Rroxscaffold_1G00005700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000139
Physical Location & Seq
Forward (+)
7737907 .. 7738698
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005700.1

Sequence Viewer

Length: 792 bp
ATGAACCCATCGACTGGATTCTTCCGCAAGATACCTAGTCCAAGTTTCCAGGTGAAGTCAATACAATCAACCCATGAAGAGTACCTGTACTTTGTAAATTATGGTTTTGGTCATGAGTTGGCCAGTGATGACTACAAACTTGTTTTCATATTATGTGCCCTCGGTCATCTGGTGGAAGTCCATATCTTCTCTCTGAGAGCCAACATTTGGAAAGCTATTACAGCTCCTCACTTGTCAAGGGCGGGCTGGGACAGTGGACGGGGGACTTTTTCAAATGGAGCAATTCACAGGGTCATTCACTGCAGAAGTGAGAGTTCTGACCCAGTTATCTATGCGTTTGACTTGGCAGAGGAGGAGTTCCGGCAAGTGCCATTACCGCCTGTTTTGTGGCAAAATGATGAACACAGGAATCCGACCCAGATAACTACTTTGGTTCATTTAGGAGGATACCTTTGCATATGGTCTCGGAAGCTCTTTCATTCCGGGAAAGGTGAAGTTTGGGCGATGACAGAGTATGGGGTGCCTGAATCTTGGGTTAAACTCTTTAATTTTAGACTACGAGATTTACCAGATATCTTTGCTTCACTATACAGTACATGGGATCTGTGTTTCATTACAGAAAGCGGTACAATGGTGATTAGACGGCGTAAGGAGTTGTATGGTTTGAATGCCATAACGAAGAGAATCCGATCTGCAGCCGACGGTATAGGCTTGAGGAGGTACACCCTGAGGTGCCCGGGTGTTCATTTCATTTTCATGCAACCGCATATGATGAAACGTTACTTTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

263

Amino Acids

30.45

Weight (kDa)

9.08

Isoelectric Point (pI)

47.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 1 - 181 3.6e-10 F-box associated beta propeller domain
FBA_1 PF07734 17 - 213 2.5e-10 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 520, 732
AccB7I CCANNNNNTGG 2 cut(s) 14, 207
AciI CCGC 5 cut(s) 25, 242, 377, 624, 764
AclI AACGTT 1 cut(s) 778
AclWI GGATC 1 cut(s) 609
AcoI YGGCCR 1 cut(s) 120
AfaI GTAC 5 cut(s) 83, 89, 595, 628, 722
AfiI CCNNNNNNNGG 2 cut(s) 14, 207
AgsI TTSAA 2 cut(s) 273, 667
AjnI CCWGG 1 cut(s) 48
AluBI AGCT 3 cut(s) 215, 224, 472
AluI AGCT 3 cut(s) 215, 224, 472
Alw26I GTCTC 1 cut(s) 468
AlwI GGATC 1 cut(s) 609
Ama87I CYCGRG 1 cut(s) 736
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 1 cut(s) 695
AsuC2I CCSGG 3 cut(s) 484, 737, 738
AsuHPI GGTGA 3 cut(s) 64, 503, 646
AvaI CYCGRG 1 cut(s) 736
AxyI CCTNAGG 1 cut(s) 728
BaeGI GKGCMC 2 cut(s) 160, 737
BaeI ACNNNNGTAYC 2 cut(s) 618, 651
BalI TGGCCA 1 cut(s) 122
BanI GGYRCC 2 cut(s) 520, 732
BbvI GCAGC 1 cut(s) 707
BccI CCATC 1 cut(s) 16
BceAI ACGGC 1 cut(s) 659
BciT130I CCWGG 1 cut(s) 50
BciVI GTATCC 1 cut(s) 440
BcnI CCSGG 3 cut(s) 484, 737, 738
BcoDI GTCTC 1 cut(s) 468
BfaI CTAG 1 cut(s) 36
BfmI CTRYAG 3 cut(s) 301, 693, 788
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 1 cut(s) 696
BlsI GCNGC 1 cut(s) 697
Bme1390I CCNGG 4 cut(s) 50, 484, 737, 738
BmeT110I CYCGRG 1 cut(s) 736
BmiI GGNNCC 2 cut(s) 522, 734
BmrFI CCNGG 4 cut(s) 50, 484, 737, 738
BmrI ACTGGG 1 cut(s) 317
BmuI ACTGGG 1 cut(s) 317
BpuEI CTTGAG 1 cut(s) 733
BpuMI CCSGG 3 cut(s) 484, 737, 738
BsaI GGTCTC 1 cut(s) 468
BsaJI CCNNGG 2 cut(s) 160, 736
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 207
Bse1I ACTGG 3 cut(s) 19, 123, 323
Bse21I CCTNAGG 1 cut(s) 728
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 160, 736
BseLI CCNNNNNNNGG 2 cut(s) 14, 207
BseMII CTCAG 2 cut(s) 185, 719
BseNI ACTGG 3 cut(s) 19, 123, 323
BseRI GAGGAG 4 cut(s) 216, 365, 368, 730
BseSI GKGCMC 2 cut(s) 160, 737
BseXI GCAGC 1 cut(s) 707
BseYI CCCAGC 1 cut(s) 246
BshFI GGCC 1 cut(s) 122
BshNI GGYRCC 2 cut(s) 520, 732
BsiHKCI CYCGRG 1 cut(s) 736
BsiSI CCGG 3 cut(s) 361, 483, 737
BslFI GGGAC 2 cut(s) 263, 277
BslI CCNNNNNNNGG 2 cut(s) 14, 207
BsmAI GTCTC 1 cut(s) 468
BsmFI GGGAC 2 cut(s) 263, 277
BsmI GAATGC 1 cut(s) 673
BsnI GGCC 1 cut(s) 122
Bso31I GGTCTC 1 cut(s) 468
BsoBI CYCGRG 1 cut(s) 736
Bsp1286I GDGCHC 2 cut(s) 160, 737
Bsp143I GATC 2 cut(s) 601, 689
BspACI CCGC 5 cut(s) 25, 242, 377, 624, 764
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 2 cut(s) 186, 720
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 522, 734
BspMAI CTGCAG 2 cut(s) 305, 697
BspPI GGATC 1 cut(s) 609
BspT107I GGYRCC 2 cut(s) 520, 732
BspTNI GGTCTC 1 cut(s) 468
BsrI ACTGG 3 cut(s) 19, 123, 323
BssECI CCNNGG 2 cut(s) 160, 736
BssMI GATC 2 cut(s) 601, 689
Bst2UI CCWGG 1 cut(s) 50
Bst4CI ACNGT 3 cut(s) 254, 593, 704
Bst6I CTCTTC 2 cut(s) 72, 674
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 194, 728
BstKTI GATC 2 cut(s) 604, 692
BstMAI GTCTC 1 cut(s) 468
BstMBI GATC 2 cut(s) 601, 689
BstMWI GCNNNNNNNGC 2 cut(s) 221, 376
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 4 cut(s) 48, 482, 735, 736
BstSFI CTRYAG 3 cut(s) 301, 693, 788
BstSLI GKGCMC 2 cut(s) 160, 737
BstV1I GCAGC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
Bsu36I CCTNAGG 1 cut(s) 728
BsuI GTATCC 1 cut(s) 440
BsuRI GGCC 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 518
BtsI GCAGTG 1 cut(s) 298
BtsIMutI CAGTG 3 cut(s) 130, 259, 298
Cac8I GCNNGC 1 cut(s) 244
CciI TCATGA 1 cut(s) 112
Cfr9I CCCGGG 1 cut(s) 736
Csp6I GTAC 5 cut(s) 82, 88, 594, 627, 721
CviAII CATG 4 cut(s) 74, 113, 597, 757
CviJI RGCY 8 cut(s) 122, 200, 215, 224, 246, 472, 698, 711
CviKI_1 RGCY 8 cut(s) 122, 200, 215, 224, 246, 472, 698, 711
CviQI GTAC 5 cut(s) 82, 88, 594, 627, 721
DdeI CTNAG 2 cut(s) 194, 728
DpnI GATC 2 cut(s) 603, 691
DpnII GATC 2 cut(s) 601, 689
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 72, 674
EarI CTCTTC 2 cut(s) 72, 674
Eco31I GGTCTC 1 cut(s) 468
Eco32I GATATC 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 728
Eco88I CYCGRG 1 cut(s) 736
EcoRII CCWGG 1 cut(s) 48
EcoRV GATATC 1 cut(s) 574
FaeI CATG 4 cut(s) 77, 116, 600, 760
FaqI GGGAC 2 cut(s) 263, 277
FatI CATG 4 cut(s) 73, 112, 596, 756
FauI CCCGC 1 cut(s) 235
FauNDI CATATG 2 cut(s) 458, 768
Fnu4HI GCNGC 1 cut(s) 696
Fsp4HI GCNGC 1 cut(s) 696
FspBI CTAG 1 cut(s) 36
GluI GCNGC 1 cut(s) 696
GsaI CCCAGC 1 cut(s) 250
HaeIII GGCC 1 cut(s) 122
HapII CCGG 3 cut(s) 361, 483, 737
Hin1II CATG 4 cut(s) 77, 116, 600, 760
HinfI GANTC 4 cut(s) 18, 409, 527, 684
HpaII CCGG 3 cut(s) 361, 483, 737
HphI GGTGA 3 cut(s) 64, 503, 646
Hpy166II GTNNAC 2 cut(s) 257, 723
Hpy188I TCNGA 5 cut(s) 195, 319, 414, 468, 689
Hpy188III TCNNGA 1 cut(s) 113
Hpy8I GTNNAC 2 cut(s) 257, 723
Hpy99I CGWCG 1 cut(s) 704
HpyCH4III ACNGT 3 cut(s) 254, 593, 704
HpyCH4IV ACGT 1 cut(s) 778
HpyCH4V TGCA 4 cut(s) 303, 456, 695, 760
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 376
HpyF3I CTNAG 2 cut(s) 194, 728
HpySE526I ACGT 1 cut(s) 778
Hsp92II CATG 4 cut(s) 77, 116, 600, 760
Kzo9I GATC 2 cut(s) 601, 689
LmnI GCTCC 2 cut(s) 229, 278
Lsp1109I GCAGC 1 cut(s) 707
MaeI CTAG 1 cut(s) 36
MaeII ACGT 1 cut(s) 778
MaeIII GTNAC 1 cut(s) 779
MalI GATC 2 cut(s) 603, 691
MboI GATC 2 cut(s) 601, 689
MboII GAAGA 4 cut(s) 13, 89, 178, 691
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 2 cut(s) 160, 737
MlsI TGGCCA 1 cut(s) 122
MluCI AATT 3 cut(s) 97, 282, 547
MluNI TGGCCA 1 cut(s) 122
MmeI TCCRAC 1 cut(s) 437
MnlI CCTC 8 cut(s) 170, 237, 343, 346, 437, 708, 711, 723
Mox20I TGGCCA 1 cut(s) 122
MscI TGGCCA 1 cut(s) 122
MseI TTAA 2 cut(s) 537, 546
MslI CAYNNNNRTG 1 cut(s) 755
Msp20I TGGCCA 1 cut(s) 122
MspI CCGG 3 cut(s) 361, 483, 737
MspR9I CCNGG 4 cut(s) 50, 484, 737, 738
Mva1269I GAATGC 1 cut(s) 673
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 2 cut(s) 221, 376
NciI CCSGG 3 cut(s) 484, 737, 738
NdeI CATATG 2 cut(s) 458, 768
NdeII GATC 2 cut(s) 601, 689
NlaIII CATG 4 cut(s) 77, 116, 600, 760
NlaIV GGNNCC 2 cut(s) 522, 734
PagI TCATGA 1 cut(s) 112
PctI GAATGC 1 cut(s) 673
PfeI GAWTC 4 cut(s) 18, 409, 527, 684
PflMI CCANNNNNTGG 2 cut(s) 14, 207
PfoI TCCNGGA 1 cut(s) 482
PkrI GCNGC 1 cut(s) 697
Psp1406I AACGTT 1 cut(s) 778
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 246
PspGI CCWGG 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 522, 734
PstI CTGCAG 2 cut(s) 305, 697
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 5 cut(s) 83, 89, 595, 628, 722
RsaNI GTAC 5 cut(s) 82, 88, 594, 627, 721
RseI CAYNNNNRTG 1 cut(s) 755
SaqAI TTAA 2 cut(s) 537, 546
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 2 cut(s) 601, 689
ScrFI CCNGG 4 cut(s) 50, 484, 737, 738
SduI GDGCHC 2 cut(s) 160, 737
SfcI CTRYAG 3 cut(s) 301, 693, 788
SmaI CCCGGG 1 cut(s) 738
SmiMI CAYNNNNRTG 1 cut(s) 755
SmlI CTYRAG 1 cut(s) 712
SmoI CTYRAG 1 cut(s) 712
Sse9I AATT 3 cut(s) 97, 282, 547
SsiI CCGC 5 cut(s) 25, 242, 377, 624, 764
SspMI CTAG 1 cut(s) 36
StyD4I CCNGG 4 cut(s) 48, 482, 735, 736
TaaI ACNGT 3 cut(s) 254, 593, 704
TaiI ACGT 1 cut(s) 781
TaqI TCGA 1 cut(s) 11
TaqII GACCGA 1 cut(s) 152
TasI AATT 3 cut(s) 97, 282, 547
TatI WGTACW 2 cut(s) 87, 593
TfiI GAWTC 4 cut(s) 18, 409, 527, 684
Tru1I TTAA 2 cut(s) 537, 546
Tru9I TTAA 2 cut(s) 537, 546
TscAI CASTG 3 cut(s) 130, 259, 305
TseI GCWGC 1 cut(s) 695
TspMI CCCGGG 1 cut(s) 736
TspRI CASTG 3 cut(s) 130, 259, 305
Van91I CCANNNNNTGG 2 cut(s) 14, 207
XmaI CCCGGG 1 cut(s) 736
XspI CTAG 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.