FvH4_3g41771

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Forward (+)
35017054 .. 35018593
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g41771.t1

Sequence Viewer

Length: 792 bp
ATGTCGGAGGAGGGCTTCGAAATCCCAGAAGATCTTGTAGTGAGAATCCTGTGCCGGTTGTCGGTCAGAACATTGATCCGGTTCACTCGTGTGTCAAAACGGTGGCGTTTTATCATTATTTCTGATCCTCAGTTTGCCAAATCCCACCTCCAGATAGCATCAGGGCAGAGAAGCCTCACCCGAATGACCATGGTTACGGTGGTAGGTAACTCGTACATAACTCATTTGGTGCACTCGTCTATCTGGAACCCATCAACGGGATTTTTCCGCAGAATACCTAGTCCAAGGATGACGGAAAGCTTCGATGAACAGGGAGAAAGACGGTATCTAGAGTTTGTAATTTCGGGCTTTGGTTATGTATCGGCCACTGATGATTACAAGCCTGTTTTTGTTATCTCGGGGGACATGACTCATTCTCATATCTATATCCTCTCACTGAGGGCTAACTGCTGGAAAGGAACGGATGATGGGCATAGTAGCGAACTTTGGGGAATGACAGAGTATGATGTGCCTGAATATTGGGTTAAGCTCTTTGGATCTACAGTTGATGATTTACCAGACGTGTTTGCTTCATTAAACTATGGTTGGGGTGGTTGGGACCTGTGTTTTGTTACAGAAGGCGGTGCAGTTGTTATCAAGCTGTTTGATAGTAATGAGTTGGTCAGGATAGGATGCCGTAAAGAAGAGAAGCCGGTCTGCAACGGCCGATATTTGCTTGAAGACTTGCCTGGGTGTAGGCATTTTTATAACAGGACTTCATATGTTGAAACTTTAGTTTCAGTACCCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

264

Amino Acids

30.2

Weight (kDa)

5.84

Isoelectric Point (pI)

45.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 7 - 42 7e-08 F-box domain
F-box-like PF12937 8 - 42 9.6e-07 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 747
AciI CCGC 2 cut(s) 268, 621
AclWI GGATC 3 cut(s) 70, 119, 544
AcoI YGGCCR 2 cut(s) 363, 703
AfaI GTAC 2 cut(s) 215, 783
AfiI CCNNNNNNNGG 3 cut(s) 61, 256, 257
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 2 cut(s) 719, 767
AjiI CACGTC 1 cut(s) 562
AjnI CCWGG 1 cut(s) 727
AleI CACNNNNGTG 1 cut(s) 89
AluBI AGCT 3 cut(s) 300, 529, 640
AluI AGCT 3 cut(s) 300, 529, 640
Alw21I GWGCWC 1 cut(s) 234
Alw44I GTGCAC 1 cut(s) 230
AlwI GGATC 3 cut(s) 70, 119, 544
Ama87I CYCGRG 1 cut(s) 397
AoxI GGCC 2 cut(s) 363, 703
ApaLI GTGCAC 1 cut(s) 230
ArsI GACNNNNNNTTYG 2 cut(s) 590, 622
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 169
AsuII TTCGAA 1 cut(s) 18
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 598
BaeGI GKGCMC 1 cut(s) 234
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 726
Bbv12I GWGCWC 1 cut(s) 234
BccI CCATC 2 cut(s) 259, 461
BceAI ACGGC 2 cut(s) 660, 718
BciT130I CCWGG 1 cut(s) 729
BfaI CTAG 2 cut(s) 279, 329
BfmI CTRYAG 1 cut(s) 540
BglII AGATCT 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 729
Bme18I GGWCC 1 cut(s) 598
BmeT110I CYCGRG 1 cut(s) 397
BmgBI CACGTC 1 cut(s) 562
BmgT120I GGNCC 1 cut(s) 598
BmiI GGNNCC 2 cut(s) 248, 599
BmrFI CCNGG 1 cut(s) 729
BmsI GCATC 2 cut(s) 167, 662
BpiI GAAGAC 1 cut(s) 726
BpmI CTGGAG 1 cut(s) 134
Bpu14I TTCGAA 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 189, 284, 728
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 256, 257
Bse118I RCCGGY 2 cut(s) 54, 691
BseBI CCWGG 1 cut(s) 729
BseDI CCNNGG 3 cut(s) 189, 284, 728
BseGI GGATG 3 cut(s) 294, 469, 677
BseLI CCNNNNNNNGG 3 cut(s) 61, 256, 257
BseMII CTCAG 2 cut(s) 143, 428
BseRI GAGGAG 1 cut(s) 23
BseSI GKGCMC 1 cut(s) 234
BseX3I CGGCCG 1 cut(s) 703
BsgI GTGCAG 1 cut(s) 645
Bsh1285I CGRYCG 1 cut(s) 706
BshFI GGCC 2 cut(s) 365, 705
BsiEI CGRYCG 1 cut(s) 706
BsiHKAI GWGCWC 1 cut(s) 234
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 3 cut(s) 55, 79, 692
BslFI GGGAC 2 cut(s) 416, 611
BslI CCNNNNNNNGG 3 cut(s) 61, 256, 257
BsmFI GGGAC 2 cut(s) 416, 611
BsnI GGCC 2 cut(s) 365, 705
BsoBI CYCGRG 1 cut(s) 397
Bsp119I TTCGAA 1 cut(s) 18
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 4 cut(s) 31, 75, 124, 536
Bsp19I CCATGG 1 cut(s) 189
BspACI CCGC 2 cut(s) 268, 621
BspANI GGCC 2 cut(s) 365, 705
BspCNI CTCAG 2 cut(s) 142, 429
BspLI GGNNCC 2 cut(s) 248, 599
BspPI GGATC 3 cut(s) 70, 119, 544
BspT104I TTCGAA 1 cut(s) 18
BsrFI RCCGGY 2 cut(s) 54, 691
BssAI RCCGGY 2 cut(s) 54, 691
BssECI CCNNGG 3 cut(s) 189, 284, 728
BssMI GATC 4 cut(s) 31, 75, 124, 536
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 189, 284
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 729
Bst4CI ACNGT 4 cut(s) 102, 199, 324, 544
Bst6I CTCTTC 1 cut(s) 678
BstBI TTCGAA 1 cut(s) 18
BstDEI CTNAG 2 cut(s) 129, 437
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 3 cut(s) 294, 469, 677
BstKTI GATC 4 cut(s) 34, 78, 127, 539
BstMBI GATC 4 cut(s) 31, 75, 124, 536
BstMCI CGRYCG 1 cut(s) 706
BstNI CCWGG 1 cut(s) 729
BstSCI CCNGG 1 cut(s) 727
BstSFI CTRYAG 1 cut(s) 540
BstSLI GKGCMC 1 cut(s) 234
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 2 cut(s) 31, 536
BstYI RGATCY 2 cut(s) 31, 536
BstZI CGGCCG 1 cut(s) 703
BsuRI GGCC 2 cut(s) 365, 705
BtgI CCRYGG 1 cut(s) 189
BtrI CACGTC 1 cut(s) 562
BtsCI GGATG 3 cut(s) 294, 469, 677
BtsIMutI CAGTG 2 cut(s) 366, 434
Cfr10I RCCGGY 2 cut(s) 54, 691
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 214, 782
CviAII CATG 2 cut(s) 190, 406
CviQI GTAC 2 cut(s) 214, 782
DdeI CTNAG 2 cut(s) 129, 437
DpnI GATC 4 cut(s) 33, 77, 126, 538
DpnII GATC 4 cut(s) 31, 75, 124, 536
EaeI YGGCCR 2 cut(s) 363, 703
EagI CGGCCG 1 cut(s) 703
Eam1104I CTCTTC 1 cut(s) 678
EarI CTCTTC 1 cut(s) 678
EclXI CGGCCG 1 cut(s) 703
Eco130I CCWWGG 2 cut(s) 189, 284
Eco47I GGWCC 1 cut(s) 598
Eco52I CGGCCG 1 cut(s) 703
Eco88I CYCGRG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 189, 284
ErhI CCWWGG 2 cut(s) 189, 284
FaeI CATG 2 cut(s) 193, 409
FaqI GGGAC 2 cut(s) 416, 611
FatI CATG 2 cut(s) 189, 405
FauNDI CATATG 1 cut(s) 760
FokI GGATG 3 cut(s) 301, 476, 684
FspBI CTAG 2 cut(s) 279, 329
GsuI CTGGAG 1 cut(s) 134
HaeIII GGCC 2 cut(s) 365, 705
HapII CCGG 3 cut(s) 55, 79, 692
Hin1II CATG 2 cut(s) 193, 409
HindIII AAGCTT 1 cut(s) 298
HinfI GANTC 2 cut(s) 45, 409
HpaII CCGG 3 cut(s) 55, 79, 692
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 2 cut(s) 84, 232
Hpy188I TCNGA 3 cut(s) 7, 68, 124
Hpy188III TCNNGA 4 cut(s) 151, 244, 329, 664
Hpy8I GTNNAC 2 cut(s) 84, 232
HpyAV CCTTC 1 cut(s) 611
HpyCH4III ACNGT 4 cut(s) 102, 199, 324, 544
HpyCH4IV ACGT 1 cut(s) 561
HpyCH4V TGCA 3 cut(s) 232, 626, 699
HpyF3I CTNAG 2 cut(s) 129, 437
HpySE526I ACGT 1 cut(s) 561
Hsp92II CATG 2 cut(s) 193, 409
Kzo9I GATC 4 cut(s) 31, 75, 124, 536
LweI GCATC 2 cut(s) 167, 662
MaeI CTAG 2 cut(s) 279, 329
MaeII ACGT 1 cut(s) 561
MaeIII GTNAC 3 cut(s) 193, 206, 610
MalI GATC 4 cut(s) 33, 77, 126, 538
MboI GATC 4 cut(s) 31, 75, 124, 536
MboII GAAGA 3 cut(s) 41, 695, 731
MflI RGATCY 2 cut(s) 31, 536
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 1 cut(s) 339
MlyI GAGTC 1 cut(s) 403
MnlI CCTC 6 cut(s) 4, 138, 158, 185, 432, 440
MseI TTAA 2 cut(s) 525, 575
MslI CAYNNNNRTG 2 cut(s) 89, 182
MspI CCGG 3 cut(s) 55, 79, 692
MspR9I CCNGG 1 cut(s) 729
MvaI CCWGG 1 cut(s) 729
NcoI CCATGG 1 cut(s) 189
NdeI CATATG 1 cut(s) 760
NdeII GATC 4 cut(s) 31, 75, 124, 536
NlaIII CATG 2 cut(s) 193, 409
NlaIV GGNNCC 2 cut(s) 248, 599
NspV TTCGAA 1 cut(s) 18
OliI CACNNNNGTG 1 cut(s) 89
PfeI GAWTC 1 cut(s) 45
PleI GAGTC 1 cut(s) 403
PpsI GAGTC 1 cut(s) 403
PpuMI RGGWCCY 1 cut(s) 598
PsiI TTATAA 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 727
PspGI CCWGG 1 cut(s) 727
PspN4I GGNNCC 2 cut(s) 248, 599
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PsuI RGATCY 2 cut(s) 31, 536
RsaI GTAC 2 cut(s) 215, 783
RsaNI GTAC 2 cut(s) 214, 782
RseI CAYNNNNRTG 2 cut(s) 89, 182
SaqAI TTAA 2 cut(s) 525, 575
Sau3AI GATC 4 cut(s) 31, 75, 124, 536
Sau96I GGNCC 1 cut(s) 598
SchI GAGTC 1 cut(s) 403
ScrFI CCNGG 1 cut(s) 729
SduI GDGCHC 1 cut(s) 234
SetI ASST 8 cut(s) 150, 208, 280, 302, 531, 564, 603, 642
SfaNI GCATC 2 cut(s) 167, 662
SfcI CTRYAG 1 cut(s) 540
SfuI TTCGAA 1 cut(s) 18
SinI GGWCC 1 cut(s) 598
SmiMI CAYNNNNRTG 2 cut(s) 89, 182
Sse9I AATT 1 cut(s) 339
SsiI CCGC 2 cut(s) 268, 621
SspI AATATT 1 cut(s) 518
SspMI CTAG 2 cut(s) 279, 329
StyD4I CCNGG 1 cut(s) 727
StyI CCWWGG 2 cut(s) 189, 284
TaaI ACNGT 4 cut(s) 102, 199, 324, 544
TaiI ACGT 1 cut(s) 564
TaqI TCGA 2 cut(s) 18, 303
TaqII GACCGA 1 cut(s) 52
TasI AATT 1 cut(s) 339
TfiI GAWTC 1 cut(s) 45
Tru1I TTAA 2 cut(s) 525, 575
Tru9I TTAA 2 cut(s) 525, 575
TscAI CASTG 2 cut(s) 373, 441
TspDTI ATGAA 3 cut(s) 321, 561, 747
TspGWI ACGGA 2 cut(s) 308, 476
TspRI CASTG 2 cut(s) 373, 441
VneI GTGCAC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 598
XbaI TCTAGA 1 cut(s) 328
XcmI CCANNNNNNNNNTGG 1 cut(s) 196
XspI CTAG 2 cut(s) 279, 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.