Rmu_sc0031697.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031697.1
OG0000139
Physical Location & Seq
Forward (+)
1 .. 453
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031697.1_g000001.1.cds

Sequence Viewer

Length: 453 bp
agtgatgtttcttgctggccattcctcagctacacaacgagtagcgactgtggaactctttcaaatgaagcgatccattgggctaaccactacagacaataccctgactatcaagaagactacaatgaagcaatctgtgcttttgatttggaaagtgaggagttacgtaaagttcctgttccttattttaacctaggagattatgataatcgtgatccagtttttgatagaagaatgatgactgttgttcatttaggaggatgcctttgcgcttttcttgagatttgtcatggttgtggtaaggatattgaattgtggatgatgagagattacgggatgtccaattcatggatagaactattcaaatttagaatggttgagagttaccggatccgcttagaacgcattttggttgggatccaagtttggttaccgaaagtggttcaattgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

150

Amino Acids

17.71

Weight (kDa)

4.9

Isoelectric Point (pI)

52.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 348
AciI CCGC 1 cut(s) 394
AclWI GGATC 6 cut(s) 67, 209, 385, 398, 412, 425
AcoI YGGCCR 1 cut(s) 17
AcsI RAATTY 1 cut(s) 365
AfiI CCNNNNNNNGG 1 cut(s) 348
AgsI TTSAA 4 cut(s) 63, 311, 364, 446
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
AlwI GGATC 6 cut(s) 67, 209, 385, 398, 412, 425
AoxI GGCC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 365
Asp700I GAANNNNTTC 1 cut(s) 58
AspA2I CCTAGG 1 cut(s) 193
AspLEI GCGC 1 cut(s) 272
AvrII CCTAGG 1 cut(s) 193
BalI TGGCCA 1 cut(s) 19
BamHI GGATCC 2 cut(s) 390, 417
BbsI GAAGAC 1 cut(s) 123
BbvCI CCTCAGC 1 cut(s) 26
BfaI CTAG 1 cut(s) 194
BfmI CTRYAG 1 cut(s) 91
BlnI CCTAGG 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 392, 419
BmsI GCATC 1 cut(s) 251
BpiI GAAGAC 1 cut(s) 123
Bpu10I CCTNAGC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 299
BsaAI YACGTR 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 193
BsaWI WCCGGW 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 348
Bse1I ACTGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 193
BseGI GGATG 3 cut(s) 266, 324, 342
BseLI CCNNNNNNNGG 1 cut(s) 348
BseMII CTCAG 1 cut(s) 40
BseNI ACTGG 1 cut(s) 218
BseRI GAGGAG 1 cut(s) 173
BshFI GGCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 388
BslI CCNNNNNNNGG 1 cut(s) 348
BsnI GGCC 1 cut(s) 19
Bsp143I GATC 4 cut(s) 72, 214, 390, 417
BspACI CCGC 1 cut(s) 394
BspANI GGCC 1 cut(s) 19
BspCNI CTCAG 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 392, 419
BspPI GGATC 6 cut(s) 67, 209, 385, 398, 412, 425
BsrI ACTGG 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 193
BssMI GATC 4 cut(s) 72, 214, 390, 417
BssT1I CCWWGG 1 cut(s) 193
Bst4CI ACNGT 2 cut(s) 50, 244
BstAPI GCANNNNNTGC 1 cut(s) 137
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 17
BstDEI CTNAG 2 cut(s) 26, 397
BstEII GGTNACC 1 cut(s) 429
BstF5I GGATG 3 cut(s) 266, 324, 342
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 4 cut(s) 75, 217, 393, 420
BstMBI GATC 4 cut(s) 72, 214, 390, 417
BstMWI GCNNNNNNNGC 2 cut(s) 137, 402
BstPI GGTNACC 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 91
BstSNI TACGTA 1 cut(s) 167
BstV2I GAAGAC 1 cut(s) 123
BstX2I RGATCY 2 cut(s) 390, 417
BstYI RGATCY 2 cut(s) 390, 417
BsuRI GGCC 1 cut(s) 19
BtsCI GGATG 3 cut(s) 266, 324, 342
Cac8I GCNNGC 1 cut(s) 17
CfoI GCGC 1 cut(s) 272
CviAII CATG 2 cut(s) 290, 348
CviJI RGCY 3 cut(s) 19, 30, 83
CviKI_1 RGCY 3 cut(s) 19, 30, 83
DdeI CTNAG 2 cut(s) 26, 397
DpnI GATC 4 cut(s) 74, 216, 392, 419
DpnII GATC 4 cut(s) 72, 214, 390, 417
EaeI YGGCCR 1 cut(s) 17
Eco105I TACGTA 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 193
Eco91I GGTNACC 1 cut(s) 429
EcoO65I GGTNACC 1 cut(s) 429
EcoT14I CCWWGG 1 cut(s) 193
ErhI CCWWGG 1 cut(s) 193
FaeI CATG 2 cut(s) 293, 351
FaiI YATR 3 cut(s) 204, 291, 349
FatI CATG 2 cut(s) 289, 347
FokI GGATG 3 cut(s) 273, 331, 349
FspBI CTAG 1 cut(s) 194
GlaI GCGC 1 cut(s) 271
HaeIII GGCC 1 cut(s) 19
HapII CCGG 1 cut(s) 388
HhaI GCGC 1 cut(s) 272
Hin1II CATG 2 cut(s) 293, 351
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HpaII CCGG 1 cut(s) 388
Hpy188III TCNNGA 3 cut(s) 113, 212, 278
HpyCH4III ACNGT 2 cut(s) 50, 244
HpyCH4IV ACGT 1 cut(s) 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 402
HpyF3I CTNAG 2 cut(s) 26, 397
HpySE526I ACGT 1 cut(s) 166
Hsp92II CATG 2 cut(s) 293, 351
HspAI GCGC 1 cut(s) 270
Kzo9I GATC 4 cut(s) 72, 214, 390, 417
LpnPI CCDG 4 cut(s) 117, 189, 231, 401
LweI GCATC 1 cut(s) 251
MaeI CTAG 1 cut(s) 194
MaeII ACGT 1 cut(s) 166
MaeIII GTNAC 3 cut(s) 162, 383, 429
MalI GATC 4 cut(s) 74, 216, 392, 419
MboI GATC 4 cut(s) 72, 214, 390, 417
MboII GAAGA 2 cut(s) 128, 243
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 2 cut(s) 390, 417
MlsI TGGCCA 1 cut(s) 19
MluCI AATT 4 cut(s) 311, 343, 365, 446
MluNI TGGCCA 1 cut(s) 19
MnlI CCTC 3 cut(s) 35, 151, 251
Mox20I TGGCCA 1 cut(s) 19
MroXI GAANNNNTTC 1 cut(s) 58
MscI TGGCCA 1 cut(s) 19
MseI TTAA 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 294
Msp20I TGGCCA 1 cut(s) 19
MspI CCGG 1 cut(s) 388
MunI CAATTG 1 cut(s) 446
MwoI GCNNNNNNNGC 2 cut(s) 137, 402
NdeII GATC 4 cut(s) 72, 214, 390, 417
NlaIII CATG 2 cut(s) 293, 351
NlaIV GGNNCC 2 cut(s) 392, 419
PdmI GAANNNNTTC 1 cut(s) 58
PflMI CCANNNNNTGG 1 cut(s) 348
Ppu21I YACGTR 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 429
PspN4I GGNNCC 2 cut(s) 392, 419
PsuI RGATCY 2 cut(s) 390, 417
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 189
Sau3AI GATC 4 cut(s) 72, 214, 390, 417
SetI ASST 3 cut(s) 32, 169, 195
SfaNI GCATC 1 cut(s) 251
SfcI CTRYAG 1 cut(s) 91
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SnaBI TACGTA 1 cut(s) 167
Sse9I AATT 4 cut(s) 311, 343, 365, 446
SsiI CCGC 1 cut(s) 394
SspMI CTAG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 193
TaaI ACNGT 2 cut(s) 50, 244
TaiI ACGT 1 cut(s) 169
TasI AATT 4 cut(s) 311, 343, 365, 446
Tru1I TTAA 1 cut(s) 189
Tru9I TTAA 1 cut(s) 189
TspDTI ATGAA 4 cut(s) 81, 141, 239, 336
Van91I CCANNNNNTGG 1 cut(s) 348
XapI RAATTY 1 cut(s) 365
XmaJI CCTAGG 1 cut(s) 193
XmnI GAANNNNTTC 1 cut(s) 58
XspI CTAG 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.