Rmu_sc0002863.1_g000037

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002863.1
OG0000139
Physical Location & Seq
Reverse (-)
133019 .. 134846
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002863.1_g000037.1.cds

Sequence Viewer

Length: 726 bp
atggaagtacttgtgttctcagtcagagccaactgttggaaagttgttaaagctccttacttgacgccataccgcccctggtctgaagaattggggacttattcaaatggagcaattcattgggtcagtcgccacgaacctgggtttttggagccacctgtgtatgcttttgatctggcaaatgagaagtttcgggacatgccattgcccgttcttagccataatgaatatgtaatgacgcaaacaagaactgccgttcttttaggaggatgtctttgtgtgatgtttcaggattgtaaaaagaacagtgaattttgggcgatgaaagagtatgggctgcctgaatcttgggttaaactctttgggtttgagttaaatgatttaccagatgtgtttgattcattctttagcacctttttctgggatcctattttcattacagaagacggtacagttgtgatcaaagtgccttccaagatagagttggtcaggattaaatgcggtaaagaagagaagccagtctgcaccaaccggtaccgtcttgaggaggtgccggcatgtactgatggatttgatgccgcgcttgaagaagaagtcaggtcacgggactaccccaacgactgcaccccgcggtgctggcacgcctgcgcaaccactctcccaaaagagactgtttgcacaccagctggttttggagccaaacactattgctggtttctattttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

241

Amino Acids

27.79

Weight (kDa)

5.23

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 649
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 534, 550
AccB7I CCANNNNNTGG 1 cut(s) 36
AccII CGCG 2 cut(s) 581, 631
AciI CCGC 5 cut(s) 73, 501, 579, 629, 631
AclWI GGATC 2 cut(s) 419, 432
AcsI RAATTY 1 cut(s) 311
AcuI CTGAAG 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 65
AfaI GTAC 4 cut(s) 9, 451, 536, 562
AfiI CCNNNNNNNGG 3 cut(s) 36, 420, 544
AgeI ACCGGT 1 cut(s) 531
AgsI TTSAA 2 cut(s) 105, 587
AjnI CCWGG 2 cut(s) 77, 139
AluBI AGCT 2 cut(s) 53, 686
AluI AGCT 2 cut(s) 53, 686
Alw26I GTCTC 1 cut(s) 662
AlwI GGATC 2 cut(s) 419, 432
ApeKI GCWGC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 311
AsiGI ACCGGT 1 cut(s) 531
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 583, 650
BaeI ACNNNNGTAYC 2 cut(s) 441, 474
BamHI GGATCC 1 cut(s) 424
BanI GGYRCC 2 cut(s) 534, 550
BbsI GAAGAC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 324
BccI CCATC 1 cut(s) 560
BceAI ACGGC 1 cut(s) 239
BciT130I CCWGG 2 cut(s) 79, 141
BclI TGATCA 1 cut(s) 459
BcoDI GTCTC 1 cut(s) 662
BisI GCNGC 2 cut(s) 338, 579
BlsI GCNGC 2 cut(s) 339, 580
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 2 cut(s) 79, 141
BmiI GGNNCC 5 cut(s) 153, 426, 536, 552, 697
BmrFI CCNGG 2 cut(s) 79, 141
BmsI GCATC 1 cut(s) 565
BpiI GAAGAC 1 cut(s) 450
BpuEI CTTGAG 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 77, 140, 629
BsaWI WCCGGW 1 cut(s) 531
Bsc4I CCNNNNNNNGG 3 cut(s) 36, 420, 544
Bse118I RCCGGY 2 cut(s) 531, 553
Bse1I ACTGG 1 cut(s) 518
Bse3DI GCAATG 1 cut(s) 203
BseBI CCWGG 2 cut(s) 79, 141
BseDI CCNNGG 3 cut(s) 77, 140, 629
BseGI GGATG 1 cut(s) 275
BseLI CCNNNNNNNGG 3 cut(s) 36, 420, 544
BseMI GCAATG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 33
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 560
BseXI GCAGC 1 cut(s) 324
BsgI GTGCAG 2 cut(s) 508, 607
Bsh1236I CGCG 2 cut(s) 581, 631
BshNI GGYRCC 2 cut(s) 534, 550
BshTI ACCGGT 1 cut(s) 531
BsiSI CCGG 2 cut(s) 532, 554
BslFI GGGAC 3 cut(s) 109, 209, 620
BslI CCNNNNNNNGG 3 cut(s) 36, 420, 544
BsmAI GTCTC 1 cut(s) 662
BsmFI GGGAC 3 cut(s) 109, 209, 620
Bsp143I GATC 3 cut(s) 172, 424, 459
BspACI CCGC 5 cut(s) 73, 501, 579, 629, 631
BspCNI CTCAG 1 cut(s) 32
BspFNI CGCG 2 cut(s) 581, 631
BspLI GGNNCC 5 cut(s) 153, 426, 536, 552, 697
BspPI GGATC 2 cut(s) 419, 432
BspT107I GGYRCC 2 cut(s) 534, 550
BsrDI GCAATG 1 cut(s) 203
BsrFI RCCGGY 2 cut(s) 531, 553
BsrI ACTGG 1 cut(s) 518
BssAI RCCGGY 2 cut(s) 531, 553
BssECI CCNNGG 3 cut(s) 77, 140, 629
BssMI GATC 3 cut(s) 172, 424, 459
BssNI GRCGYC 1 cut(s) 65
Bst2UI CCWGG 2 cut(s) 79, 141
Bst4CI ACNGT 6 cut(s) 35, 308, 449, 454, 539, 673
Bst6I CTCTTC 1 cut(s) 504
BstACI GRCGYC 1 cut(s) 65
BstC8I GCNNGC 4 cut(s) 555, 638, 642, 646
BstDEI CTNAG 2 cut(s) 19, 215
BstDSI CCRYGG 1 cut(s) 629
BstF5I GGATG 1 cut(s) 275
BstFNI CGCG 2 cut(s) 581, 631
BstHHI GCGC 2 cut(s) 583, 650
BstKTI GATC 3 cut(s) 175, 427, 462
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 3 cut(s) 172, 424, 459
BstMWI GCNNNNNNNGC 1 cut(s) 637
BstNI CCWGG 2 cut(s) 79, 141
BstNSI RCATGY 2 cut(s) 202, 561
BstSCI CCNGG 2 cut(s) 77, 139
BstUI CGCG 2 cut(s) 581, 631
BstV1I GCAGC 1 cut(s) 324
BstV2I GAAGAC 1 cut(s) 450
BstX2I RGATCY 1 cut(s) 424
BstXI CCANNNNNNTGG 1 cut(s) 140
BstYI RGATCY 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 629
BtgZI GCGATG 1 cut(s) 335
BtsCI GGATG 1 cut(s) 275
BtsIMutI CAGTG 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 555, 638, 642, 646
CfoI GCGC 2 cut(s) 583, 650
Cfr10I RCCGGY 2 cut(s) 531, 553
Cfr42I CCGCGG 1 cut(s) 632
CseI GACGC 2 cut(s) 73, 247
Csp6I GTAC 4 cut(s) 8, 450, 535, 561
CspAI ACCGGT 1 cut(s) 531
CviAII CATG 2 cut(s) 199, 558
CviJI RGCY 8 cut(s) 29, 53, 154, 219, 337, 517, 686, 698
CviKI_1 RGCY 8 cut(s) 29, 53, 154, 219, 337, 517, 686, 698
CviQI GTAC 4 cut(s) 8, 450, 535, 561
DdeI CTNAG 2 cut(s) 19, 215
DpnI GATC 3 cut(s) 174, 426, 461
DpnII GATC 3 cut(s) 172, 424, 459
Eam1104I CTCTTC 1 cut(s) 504
EarI CTCTTC 1 cut(s) 504
Eco57I CTGAAG 1 cut(s) 105
EcoRII CCWGG 2 cut(s) 77, 139
FaeI CATG 2 cut(s) 202, 561
FaiI YATR 7 cut(s) 70, 165, 200, 222, 231, 333, 559
FaqI GGGAC 3 cut(s) 109, 209, 620
FatI CATG 2 cut(s) 198, 557
FauI CCCGC 1 cut(s) 636
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 2 cut(s) 338, 579
FokI GGATG 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 338, 579
FspI TGCGCA 1 cut(s) 649
GlaI GCGC 2 cut(s) 582, 649
GluI GCNGC 2 cut(s) 338, 579
HapII CCGG 2 cut(s) 532, 554
HgaI GACGC 2 cut(s) 73, 247
HhaI GCGC 2 cut(s) 583, 650
Hin1I GRCGYC 1 cut(s) 65
Hin1II CATG 2 cut(s) 202, 561
Hin6I GCGC 2 cut(s) 581, 648
HinP1I GCGC 2 cut(s) 581, 648
HinfI GANTC 2 cut(s) 344, 398
HpaII CCGG 2 cut(s) 532, 554
Hpy188I TCNGA 2 cut(s) 26, 85
Hpy188III TCNNGA 4 cut(s) 194, 290, 490, 542
HpyAV CCTTC 1 cut(s) 480
HpyCH4III ACNGT 6 cut(s) 35, 308, 449, 454, 539, 673
HpyCH4V TGCA 3 cut(s) 525, 624, 678
HpyF10VI GCNNNNNNNGC 1 cut(s) 637
HpyF3I CTNAG 2 cut(s) 19, 215
Hsp92I GRCGYC 1 cut(s) 65
Hsp92II CATG 2 cut(s) 202, 561
HspAI GCGC 2 cut(s) 581, 648
KpnI GGTACC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 553
KroNI GCCGGC 1 cut(s) 555
Ksp22I TGATCA 1 cut(s) 459
KspI CCGCGG 1 cut(s) 632
Kzo9I GATC 3 cut(s) 172, 424, 459
LmnI GCTCC 4 cut(s) 58, 110, 151, 695
Lsp1109I GCAGC 1 cut(s) 324
LweI GCATC 1 cut(s) 565
MaeIII GTNAC 1 cut(s) 600
MalI GATC 3 cut(s) 174, 426, 461
MboI GATC 3 cut(s) 172, 424, 459
MboII GAAGA 5 cut(s) 98, 455, 521, 599, 602
MflI RGATCY 1 cut(s) 424
MluCI AATT 3 cut(s) 89, 114, 311
MmeI TCCRAC 1 cut(s) 17
MnlI CCTC 3 cut(s) 260, 538, 541
MroNI GCCGGC 1 cut(s) 553
MseI TTAA 4 cut(s) 48, 354, 374, 495
MspA1I CMGCKG 2 cut(s) 631, 686
MspI CCGG 2 cut(s) 532, 554
MspR9I CCNGG 2 cut(s) 79, 141
MvaI CCWGG 2 cut(s) 79, 141
MvnI CGCG 2 cut(s) 581, 631
MwoI GCNNNNNNNGC 1 cut(s) 637
NaeI GCCGGC 1 cut(s) 555
NdeII GATC 3 cut(s) 172, 424, 459
NgoMIV GCCGGC 1 cut(s) 553
NlaIII CATG 2 cut(s) 202, 561
NlaIV GGNNCC 5 cut(s) 153, 426, 536, 552, 697
NmuCI GTSAC 1 cut(s) 600
NsbI TGCGCA 1 cut(s) 649
NspI RCATGY 2 cut(s) 202, 561
PdiI GCCGGC 1 cut(s) 555
PfeI GAWTC 2 cut(s) 344, 398
PflMI CCANNNNNTGG 1 cut(s) 36
PinAI ACCGGT 1 cut(s) 531
PkrI GCNGC 2 cut(s) 339, 580
Psp6I CCWGG 2 cut(s) 77, 139
PspGI CCWGG 2 cut(s) 77, 139
PspN4I GGNNCC 5 cut(s) 153, 426, 536, 552, 697
PsuI RGATCY 1 cut(s) 424
PvuII CAGCTG 1 cut(s) 686
RsaI GTAC 4 cut(s) 9, 451, 536, 562
RsaNI GTAC 4 cut(s) 8, 450, 535, 561
SacII CCGCGG 1 cut(s) 632
SaqAI TTAA 4 cut(s) 48, 354, 374, 495
SatI GCNGC 2 cut(s) 338, 579
Sau3AI GATC 3 cut(s) 172, 424, 459
ScaI AGTACT 1 cut(s) 9
ScrFI CCNGG 2 cut(s) 79, 141
SetI ASST 7 cut(s) 55, 142, 160, 416, 552, 602, 688
SfaNI GCATC 1 cut(s) 565
Sfr303I CCGCGG 1 cut(s) 632
SgrBI CCGCGG 1 cut(s) 632
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 3 cut(s) 89, 114, 311
SsiI CCGC 5 cut(s) 73, 501, 579, 629, 631
StyD4I CCNGG 2 cut(s) 77, 139
TaaI ACNGT 6 cut(s) 35, 308, 449, 454, 539, 673
TasI AATT 3 cut(s) 89, 114, 311
TatI WGTACW 2 cut(s) 7, 560
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 2 cut(s) 344, 398
Tru1I TTAA 4 cut(s) 48, 354, 374, 495
Tru9I TTAA 4 cut(s) 48, 354, 374, 495
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 1 cut(s) 600
TseI GCWGC 1 cut(s) 337
Tsp45I GTSAC 1 cut(s) 600
TspDTI ATGAA 5 cut(s) 107, 240, 338, 390, 424
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 36
XapI RAATTY 1 cut(s) 311
XceI RCATGY 2 cut(s) 202, 561
XcmI CCANNNNNNNNNTGG 2 cut(s) 75, 481
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.