 cut(s) 20
FatI CATG 1 cut(s) 108
FbaI TGATCA 1 cut(s) 291
Fnu4HI GCNGC 1 cut(s) 244
FokI GGATG 1 cut(s) 402
Fsp4HI GCNGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 244
HapII CCGG 1 cut(s) 386
HgaI GACGC 1 cut(s) 127
Hin1II CATG 1 cut(s) 112
HpaII CCGG 1 cut(s) 386
Hpy188III TCNNGA 3 cut(s) 68, 322, 374
HpyAV CCTTC 1 cut(s) 304
HpyCH4III ACNGT 4 cut(s) 281, 286, 366, 371
HpyCH4V TGCA 4 cut(s) 176, 272, 301, 357
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 291
Kzo9I GATC 3 cut(s) 46, 256, 291
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 9 cut(s) 35, 96, 186, 231, 238, 307, 363, 399, 424
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 2 cut(s) 185, 397
MalI GATC 3 cut(s) 48, 258, 293
MboI GATC 3 cut(s) 46, 256, 291
MboII GAAGA 4 cut(s) 113, 287, 319, 353
MflI RGATCY 1 cut(s) 256
MluCI AATT 2 cut(s) 143, 296
MnlI CCTC 2 cut(s) 52, 370
MseI TTAA 3 cut(s) 186, 201, 327
MslI CAYNNNNRTG 1 cut(s) 113
MspI CCGG 1 cut(s) 386
MspR9I CCNGG 1 cut(s) 387
NciI CCSGG 1 cut(s) 387
NdeII GATC 3 cut(s) 46, 256, 291
NlaIII CATG 1 cut(s) 112
NlaIV GGNNCC 3 cut(s) 23, 171, 258
PkrI GCNGC 1 cut(s) 245
PspN4I GGNNCC 3 cut(s) 23, 171, 258
PstNI CAGNNNCTG 1 cut(s) 443
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 4 cut(s) 207, 283, 368, 441
RsaNI GTAC 4 cut(s) 206, 282, 367, 440
RseI CAYNNNNRTG 1 cut(s) 113
SaqAI TTAA 3 cut(s) 186, 201, 327
SatI GCNGC 1 cut(s) 244
Sau3AI GATC 3 cut(s) 46, 256, 291
ScrFI CCNGG 1 cut(s) 387
SetI ASST 3 cut(s) 85, 245, 445
SfaNI GCATC 2 cut(s) 185, 397
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 2 cut(s) 143, 296
StyD4I CCNGG 1 cut(s) 385
TaaI ACNGT 4 cut(s) 281, 286, 366, 371
TasI AATT 2 cut(s) 143, 296
Tru1I TTAA 3 cut(s) 186, 201, 327
Tru9I TTAA 3 cut(s) 186, 201, 327
TseI GCWGC 1 cut(s) 243
TspDTI ATGAA 6 cut(s) 18, 114, 125, 170, 222, 438
XapI RAATTY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.