Rh7CG387100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000139
Physical Location & Seq
Forward (+)
48934259 .. 48937800
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG387100.1

Sequence Viewer

Length: 399 bp
ATGCAGGACCTAAAATTCATTTCAGCACTCTTCCGAGTCTTGGAGGTCTTTCCCACCACAGCCGTCTCCATCTCGGTCTACCCGGCAATGTTGACGAAGGAGGAGGAGCTTGATAATGATGTCGACCTCCCTGAACATGAGTTTTGGGAAATGCCATTGCCTGTTCTTAGCCACAATGAAGATGACATGAAAATGACGCAAAAGACGACTCAGAGGCCTGAAAAACTAAGAAGCAAGAATGGAAATGAAGAGGGATTGCTACCTGCATTCTATGGCTGCAAGTTAAAGTGTGAGAGGAGACAAAAATTGAGGACGATTTGCCCGAAAAGTGAGCGGGCTCTTTACTTCTTCCATTTCATCCATCGCAGTCTGTTTGTTGATATGAGGGTACAACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.61

Weight (kDa)

6.43

Isoelectric Point (pI)

52.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 271
AccBSI CCGCTC 1 cut(s) 334
AccI GTMKAC 2 cut(s) 78, 123
AciI CCGC 1 cut(s) 334
AcsI RAATTY 1 cut(s) 14
AfaI GTAC 1 cut(s) 390
AfiI CCNNNNNNNGG 1 cut(s) 40
AluBI AGCT 1 cut(s) 109
AluI AGCT 1 cut(s) 109
Alw26I GTCTC 2 cut(s) 70, 292
AoxI GGCC 1 cut(s) 215
ApeKI GCWGC 1 cut(s) 276
ApoI RAATTY 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 7
AsuC2I CCSGG 1 cut(s) 83
AvaII GGWCC 1 cut(s) 7
BaeI ACNNNNGTAYC 1 cut(s) 380
BanII GRGCYC 1 cut(s) 340
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 77, 369
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 1 cut(s) 83
BcoDI GTCTC 2 cut(s) 70, 292
BfuAI ACCTGC 1 cut(s) 271
BisI GCNGC 1 cut(s) 277
BlsI GCNGC 1 cut(s) 278
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 7
BmgT120I GGNCC 1 cut(s) 7
BmrFI CCNGG 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse3DI GCAATG 2 cut(s) 93, 155
BseGI GGATG 1 cut(s) 357
BseLI CCNNNNNNNGG 1 cut(s) 40
BseMI GCAATG 2 cut(s) 93, 155
BseMII CTCAG 1 cut(s) 224
BseRI GAGGAG 3 cut(s) 116, 119, 310
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 1 cut(s) 40
BsmAI GTCTC 2 cut(s) 70, 292
BsmBI CGTCTC 1 cut(s) 70
BsmI GAATGC 1 cut(s) 266
BsnI GGCC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 340
BspACI CCGC 1 cut(s) 334
BspANI GGCC 1 cut(s) 217
BspCNI CTCAG 1 cut(s) 223
BspMI ACCTGC 1 cut(s) 271
BsrBI CCGCTC 1 cut(s) 334
BsrDI GCAATG 2 cut(s) 93, 155
Bst4CI ACNGT 1 cut(s) 396
Bst6I CTCTTC 2 cut(s) 35, 243
BstC8I GCNNGC 1 cut(s) 336
BstDEI CTNAG 3 cut(s) 167, 210, 227
BstF5I GGATG 1 cut(s) 357
BstMAI GTCTC 2 cut(s) 70, 292
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 1 cut(s) 263
BsuRI GGCC 1 cut(s) 217
BtgZI GCGATG 1 cut(s) 347
BtsCI GGATG 1 cut(s) 357
BveI ACCTGC 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 336
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 205
Csp6I GTAC 1 cut(s) 389
CviAII CATG 2 cut(s) 137, 187
CviJI RGCY 6 cut(s) 62, 109, 171, 217, 276, 338
CviKI_1 RGCY 6 cut(s) 62, 109, 171, 217, 276, 338
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 3 cut(s) 167, 210, 227
Eam1104I CTCTTC 2 cut(s) 35, 243
EarI CTCTTC 2 cut(s) 35, 243
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 7
EcoO109I RGGNCCY 1 cut(s) 7
EcoT38I GRGCYC 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 70
FaeI CATG 2 cut(s) 140, 190
FaiI YATR 4 cut(s) 138, 188, 273, 383
FatI CATG 2 cut(s) 136, 186
FauI CCCGC 1 cut(s) 327
FblI GTMKAC 2 cut(s) 78, 123
Fnu4HI GCNGC 1 cut(s) 277
FokI GGATG 1 cut(s) 344
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 277
GluI GCNGC 1 cut(s) 277
HaeIII GGCC 1 cut(s) 217
HapII CCGG 1 cut(s) 83
HgaI GACGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 140, 190
HincII GTYRAC 2 cut(s) 93, 124
HindII GTYRAC 2 cut(s) 93, 124
HinfI GANTC 2 cut(s) 36, 208
HpaII CCGG 1 cut(s) 83
Hpy166II GTNNAC 3 cut(s) 79, 93, 124
Hpy188I TCNGA 2 cut(s) 35, 213
Hpy8I GTNNAC 3 cut(s) 79, 93, 124
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 396
HpyCH4V TGCA 3 cut(s) 4, 266, 279
HpyF3I CTNAG 3 cut(s) 167, 210, 227
Hsp92II CATG 2 cut(s) 140, 190
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 5 cut(s) 96, 144, 174, 231, 276
Lsp1109I GCAGC 1 cut(s) 263
MbiI CCGCTC 1 cut(s) 334
MboII GAAGA 4 cut(s) 22, 191, 260, 340
MhlI GDGCHC 1 cut(s) 340
MluCI AATT 2 cut(s) 14, 305
MlyI GAGTC 2 cut(s) 45, 202
MnlI CCTC 9 cut(s) 37, 94, 97, 137, 207, 244, 288, 303, 378
MseI TTAA 1 cut(s) 284
MslI CAYNNNNRTG 1 cut(s) 191
MspI CCGG 1 cut(s) 83
MspR9I CCNGG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 266
NciI CCSGG 1 cut(s) 83
NlaIII CATG 2 cut(s) 140, 190
PceI AGGCCT 1 cut(s) 217
PcsI WCGNNNNNNNCGW 2 cut(s) 203, 320
PctI GAATGC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 278
PleI GAGTC 2 cut(s) 44, 202
PpsI GAGTC 2 cut(s) 44, 202
PpuMI RGGWCCY 1 cut(s) 7
Psp5II RGGWCCY 1 cut(s) 7
PspPI GGNCC 1 cut(s) 7
PspPPI RGGWCCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
RseI CAYNNNNRTG 1 cut(s) 191
SalI GTCGAC 1 cut(s) 122
SaqAI TTAA 1 cut(s) 284
SatI GCNGC 1 cut(s) 277
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 45, 202
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 1 cut(s) 340
SetI ASST 5 cut(s) 12, 48, 111, 129, 265
SinI GGWCC 1 cut(s) 7
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 2 cut(s) 14, 305
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 1 cut(s) 334
StuI AGGCCT 1 cut(s) 217
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 396
TaqI TCGA 1 cut(s) 123
TaqII GACCGA 1 cut(s) 64
TasI AATT 2 cut(s) 14, 305
Tru1I TTAA 1 cut(s) 284
Tru9I TTAA 1 cut(s) 284
TseI GCWGC 1 cut(s) 276
TspDTI ATGAA 5 cut(s) 7, 192, 203, 261, 346
VpaK11BI GGWCC 1 cut(s) 7
XapI RAATTY 1 cut(s) 14
XmiI GTMKAC 2 cut(s) 78, 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.