Rh5DG535600

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000139
Physical Location & Seq
Forward (+)
82640430 .. 82646440
6011 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG535600.1

Sequence Viewer

Length: 999 bp
ATGTTTTTTTTAGCTCTGTCGCATTTCTTTCGGTTATATTGGTTGGGAAATCTCTTCAATGTCGGAGGAGGAGGAGGAGGGAATTCTCAATTGCAATGCTTGGAAGACTTAGCTGGAGATAATTTTCGGGTCACAAATAGCACATTTCCATCAGAGCAGCAGAGTAAAATTGTAATCGCTTCTTGCAATGGGTTGGTAATTCTAGGTAGTTATTATGAAGACTTGTCTATTTGGAACCCAACAACAGGATTCTTCCGCAAAATACCTGATCCAAAATTTTCATCAACAACGAAAGGGACTTGTAGGGATGCCTCCATAAGATATGGGTTTGGTTATGTTTCAGCCACTGATGATTACAAACTTGTTTTAGTAATTCCTGATGATTACTCTGGTCCTGCGGTGGATGTGGATGTCAACATCTTCATCTTTTCGGTGAGAGCTAACTCTTGGAGCAGTAGTAAAGGCTCCCACTGGTCATTCCCCAAAAACGGTTGGAGGAGGCAGCACTGCGGGGTTCTTTCAAATGAAGCAATCCATTGGGTTGTTAACTGCTATGAGTATGATGTGGATGGGAGTTTGGTAGTAGCATTCTGTATCTATGCTTTTGATTTGGCAAGTGAAGAGTTACGACTAATGCCTGTTCCTGGTTGTAACCAAGATGATGAGGAAAACTACCGTTTTGTTGGGAATTCTCAATTGCAATGCTTGGAAGACTTAGCTGGAGATAATTTTCGGGTCACAAATAGCACATTTCCATCAGAGCAGCAGAGTAAAACTTGTAATGGCTTCTTGCAATGGGCTGCCACTGACGATTACAAACTTGTTTTAGTAATTCCTGATGATTACTCTGGTCCTGCGGTGGATGTGGATGTCAACATCTTCATCTTTTCGGTGAGAGCTAACTCTTGGAGCAGTAGTAAAGGCTCCCACTGGTCATTCCCCAACAACGGTTGGAGGAGGCAGCACTGCGGGGTTCTTTCAAATGAAGCAATCCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

332

Amino Acids

37.14

Weight (kDa)

4.95

Isoelectric Point (pI)

37.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 46 - 218 2.4e-09 F-box associated beta propeller domain
FBA_1 PF07734 54 - 237 1.8e-13 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 256, 398, 510, 857, 969
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 3 cut(s) 82, 275, 688
AfiI CCNNNNNNNGG 4 cut(s) 245, 488, 644, 947
AgsI TTSAA 3 cut(s) 58, 522, 981
AjnI CCWGG 1 cut(s) 643
AluBI AGCT 5 cut(s) 14, 113, 440, 719, 899
AluI AGCT 5 cut(s) 14, 113, 440, 719, 899
AlwI GGATC 1 cut(s) 263
AlwNI CAGNNNCTG 1 cut(s) 347
ApeKI GCWGC 5 cut(s) 157, 502, 763, 800, 961
ApoI RAATTY 3 cut(s) 82, 275, 688
AspS9I GGNCC 2 cut(s) 392, 851
AsuHPI GGTGA 2 cut(s) 445, 904
AvaII GGWCC 2 cut(s) 392, 851
BbsI GAAGAC 3 cut(s) 111, 225, 717
BbvI GCAGC 5 cut(s) 169, 514, 775, 787, 973
BccI CCATC 3 cut(s) 157, 563, 763
BcgI CGANNNNNNTGC 2 cut(s) 11, 45
BciT130I CCWGG 1 cut(s) 645
BfaI CTAG 1 cut(s) 203
BisI GCNGC 5 cut(s) 158, 503, 764, 801, 962
BlsI GCNGC 5 cut(s) 159, 504, 765, 802, 963
Bme1390I CCNGG 1 cut(s) 645
Bme18I GGWCC 2 cut(s) 392, 851
BmgT120I GGNCC 2 cut(s) 392, 851
BmiI GGNNCC 3 cut(s) 236, 466, 925
BmrFI CCNGG 1 cut(s) 645
BmsI GCATC 1 cut(s) 298
BpiI GAAGAC 3 cut(s) 111, 225, 717
BpmI CTGGAG 2 cut(s) 135, 741
BsaXI ACNNNNNCTCC 4 cut(s) 442, 472, 901, 931
Bsc4I CCNNNNNNNGG 4 cut(s) 245, 488, 644, 947
Bse1I ACTGG 2 cut(s) 476, 935
Bse3DI GCAATG 4 cut(s) 101, 193, 707, 800
BseBI CCWGG 1 cut(s) 645
BseGI GGATG 6 cut(s) 313, 409, 415, 574, 868, 874
BseLI CCNNNNNNNGG 4 cut(s) 245, 488, 644, 947
BseMI GCAATG 4 cut(s) 101, 193, 707, 800
BseNI ACTGG 2 cut(s) 476, 935
BseRI GAGGAG 6 cut(s) 81, 84, 87, 90, 511, 970
BseXI GCAGC 5 cut(s) 169, 514, 775, 787, 973
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 4 cut(s) 245, 488, 644, 947
BsmFI GGGAC 1 cut(s) 310
BsmI GAATGC 1 cut(s) 587
Bsp143I GATC 1 cut(s) 268
BspACI CCGC 5 cut(s) 256, 398, 510, 857, 969
BspLI GGNNCC 3 cut(s) 236, 466, 925
BspPI GGATC 1 cut(s) 263
BsrDI GCAATG 4 cut(s) 101, 193, 707, 800
BsrI ACTGG 2 cut(s) 476, 935
BssMI GATC 1 cut(s) 268
Bst2UI CCWGG 1 cut(s) 645
Bst4CI ACNGT 3 cut(s) 491, 677, 950
Bst6I CTCTTC 2 cut(s) 59, 615
BstDEI CTNAG 2 cut(s) 109, 715
BstF5I GGATG 6 cut(s) 313, 409, 415, 574, 868, 874
BstKTI GATC 1 cut(s) 271
BstMBI GATC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 643
BstV1I GCAGC 5 cut(s) 169, 514, 775, 787, 973
BstV2I GAAGAC 3 cut(s) 111, 225, 717
BtsCI GGATG 6 cut(s) 313, 409, 415, 574, 868, 874
BtsI GCAGTG 2 cut(s) 505, 964
BtsIMutI CAGTG 6 cut(s) 345, 469, 505, 804, 928, 964
CaiI CAGNNNCTG 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 392, 851
DdeI CTNAG 2 cut(s) 109, 715
DpnI GATC 1 cut(s) 270
DpnII GATC 1 cut(s) 268
Eam1104I CTCTTC 2 cut(s) 59, 615
EarI CTCTTC 2 cut(s) 59, 615
Eco47I GGWCC 2 cut(s) 392, 851
EcoRI GAATTC 2 cut(s) 82, 688
EcoRII CCWGG 1 cut(s) 643
FaiI YATR 8 cut(s) 37, 216, 317, 324, 336, 555, 561, 600
FaqI GGGAC 1 cut(s) 310
FauI CCCGC 2 cut(s) 503, 962
Fnu4HI GCNGC 5 cut(s) 158, 503, 764, 801, 962
FokI GGATG 6 cut(s) 320, 416, 422, 581, 875, 881
Fsp4HI GCNGC 5 cut(s) 158, 503, 764, 801, 962
FspBI CTAG 1 cut(s) 203
GluI GCNGC 5 cut(s) 158, 503, 764, 801, 962
GsuI CTGGAG 2 cut(s) 135, 741
HincII GTYRAC 3 cut(s) 415, 547, 874
HindII GTYRAC 3 cut(s) 415, 547, 874
HinfI GANTC 1 cut(s) 249
HpaI GTTAAC 1 cut(s) 547
HphI GGTGA 2 cut(s) 445, 904
Hpy166II GTNNAC 3 cut(s) 415, 547, 874
Hpy188I TCNGA 3 cut(s) 65, 154, 760
Hpy188III TCNNGA 2 cut(s) 377, 836
Hpy8I GTNNAC 3 cut(s) 415, 547, 874
HpyCH4III ACNGT 3 cut(s) 491, 677, 950
HpyCH4V TGCA 4 cut(s) 94, 186, 700, 793
HpyF3I CTNAG 2 cut(s) 109, 715
KspAI GTTAAC 1 cut(s) 547
Kzo9I GATC 1 cut(s) 268
LmnI GCTCC 4 cut(s) 450, 470, 909, 929
Lsp1109I GCAGC 5 cut(s) 169, 514, 775, 787, 973
LweI GCATC 1 cut(s) 298
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 4 cut(s) 130, 624, 650, 736
MalI GATC 1 cut(s) 270
MboI GATC 1 cut(s) 268
MboII GAAGA 8 cut(s) 46, 116, 230, 244, 412, 632, 722, 871
MfeI CAATTG 2 cut(s) 89, 695
MmeI TCCRAC 3 cut(s) 43, 473, 932
MseI TTAA 1 cut(s) 546
MspR9I CCNGG 1 cut(s) 645
MunI CAATTG 2 cut(s) 89, 695
Mva1269I GAATGC 1 cut(s) 587
MvaI CCWGG 1 cut(s) 645
NdeII GATC 1 cut(s) 268
NlaIV GGNNCC 3 cut(s) 236, 466, 925
NmuCI GTSAC 2 cut(s) 130, 736
PctI GAATGC 1 cut(s) 587
PfeI GAWTC 1 cut(s) 249
PkrI GCNGC 5 cut(s) 159, 504, 765, 802, 963
Psp6I CCWGG 1 cut(s) 643
PspGI CCWGG 1 cut(s) 643
PspN4I GGNNCC 3 cut(s) 236, 466, 925
PspPI GGNCC 2 cut(s) 392, 851
PstNI CAGNNNCTG 1 cut(s) 347
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 5 cut(s) 158, 503, 764, 801, 962
Sau3AI GATC 1 cut(s) 268
Sau96I GGNCC 2 cut(s) 392, 851
ScrFI CCNGG 1 cut(s) 645
SetI ASST 7 cut(s) 16, 115, 208, 268, 442, 721, 901
SfaNI GCATC 1 cut(s) 298
SinI GGWCC 2 cut(s) 392, 851
SsiI CCGC 5 cut(s) 256, 398, 510, 857, 969
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 643
TaaI ACNGT 3 cut(s) 491, 677, 950
TfiI GAWTC 1 cut(s) 249
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 6 cut(s) 352, 476, 512, 811, 935, 971
TseFI GTSAC 2 cut(s) 130, 736
TseI GCWGC 5 cut(s) 157, 502, 763, 800, 961
Tsp45I GTSAC 2 cut(s) 130, 736
TspDTI ATGAA 6 cut(s) 231, 270, 412, 540, 871, 999
TspRI CASTG 6 cut(s) 352, 476, 512, 811, 935, 971
VpaK11BI GGWCC 2 cut(s) 392, 851
XapI RAATTY 3 cut(s) 82, 275, 688
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.