Rmu_sc0033228.1_g000001

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0033228.1
OG0000139
Physical Location & Seq
Reverse (-)
1 .. 598
598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0033228.1_g000001.1.cds

Sequence Viewer

Length: 402 bp
atgttgacgaaggaggagcagcttgataatgatgtccacctccctgaacatgttgtactcaacattctctaccggttgccattcaagtccttgatccgcttcacttgtgtctctaaacgctggcgttctcttatcatttctgatccccaatttgccaactcccatttccgactctcagcatctcagctccgtcgaaatgtcctcatctccacccaccctatcttgatttcaaaaggtacactcggaacaacccatactatgttaccctctcgatttcactccttagacgataacttttcggtcagaagtctcaccttcccatccgagccgaatcgcgacattgtagtaatgggctcctgcaatggtttggtggttttaggcaagttctatcgccatgctttg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

134

Amino Acids

15.36

Weight (kDa)

9.91

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 336
AciI CCGC 1 cut(s) 97
AclWI GGATC 2 cut(s) 88, 137
AfaI GTAC 2 cut(s) 57, 238
AflIII ACRYGT 1 cut(s) 49
AgeI ACCGGT 1 cut(s) 72
AgsI TTSAA 2 cut(s) 85, 231
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AluBI AGCT 2 cut(s) 22, 187
AluI AGCT 2 cut(s) 22, 187
Alw26I GTCTC 2 cut(s) 115, 314
AlwI GGATC 2 cut(s) 88, 137
ApeKI GCWGC 1 cut(s) 19
AsiGI ACCGGT 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 31
BccI CCATC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 115, 314
BisI GCNGC 1 cut(s) 20
BlsI GCNGC 1 cut(s) 21
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 1 cut(s) 188
BsaWI WCCGGW 1 cut(s) 72
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 367
BseGI GGATG 1 cut(s) 320
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 189, 197
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 336
BshTI ACCGGT 1 cut(s) 72
BsiSI CCGG 1 cut(s) 73
BsmAI GTCTC 2 cut(s) 115, 314
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 2 cut(s) 93, 142
Bsp68I TCGCGA 1 cut(s) 336
BspACI CCGC 1 cut(s) 97
BspCNI CTCAG 2 cut(s) 188, 196
BspFNI CGCG 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 88, 137
BsrDI GCAATG 1 cut(s) 367
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 2 cut(s) 93, 142
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 175, 183, 283
BstF5I GGATG 1 cut(s) 320
BstFNI CGCG 1 cut(s) 336
BstKTI GATC 2 cut(s) 96, 145
BstMAI GTCTC 2 cut(s) 115, 314
BstMBI GATC 2 cut(s) 93, 142
BstNSI RCATGY 1 cut(s) 53
BstUI CGCG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 31
BtsCI GGATG 1 cut(s) 320
BtuMI TCGCGA 1 cut(s) 336
Cac8I GCNNGC 1 cut(s) 122
Cfr10I RCCGGY 1 cut(s) 72
Csp6I GTAC 2 cut(s) 56, 237
CspAI ACCGGT 1 cut(s) 72
CviAII CATG 2 cut(s) 50, 395
CviJI RGCY 4 cut(s) 22, 187, 328, 354
CviKI_1 RGCY 4 cut(s) 22, 187, 328, 354
CviQI GTAC 2 cut(s) 56, 237
DdeI CTNAG 3 cut(s) 175, 183, 283
DpnI GATC 2 cut(s) 95, 144
DpnII GATC 2 cut(s) 93, 142
Eco24I GRGCYC 1 cut(s) 356
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 2 cut(s) 53, 398
FaiI YATR 4 cut(s) 51, 255, 260, 396
FatI CATG 2 cut(s) 49, 394
Fnu4HI GCNGC 1 cut(s) 20
FokI GGATG 1 cut(s) 307
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 20
GluI GCNGC 1 cut(s) 20
HapII CCGG 1 cut(s) 73
Hin1II CATG 2 cut(s) 53, 398
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 171, 331
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 6, 37, 239
Hpy188I TCNGA 5 cut(s) 142, 170, 245, 305, 325
Hpy188III TCNNGA 3 cut(s) 223, 270, 335
Hpy8I GTNNAC 3 cut(s) 6, 37, 239
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 4, 325
HpyCH4V TGCA 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 175, 183, 283
Hsp92II CATG 2 cut(s) 53, 398
Kzo9I GATC 2 cut(s) 93, 142
LmnI GCTCC 3 cut(s) 16, 192, 359
LpnPI CCDG 4 cut(s) 57, 86, 106, 370
Lsp1109I GCAGC 1 cut(s) 31
LweI GCATC 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 261
MalI GATC 2 cut(s) 95, 144
MboI GATC 2 cut(s) 93, 142
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 1 cut(s) 149
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 4 cut(s) 7, 50, 212, 277
MspI CCGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 336
NdeII GATC 2 cut(s) 93, 142
NlaIII CATG 2 cut(s) 53, 398
NlaIV GGNNCC 1 cut(s) 355
NruI TCGCGA 1 cut(s) 336
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 1 cut(s) 331
PinAI ACCGGT 1 cut(s) 72
PkrI GCNGC 1 cut(s) 21
PleI GAGTC 1 cut(s) 165
PpsI GAGTC 1 cut(s) 165
PscI ACATGT 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 355
PsrI GAACNNNNNNTAC 4 cut(s) 39, 71, 238, 270
RruI TCGCGA 1 cut(s) 336
RsaI GTAC 2 cut(s) 57, 238
RsaNI GTAC 2 cut(s) 56, 237
SatI GCNGC 1 cut(s) 20
Sau3AI GATC 2 cut(s) 93, 142
SchI GAGTC 1 cut(s) 165
SduI GDGCHC 1 cut(s) 356
SetI ASST 5 cut(s) 24, 42, 189, 238, 317
SfaNI GCATC 1 cut(s) 188
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 97
TaqI TCGA 2 cut(s) 193, 271
TaqII GACCGA 1 cut(s) 289
TasI AATT 1 cut(s) 149
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 331
TseI GCWGC 1 cut(s) 19
TspGWI ACGGA 1 cut(s) 179
XceI RCATGY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.