Rh5CG546500

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000139
Physical Location & Seq
Reverse (-)
76208364 .. 76210924
2561 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG546500.1

Sequence Viewer

Length: 582 bp
ATGGGAGCTGTTTTCCGGCCACCACGTCCGGCCGGTCGCCGTGGCTGGATTGACGGACATGGGAGTCTTTCAAATGGAGCGATTCATTGGATCAACTATCCCATATATGGGGTATCAGACCCAACTATGGTTGCTTTTGATTTGGCAGAGGAGGAGTTTAGGCAAGTGCCATTGCCTGTTTTCAACCAAAATGAAGATGGCGTGCATTTGAGACAGATAAGAATTCAGGTTCTTTTAGGAGGAGGTCTTTGTGTATGGTCTCAGGATCTTTATGAGCAAAGTGAATTTTGGGTGATGAGAGATTATGGTGTGCCTGAATCTTGGGTTAAGCTCATTCAATTTAGTCGAGATGATTTACCAGATGAGTTCACTTTATGGAGTAGCTGGGATCCTACTTTTGTTTCAGAAGGTGGTACAATGTTGATCAAACTGCTTGACAAGAAGGAGTTGGTCTGGATTGAATGCCTTCAAGAAGAGAATCCGGTGTGCAGTGCCCAATATAGAATTGAAGAGTTTCCTGGGGCGATATTTGACGCGACTCTATATGATGAAACTTTAGTTTCACTACCTGAAGGATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

193

Amino Acids

22.08

Weight (kDa)

4.4

Isoelectric Point (pI)

54.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 63
AccII CGCG 1 cut(s) 536
AclWI GGATC 4 cut(s) 98, 273, 383, 396
AcoI YGGCCR 2 cut(s) 17, 30
AcsI RAATTY 2 cut(s) 222, 284
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 3 cut(s) 107, 108, 127
AgsI TTSAA 6 cut(s) 72, 184, 338, 461, 470, 509
AjiI CACGTC 1 cut(s) 26
AjnI CCWGG 1 cut(s) 517
AluBI AGCT 3 cut(s) 8, 331, 384
AluI AGCT 3 cut(s) 8, 331, 384
Alw26I GTCTC 2 cut(s) 205, 264
AlwI GGATC 4 cut(s) 98, 273, 383, 396
AoxI GGCC 2 cut(s) 17, 30
ApoI RAATTY 2 cut(s) 222, 284
Asp700I GAANNNNTTC 2 cut(s) 465, 513
AsuHPI GGTGA 1 cut(s) 304
BaeGI GKGCMC 1 cut(s) 496
BamHI GGATCC 1 cut(s) 388
BccI CCATC 1 cut(s) 191
BceAI ACGGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 519
BclI TGATCA 1 cut(s) 423
BcoDI GTCTC 2 cut(s) 205, 264
Bme1390I CCNGG 1 cut(s) 519
BmgBI CACGTC 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 390
BmrFI CCNGG 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 264
BsaJI CCNNGG 2 cut(s) 40, 518
BsaWI WCCGGW 1 cut(s) 481
Bsc4I CCNNNNNNNGG 3 cut(s) 107, 108, 127
Bse118I RCCGGY 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 170
BseBI CCWGG 1 cut(s) 519
BseDI CCNNGG 2 cut(s) 40, 518
BseLI CCNNNNNNNGG 3 cut(s) 107, 108, 127
BseMI GCAATG 1 cut(s) 170
BseMII CTCAG 1 cut(s) 275
BseRI GAGGAG 3 cut(s) 164, 167, 255
BseSI GKGCMC 1 cut(s) 496
BseX3I CGGCCG 1 cut(s) 30
BseYI CCCAGC 1 cut(s) 384
BsgI GTGCAG 1 cut(s) 508
Bsh1236I CGCG 1 cut(s) 536
Bsh1285I CGRYCG 2 cut(s) 33, 37
BshFI GGCC 2 cut(s) 19, 32
BsiEI CGRYCG 2 cut(s) 33, 37
BsiSI CCGG 4 cut(s) 16, 29, 33, 482
BslI CCNNNNNNNGG 3 cut(s) 107, 108, 127
BsmAI GTCTC 2 cut(s) 205, 264
BsmI GAATGC 1 cut(s) 467
BsnI GGCC 2 cut(s) 19, 32
Bso31I GGTCTC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 4 cut(s) 90, 265, 388, 423
BspANI GGCC 2 cut(s) 19, 32
BspCNI CTCAG 1 cut(s) 274
BspFNI CGCG 1 cut(s) 536
BspLI GGNNCC 1 cut(s) 390
BspPI GGATC 4 cut(s) 98, 273, 383, 396
BspTNI GGTCTC 1 cut(s) 264
BsrDI GCAATG 1 cut(s) 170
BsrFI RCCGGY 1 cut(s) 32
BssAI RCCGGY 1 cut(s) 32
BssECI CCNNGG 2 cut(s) 40, 518
BssMI GATC 4 cut(s) 90, 265, 388, 423
Bst2UI CCWGG 1 cut(s) 519
Bst6I CTCTTC 2 cut(s) 468, 504
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 1 cut(s) 40
BstFNI CGCG 1 cut(s) 536
BstKTI GATC 4 cut(s) 93, 268, 391, 426
BstMAI GTCTC 2 cut(s) 205, 264
BstMBI GATC 4 cut(s) 90, 265, 388, 423
BstMCI CGRYCG 2 cut(s) 33, 37
BstNI CCWGG 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 517
BstSLI GKGCMC 1 cut(s) 496
BstUI CGCG 1 cut(s) 536
BstX2I RGATCY 2 cut(s) 265, 388
BstYI RGATCY 2 cut(s) 265, 388
BstZI CGGCCG 1 cut(s) 30
BsuRI GGCC 2 cut(s) 19, 32
BtgI CCRYGG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 26
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 203
Cfr10I RCCGGY 1 cut(s) 32
CseI GACGC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 414
CviAII CATG 1 cut(s) 59
CviJI RGCY 6 cut(s) 8, 19, 32, 45, 331, 384
CviKI_1 RGCY 6 cut(s) 8, 19, 32, 45, 331, 384
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 1 cut(s) 261
DpnI GATC 4 cut(s) 92, 267, 390, 425
DpnII GATC 4 cut(s) 90, 265, 388, 423
DrdI GACNNNNNNGTC 1 cut(s) 63
DseDI GACNNNNNNGTC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 17, 30
EagI CGGCCG 1 cut(s) 30
Eam1104I CTCTTC 2 cut(s) 468, 504
EarI CTCTTC 2 cut(s) 468, 504
EclXI CGGCCG 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 264
Eco52I CGGCCG 1 cut(s) 30
EcoRI GAATTC 1 cut(s) 222
EcoRII CCWGG 1 cut(s) 517
FaeI CATG 1 cut(s) 62
FatI CATG 1 cut(s) 58
FbaI TGATCA 1 cut(s) 423
GsaI CCCAGC 1 cut(s) 388
HaeIII GGCC 2 cut(s) 19, 32
HapII CCGG 4 cut(s) 16, 29, 33, 482
HgaI GACGC 1 cut(s) 542
Hin1II CATG 1 cut(s) 62
HinfI GANTC 5 cut(s) 64, 82, 317, 478, 538
HpaII CCGG 4 cut(s) 16, 29, 33, 482
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 369
Hpy188I TCNGA 2 cut(s) 118, 406
Hpy188III TCNNGA 4 cut(s) 263, 347, 454, 470
Hpy8I GTNNAC 1 cut(s) 369
HpyAV CCTTC 4 cut(s) 401, 436, 476, 566
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 205, 489
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 25
Hsp92II CATG 1 cut(s) 62
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 4 cut(s) 90, 265, 388, 423
LmnI GCTCC 2 cut(s) 5, 77
MaeII ACGT 1 cut(s) 25
MalI GATC 4 cut(s) 92, 267, 390, 425
MboI GATC 4 cut(s) 90, 265, 388, 423
MboII GAAGA 3 cut(s) 206, 485, 521
MflI RGATCY 2 cut(s) 265, 388
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 4 cut(s) 222, 284, 338, 504
MlyI GAGTC 2 cut(s) 73, 532
MnlI CCTC 4 cut(s) 142, 145, 233, 236
MroXI GAANNNNTTC 2 cut(s) 465, 513
MseI TTAA 1 cut(s) 327
MspI CCGG 4 cut(s) 16, 29, 33, 482
MspR9I CCNGG 1 cut(s) 519
Mva1269I GAATGC 1 cut(s) 467
MvaI CCWGG 1 cut(s) 519
MvnI CGCG 1 cut(s) 536
NdeII GATC 4 cut(s) 90, 265, 388, 423
NlaIII CATG 1 cut(s) 62
NlaIV GGNNCC 1 cut(s) 390
PctI GAATGC 1 cut(s) 467
PdmI GAANNNNTTC 2 cut(s) 465, 513
PfeI GAWTC 3 cut(s) 82, 317, 478
PleI GAGTC 2 cut(s) 72, 532
PpsI GAGTC 2 cut(s) 72, 532
Psp6I CCWGG 1 cut(s) 517
PspFI CCCAGC 1 cut(s) 384
PspGI CCWGG 1 cut(s) 517
PspN4I GGNNCC 1 cut(s) 390
PsuI RGATCY 2 cut(s) 265, 388
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 327
Sau3AI GATC 4 cut(s) 90, 265, 388, 423
SchI GAGTC 2 cut(s) 73, 532
ScrFI CCNGG 1 cut(s) 519
SduI GDGCHC 1 cut(s) 496
SetI ASST 8 cut(s) 10, 28, 231, 247, 333, 386, 412, 571
Sse9I AATT 4 cut(s) 222, 284, 338, 504
StyD4I CCNGG 1 cut(s) 517
TaiI ACGT 1 cut(s) 28
TaqI TCGA 1 cut(s) 346
TasI AATT 4 cut(s) 222, 284, 338, 504
TfiI GAWTC 3 cut(s) 82, 317, 478
Tru1I TTAA 1 cut(s) 327
Tru9I TTAA 1 cut(s) 327
TscAI CASTG 1 cut(s) 496
TspDTI ATGAA 3 cut(s) 74, 207, 564
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 1 cut(s) 496
XapI RAATTY 2 cut(s) 222, 284
XcmI CCANNNNNNNNNTGG 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 465, 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.