Rorug01G0419100

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000139
Physical Location & Seq
Forward (+)
52107115 .. 52110339
3225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0419100.1

Sequence Viewer

Length: 867 bp
ATGCTGCCGAGGTGGAGCAGAGCTCTCACTCAGCTCTCGCGGCTGGGCTCGCAGCGTGGCCTGAACCACGGAAACGATTTCTATGCTATTTCGCGCCAAAGCTACGCCAAGGCAGCTGTGGCTCCTGTTATGGCTGATACTCTGGAAAAAGGCCTCCCCACCGAGCCAGTGGTGAATTTGGACAAGCTGTTTTGGTCTAAGCCGTGCTCATTGGCTTTGCCTCCGGAGTCGCCGTTGAGGATTGATGAGCCGGAGTATGAGGGCATTAAGCGTGTGTTTCTTAAGCTCATGCTGTTTTATAGCAAGCAAAGCAAGTCTATTCGAGGGGCGAATGTGGTGTATAAGAGAGTCATTTCTCAAGTTGATAAACCGGCCATATACGAAGTGTTCAACTTGGAGAAAACTTTTAAGACAACATATGCTTTGCTTGTACTTCATATGTGGCTTTGCTTACGCCGGTTGAAACAAGAGGGAAAAGAAGGTGTTGAGTTTGGGCAATATGTGTATGAGATTTACAACCATGATGTGGAACTTAGAGTCTCTAAGGCTGGGGTCAACTTGCTACTGAGTAAATGGATGAAGGATTTGGAGAAGATATTCTATGGAAATATTGTTGCTTATGATGCTGCTGTGCTTCCAGAGGCAAGGCTGGATGATCTGCCAAATGTCATATGGAGGAATGTCTTTTCTGATGATGGTTCATCAAAGCCAGATGAGGCTGCATCACGAACTGTCCAGGCAATGGCAAGATATGTTCGCCGGGAAGTTAGTTGCCTGTCCTTAACAGATAAAGAAGCTATGTTTTCCGGCAATTTCATGTTTACTCCACTAAAAATCGAGAAAGCAAAATTGGAGGGGTCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

288

Amino Acids

32.92

Weight (kDa)

9.22

Isoelectric Point (pI)

46.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ubiq_cyt_C_chap PF03981 129 - 273 8.4e-36 Ubiquinol-cytochrome C chaperone
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 526, 742
AccII CGCG 2 cut(s) 40, 94
AccIII TCCGGA 1 cut(s) 223
AciI CCGC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 1 cut(s) 175
AfaI GTAC 1 cut(s) 432
AfiI CCNNNNNNNGG 2 cut(s) 526, 742
AflII CTTAAG 1 cut(s) 281
AgsI TTSAA 2 cut(s) 391, 463
AjnI CCWGG 1 cut(s) 735
AjuI GAANNNNNNNTTGG 2 cut(s) 833, 865
AluBI AGCT 7 cut(s) 23, 34, 102, 116, 187, 286, 797
AluI AGCT 7 cut(s) 23, 34, 102, 116, 187, 286, 797
Alw21I GWGCWC 2 cut(s) 25, 209
Alw26I GTCTC 1 cut(s) 544
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 3 cut(s) 58, 151, 372
ApeKI GCWGC 5 cut(s) 4, 52, 113, 626, 719
ApoI RAATTY 1 cut(s) 175
Asp700I GAANNNNTTC 1 cut(s) 596
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 858
AsuC2I CCSGG 1 cut(s) 761
AsuHPI GGTGA 1 cut(s) 184
AvaII GGWCC 1 cut(s) 858
BanII GRGCYC 2 cut(s) 25, 50
Bbv12I GWGCWC 2 cut(s) 25, 209
BbvI GCAGC 4 cut(s) 64, 125, 613, 706
BccI CCATC 1 cut(s) 689
BceAI ACGGC 2 cut(s) 187, 217
BcgI CGANNNNNNTGC 2 cut(s) 65, 99
BciT130I CCWGG 1 cut(s) 737
BcnI CCSGG 1 cut(s) 761
BcoDI GTCTC 1 cut(s) 544
BfrI CTTAAG 1 cut(s) 281
BisI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
BlsI GCNGC 6 cut(s) 6, 42, 54, 115, 628, 721
Bme1390I CCNGG 2 cut(s) 737, 761
Bme18I GGWCC 1 cut(s) 858
BmgT120I GGNCC 1 cut(s) 858
BmiI GGNNCC 2 cut(s) 123, 859
BmrFI CCNGG 2 cut(s) 737, 761
BmsI GCATC 2 cut(s) 613, 731
BplI GAGNNNNNCTC 2 cut(s) 7, 39
BpuEI CTTGAG 1 cut(s) 342
BpuMI CCSGG 1 cut(s) 761
BsaJI CCNNGG 3 cut(s) 8, 67, 108
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 2 cut(s) 526, 742
Bse118I RCCGGY 2 cut(s) 370, 456
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 747
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 1 cut(s) 737
BseDI CCNNGG 3 cut(s) 8, 67, 108
BseGI GGATG 2 cut(s) 582, 658
BseLI CCNNNNNNNGG 2 cut(s) 526, 742
BseMI GCAATG 1 cut(s) 747
BseMII CTCAG 2 cut(s) 44, 557
BseNI ACTGG 1 cut(s) 167
BseXI GCAGC 4 cut(s) 64, 125, 613, 706
BseYI CCCAGC 2 cut(s) 43, 548
Bsh1236I CGCG 2 cut(s) 40, 94
BshFI GGCC 3 cut(s) 60, 153, 374
BsiHKAI GWGCWC 2 cut(s) 25, 209
BsiSI CCGG 6 cut(s) 224, 251, 371, 457, 760, 807
BslI CCNNNNNNNGG 2 cut(s) 526, 742
BsmAI GTCTC 1 cut(s) 544
BsnI GGCC 3 cut(s) 60, 153, 374
Bsp1286I GDGCHC 3 cut(s) 25, 50, 209
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 1 cut(s) 655
BspACI CCGC 1 cut(s) 40
BspANI GGCC 3 cut(s) 60, 153, 374
BspCNI CTCAG 2 cut(s) 43, 558
BspEI TCCGGA 1 cut(s) 223
BspFNI CGCG 2 cut(s) 40, 94
BspLI GGNNCC 2 cut(s) 123, 859
BspTI CTTAAG 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 747
BsrFI RCCGGY 2 cut(s) 370, 456
BsrI ACTGG 1 cut(s) 167
BssAI RCCGGY 2 cut(s) 370, 456
BssECI CCNNGG 3 cut(s) 8, 67, 108
BssMI GATC 1 cut(s) 655
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 737
Bst4CI ACNGT 1 cut(s) 733
BstAFI CTTAAG 1 cut(s) 281
BstC8I GCNNGC 2 cut(s) 50, 305
BstDEI CTNAG 5 cut(s) 30, 198, 533, 543, 566
BstDSI CCRYGG 1 cut(s) 67
BstF5I GGATG 2 cut(s) 582, 658
BstFNI CGCG 2 cut(s) 40, 94
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 1 cut(s) 658
BstMAI GTCTC 1 cut(s) 544
BstMBI GATC 1 cut(s) 655
BstMWI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
BstNI CCWGG 1 cut(s) 737
BstSCI CCNGG 2 cut(s) 735, 759
BstUI CGCG 2 cut(s) 40, 94
BstV1I GCAGC 4 cut(s) 64, 125, 613, 706
BsuRI GGCC 3 cut(s) 60, 153, 374
BtgI CCRYGG 1 cut(s) 67
BtsCI GGATG 2 cut(s) 582, 658
BtsIMutI CAGTG 1 cut(s) 174
Cac8I GCNNGC 2 cut(s) 50, 305
CfoI GCGC 1 cut(s) 96
Cfr10I RCCGGY 2 cut(s) 370, 456
Cfr13I GGNCC 1 cut(s) 858
Csp6I GTAC 1 cut(s) 431
CviAII CATG 3 cut(s) 289, 521, 817
CviQI GTAC 1 cut(s) 431
DdeI CTNAG 5 cut(s) 30, 198, 533, 543, 566
DpnI GATC 1 cut(s) 657
DpnII GATC 1 cut(s) 655
EaeI YGGCCR 1 cut(s) 372
Ecl136II GAGCTC 1 cut(s) 23
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 153
Eco24I GRGCYC 2 cut(s) 25, 50
Eco47I GGWCC 1 cut(s) 858
Eco53kI GAGCTC 1 cut(s) 23
EcoICRI GAGCTC 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 735
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 2 cut(s) 25, 50
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 3 cut(s) 292, 524, 820
FatI CATG 3 cut(s) 288, 520, 816
FauNDI CATATG 3 cut(s) 418, 438, 671
Fnu4HI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
FokI GGATG 2 cut(s) 589, 665
FriOI GRGCYC 2 cut(s) 25, 50
Fsp4HI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
GlaI GCGC 1 cut(s) 95
GluI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
GsaI CCCAGC 2 cut(s) 47, 552
HaeIII GGCC 3 cut(s) 60, 153, 374
HapII CCGG 6 cut(s) 224, 251, 371, 457, 760, 807
HhaI GCGC 1 cut(s) 96
Hin1II CATG 3 cut(s) 292, 524, 820
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 3 cut(s) 227, 348, 537
HpaII CCGG 6 cut(s) 224, 251, 371, 457, 760, 807
HphI GGTGA 1 cut(s) 184
Hpy166II GTNNAC 2 cut(s) 556, 822
Hpy188I TCNGA 1 cut(s) 691
Hpy188III TCNNGA 6 cut(s) 143, 224, 638, 726, 838, 861
Hpy8I GTNNAC 2 cut(s) 556, 822
HpyAV CCTTC 2 cut(s) 473, 574
HpyCH4III ACNGT 1 cut(s) 733
HpyCH4V TGCA 1 cut(s) 722
HpyF10VI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
HpyF3I CTNAG 5 cut(s) 30, 198, 533, 543, 566
Hsp92II CATG 3 cut(s) 292, 524, 820
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 1 cut(s) 655
LmnI GCTCC 2 cut(s) 15, 127
Lsp1109I GCAGC 4 cut(s) 64, 125, 613, 706
LweI GCATC 2 cut(s) 613, 731
MalI GATC 1 cut(s) 657
MboI GATC 1 cut(s) 655
MboII GAAGA 1 cut(s) 604
MhlI GDGCHC 3 cut(s) 25, 50, 209
MluCI AATT 3 cut(s) 175, 811, 848
MlyI GAGTC 3 cut(s) 236, 357, 546
MroI TCCGGA 1 cut(s) 223
MroXI GAANNNNTTC 1 cut(s) 596
MseI TTAA 4 cut(s) 267, 282, 408, 782
MspA1I CMGCKG 1 cut(s) 116
MspCI CTTAAG 1 cut(s) 281
MspI CCGG 6 cut(s) 224, 251, 371, 457, 760, 807
MspR9I CCNGG 2 cut(s) 737, 761
MvaI CCWGG 1 cut(s) 737
MvnI CGCG 2 cut(s) 40, 94
MwoI GCNNNNNNNGC 6 cut(s) 40, 49, 113, 119, 309, 623
NciI CCSGG 1 cut(s) 761
NdeI CATATG 3 cut(s) 418, 438, 671
NdeII GATC 1 cut(s) 655
NlaIII CATG 3 cut(s) 292, 524, 820
NlaIV GGNNCC 2 cut(s) 123, 859
NmeAIII GCCGAG 1 cut(s) 33
PceI AGGCCT 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 596
PflMI CCANNNNNTGG 2 cut(s) 526, 742
PkrI GCNGC 6 cut(s) 6, 42, 54, 115, 628, 721
PleI GAGTC 3 cut(s) 235, 356, 545
PpsI GAGTC 3 cut(s) 235, 356, 545
Psp124BI GAGCTC 1 cut(s) 25
Psp6I CCWGG 1 cut(s) 735
PspFI CCCAGC 2 cut(s) 43, 548
PspGI CCWGG 1 cut(s) 735
PspN4I GGNNCC 2 cut(s) 123, 859
PspPI GGNCC 1 cut(s) 858
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 1 cut(s) 432
RsaNI GTAC 1 cut(s) 431
SacI GAGCTC 1 cut(s) 25
SaqAI TTAA 4 cut(s) 267, 282, 408, 782
SatI GCNGC 6 cut(s) 5, 41, 53, 114, 627, 720
Sau3AI GATC 1 cut(s) 655
Sau96I GGNCC 1 cut(s) 858
SchI GAGTC 3 cut(s) 236, 357, 546
ScrFI CCNGG 2 cut(s) 737, 761
SduI GDGCHC 3 cut(s) 25, 50, 209
SetI ASST 9 cut(s) 14, 25, 36, 104, 118, 189, 288, 484, 799
SfaNI GCATC 2 cut(s) 613, 731
SinI GGWCC 1 cut(s) 858
SmlI CTYRAG 2 cut(s) 281, 357
SmoI CTYRAG 2 cut(s) 281, 357
Sse9I AATT 3 cut(s) 175, 811, 848
SseBI AGGCCT 1 cut(s) 153
SsiI CCGC 1 cut(s) 40
SspI AATATT 1 cut(s) 610
SstI GAGCTC 1 cut(s) 25
StuI AGGCCT 1 cut(s) 153
StyD4I CCNGG 2 cut(s) 735, 759
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 733
TaqI TCGA 2 cut(s) 322, 837
TasI AATT 3 cut(s) 175, 811, 848
TatI WGTACW 1 cut(s) 430
TauI GCSGC 1 cut(s) 43
Tru1I TTAA 4 cut(s) 267, 282, 408, 782
Tru9I TTAA 4 cut(s) 267, 282, 408, 782
TscAI CASTG 1 cut(s) 174
TseI GCWGC 5 cut(s) 4, 52, 113, 626, 719
TspDTI ATGAA 4 cut(s) 425, 593, 690, 805
TspGWI ACGGA 1 cut(s) 84
TspRI CASTG 1 cut(s) 174
Van91I CCANNNNNTGG 2 cut(s) 526, 742
Vha464I CTTAAG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 858
XapI RAATTY 1 cut(s) 175
XcmI CCANNNNNNNNNTGG 3 cut(s) 115, 166, 669
XmnI GAANNNNTTC 1 cut(s) 596
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.