Rorug05G0444400

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Reverse (-)
61554541 .. 61556869
2329 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0444400.1

Sequence Viewer

Length: 528 bp
ATGTTGCGCCTAAAGGCGTGTCTAAATTTCTGTGGAAAGGAACTCACAGAAGATGATATGATCCAGAAGACTCTTTCCATTTTTCCTACTTCAGCACTTATACTAGCGAACCAGTATAGGCTGGAGTATGACAACAAAAGAATCACAACCTTCAATAAGCTTATCAACCAATTGGAAGTGGCTGAGAGGCATAATGAGGTTCTTTTGAACAACAATGTCAGGCCTGTTCGGACAAAGAAAATTCCCGAGGCTAATTATGGCAAAGTGAAAGGTGGAAAGAACCCCAATGCAAAGGGGGTTGGACGTGCTGATCCCTACCCACGTGGCAAGGGACGTGGGGGTCGTGGTATGGGTCGTGGAGGCCCTCCCAATGTGAAGAAGGCCAAGGAGGAGGATTTGGCCGTGAGTTTTGAAGAAGAAATGGAAACACGATCGTTAAGGAAGCTTAAGCGGAAAGCATCAGAGTGTGGAATACGCCGGCATTTTCCAGCGTGTGTGTTCGAGAAGTCTATTACCTATTACATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

175

Amino Acids

19.87

Weight (kDa)

9.85

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 339
AciI CCGC 1 cut(s) 451
AclWI GGATC 2 cut(s) 55, 305
AcoI YGGCCR 1 cut(s) 399
AcsI RAATTY 2 cut(s) 25, 240
AcuI CTGAAG 1 cut(s) 75
AcvI CACGTG 1 cut(s) 323
AflII CTTAAG 1 cut(s) 446
AflIII ACRYGT 1 cut(s) 522
AgsI TTSAA 3 cut(s) 154, 208, 413
AjiI CACGTC 2 cut(s) 305, 335
AluBI AGCT 2 cut(s) 160, 445
AluI AGCT 2 cut(s) 160, 445
AlwI GGATC 2 cut(s) 55, 305
Ama87I CYCGRG 1 cut(s) 245
AoxI GGCC 4 cut(s) 221, 361, 381, 399
ApoI RAATTY 2 cut(s) 25, 240
AspLEI GCGC 1 cut(s) 9
AspS9I GGNCC 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 245
BbrPI CACGTG 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 386
BfaI CTAG 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 446
BmeT110I CYCGRG 1 cut(s) 245
BmgBI CACGTC 2 cut(s) 305, 335
BmgT120I GGNCC 1 cut(s) 362
BmsI GCATC 1 cut(s) 467
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 143
BsaAI YACGTR 1 cut(s) 323
BsaJI CCNNGG 2 cut(s) 246, 384
Bse118I RCCGGY 1 cut(s) 477
Bse1I ACTGG 1 cut(s) 112
BseDI CCNNGG 2 cut(s) 246, 384
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 1 cut(s) 404
Bsh1285I CGRYCG 1 cut(s) 434
BshFI GGCC 4 cut(s) 223, 363, 383, 401
BsiEI CGRYCG 1 cut(s) 434
BsiHKCI CYCGRG 1 cut(s) 245
BsiSI CCGG 1 cut(s) 478
BslFI GGGAC 1 cut(s) 345
BsmFI GGGAC 1 cut(s) 345
BsnI GGCC 4 cut(s) 223, 363, 383, 401
BsoBI CYCGRG 1 cut(s) 245
Bsp143I GATC 3 cut(s) 60, 310, 431
BspACI CCGC 1 cut(s) 451
BspANI GGCC 4 cut(s) 223, 363, 383, 401
BspCNI CTCAG 1 cut(s) 175
BspPI GGATC 2 cut(s) 55, 305
BspTI CTTAAG 1 cut(s) 446
BsrFI RCCGGY 1 cut(s) 477
BsrI ACTGG 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 477
BssECI CCNNGG 2 cut(s) 246, 384
BssMI GATC 3 cut(s) 60, 310, 431
BssT1I CCWWGG 1 cut(s) 384
BstAFI CTTAAG 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 323
BstC8I GCNNGC 1 cut(s) 479
BstDEI CTNAG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 9
BstKTI GATC 3 cut(s) 63, 313, 434
BstMBI GATC 3 cut(s) 60, 310, 431
BstMCI CGRYCG 1 cut(s) 434
BstNSI RCATGY 1 cut(s) 526
BstV2I GAAGAC 1 cut(s) 74
BsuRI GGCC 4 cut(s) 223, 363, 383, 401
BtrI CACGTC 2 cut(s) 305, 335
Cac8I GCNNGC 1 cut(s) 479
CfoI GCGC 1 cut(s) 9
Cfr10I RCCGGY 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 1 cut(s) 523
CviJI RGCY 9 cut(s) 121, 160, 182, 223, 251, 363, 383, 401, 445
CviKI_1 RGCY 9 cut(s) 121, 160, 182, 223, 251, 363, 383, 401, 445
DdeI CTNAG 1 cut(s) 183
DpnI GATC 3 cut(s) 62, 312, 433
DpnII GATC 3 cut(s) 60, 310, 431
DrdI GACNNNNNNGTC 1 cut(s) 339
DseDI GACNNNNNNGTC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 399
Eco130I CCWWGG 1 cut(s) 384
Eco147I AGGCCT 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 75
Eco72I CACGTG 1 cut(s) 323
Eco88I CYCGRG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 362
EcoT14I CCWWGG 1 cut(s) 384
ErhI CCWWGG 1 cut(s) 384
FaeI CATG 1 cut(s) 526
FaiI YATR 8 cut(s) 59, 101, 117, 129, 192, 258, 350, 524
FaqI GGGAC 1 cut(s) 345
FatI CATG 1 cut(s) 522
FspBI CTAG 1 cut(s) 104
GlaI GCGC 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 4 cut(s) 223, 363, 383, 401
HapII CCGG 1 cut(s) 478
HhaI GCGC 1 cut(s) 9
Hin1II CATG 1 cut(s) 526
Hin6I GCGC 1 cut(s) 7
HinP1I GCGC 1 cut(s) 7
HindIII AAGCTT 2 cut(s) 158, 443
HinfI GANTC 2 cut(s) 70, 141
HpaII CCGG 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 231, 463
Hpy188III TCNNGA 3 cut(s) 64, 245, 502
HpyAV CCTTC 2 cut(s) 160, 373
HpyCH4IV ACGT 3 cut(s) 304, 322, 334
HpyCH4V TGCA 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 183
HpySE526I ACGT 3 cut(s) 304, 322, 334
Hsp92II CATG 1 cut(s) 526
HspAI GCGC 1 cut(s) 7
KroI GCCGGC 1 cut(s) 477
KroNI GCCGGC 1 cut(s) 479
Kzo9I GATC 3 cut(s) 60, 310, 431
LpnPI CCDG 7 cut(s) 77, 107, 125, 205, 237, 491, 501
LweI GCATC 1 cut(s) 467
MaeI CTAG 1 cut(s) 104
MaeII ACGT 3 cut(s) 304, 322, 334
MalI GATC 3 cut(s) 62, 312, 433
MboI GATC 3 cut(s) 60, 310, 431
MboII GAAGA 5 cut(s) 62, 79, 388, 425, 428
MfeI CAATTG 1 cut(s) 170
MluCI AATT 4 cut(s) 25, 170, 240, 253
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 7 cut(s) 180, 190, 241, 353, 375, 382, 385
MroNI GCCGGC 1 cut(s) 477
MseI TTAA 2 cut(s) 437, 447
MslI CAYNNNNRTG 1 cut(s) 463
MspCI CTTAAG 1 cut(s) 446
MspI CCGG 1 cut(s) 478
MunI CAATTG 1 cut(s) 170
NaeI GCCGGC 1 cut(s) 479
NdeII GATC 3 cut(s) 60, 310, 431
NgoMIV GCCGGC 1 cut(s) 477
NlaIII CATG 1 cut(s) 526
NspI RCATGY 1 cut(s) 526
PceI AGGCCT 1 cut(s) 223
PciI ACATGT 1 cut(s) 522
PcsI WCGNNNNNNNCGW 1 cut(s) 340
PdiI GCCGGC 1 cut(s) 479
PfeI GAWTC 1 cut(s) 141
Ple19I CGATCG 1 cut(s) 434
PleI GAGTC 1 cut(s) 64
PmaCI CACGTG 1 cut(s) 323
PmlI CACGTG 1 cut(s) 323
PpsI GAGTC 1 cut(s) 64
Ppu21I YACGTR 1 cut(s) 323
PscI ACATGT 1 cut(s) 522
PspCI CACGTG 1 cut(s) 323
PspPI GGNCC 1 cut(s) 362
PvuI CGATCG 1 cut(s) 434
RseI CAYNNNNRTG 1 cut(s) 463
SaqAI TTAA 2 cut(s) 437, 447
Sau3AI GATC 3 cut(s) 60, 310, 431
Sau96I GGNCC 1 cut(s) 362
SchI GAGTC 1 cut(s) 64
SetI ASST 9 cut(s) 152, 162, 201, 274, 307, 325, 337, 447, 518
SfaNI GCATC 1 cut(s) 467
SmiMI CAYNNNNRTG 1 cut(s) 463
SmlI CTYRAG 1 cut(s) 446
SmoI CTYRAG 1 cut(s) 446
Sse9I AATT 4 cut(s) 25, 170, 240, 253
SseBI AGGCCT 1 cut(s) 223
SsiI CCGC 1 cut(s) 451
SspMI CTAG 1 cut(s) 104
StuI AGGCCT 1 cut(s) 223
StyI CCWWGG 1 cut(s) 384
TaiI ACGT 3 cut(s) 307, 325, 337
TaqI TCGA 1 cut(s) 501
TasI AATT 4 cut(s) 25, 170, 240, 253
TfiI GAWTC 1 cut(s) 141
Tru1I TTAA 2 cut(s) 437, 447
Tru9I TTAA 2 cut(s) 437, 447
Vha464I CTTAAG 1 cut(s) 446
XapI RAATTY 2 cut(s) 25, 240
XceI RCATGY 1 cut(s) 526
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.