Rroxscaffold_2G00084870

F-box-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000139
Physical Location & Seq
Forward (+)
7328357 .. 7328959
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00084870.1

Sequence Viewer

Length: 555 bp
ATGGGAGAGAAACCACAAAGTTTGCTGGATGGAGTGATAGCTTTTGCTAGTAGTGGTTTTGGTTATGTTTCCGCCACCGACGACTACAAATATGTTGCTTTAGCTAATGATATCGATTGCTCCACAAACACTATCAAAGGGACCAAGGCTGACATCTTCTCGTTGAGAACCAAGTCTTGGAAAAGAATTGAAGTCATCTTGTTCTATTACAAAGAGCAATCGGGGATTCTATCAAATGAAGCACTCCATTGGATCGATCACCTTGAATACAGAGGAGTTCCGGCAAATGCCATTGCCTGTTTCTATAACACTAGTTATGGCCGAAACAGAATGAGAGTTTTGGTTCTTTTAGGAGAATGGCTTTGTGTTTGGCATTCTAACAGATGTGATATTCAATTATGGATCATGAGAGAGTATAATGTTCATGAATCTTGGAACTTGCTCTATTATTTTCGGACAGATGATTTGCCTGTGAATGTTGCGAATGTGAGAATAAAACCAGTTTTCGTGACAGAAAGTGGTACACTCGTGCTCAGAGTGTTCGACAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

184

Amino Acids

21.29

Weight (kDa)

7.66

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 177
AciI CCGC 1 cut(s) 72
AclWI GGATC 2 cut(s) 260, 410
AcoI YGGCCR 1 cut(s) 319
AfaI GTAC 1 cut(s) 523
AfiI CCNNNNNNNGG 1 cut(s) 177
AgsI TTSAA 3 cut(s) 191, 266, 395
AhlI ACTAGT 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AluBI AGCT 2 cut(s) 41, 104
AluI AGCT 2 cut(s) 41, 104
Alw21I GWGCWC 1 cut(s) 534
AlwI GGATC 2 cut(s) 260, 410
AoxI GGCC 1 cut(s) 319
ArsI GACNNNNNNTTYG 2 cut(s) 448, 480
AspS9I GGNCC 1 cut(s) 141
AsuHPI GGTGA 1 cut(s) 251
AvaII GGWCC 1 cut(s) 141
BaeI ACNNNNGTAYC 2 cut(s) 513, 546
BauI CACGAG 1 cut(s) 527
Bbv12I GWGCWC 1 cut(s) 534
BccI CCATC 1 cut(s) 23
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 2 cut(s) 48, 312
Bme18I GGWCC 1 cut(s) 141
BmgT120I GGNCC 1 cut(s) 141
BmiI GGNNCC 1 cut(s) 142
Bsa29I ATCGAT 2 cut(s) 114, 255
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 1 cut(s) 500
Bse3DI GCAATG 1 cut(s) 291
BseCI ATCGAT 2 cut(s) 114, 255
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 547
BseNI ACTGG 1 cut(s) 500
BseRI GAGGAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 321
BshVI ATCGAT 2 cut(s) 114, 255
BsiHKAI GWGCWC 1 cut(s) 534
BsiSI CCGG 1 cut(s) 281
BslFI GGGAC 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 177
BsmFI GGGAC 1 cut(s) 154
BsmI GAATGC 1 cut(s) 373
BsnI GGCC 1 cut(s) 321
Bsp1286I GDGCHC 1 cut(s) 534
Bsp143I GATC 3 cut(s) 252, 256, 402
BspACI CCGC 1 cut(s) 72
BspANI GGCC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 546
BspDI ATCGAT 2 cut(s) 114, 255
BspHI TCATGA 2 cut(s) 405, 424
BspLI GGNNCC 1 cut(s) 142
BspPI GGATC 2 cut(s) 260, 410
BsrDI GCAATG 1 cut(s) 291
BsrI ACTGG 1 cut(s) 500
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 3 cut(s) 252, 256, 402
BssSI CACGAG 1 cut(s) 527
BssT1I CCWWGG 1 cut(s) 144
Bst2BI CACGAG 1 cut(s) 527
BstDEI CTNAG 1 cut(s) 533
BstF5I GGATG 1 cut(s) 34
BstKTI GATC 3 cut(s) 255, 259, 405
BstMBI GATC 3 cut(s) 252, 256, 402
Bsu15I ATCGAT 2 cut(s) 114, 255
BsuRI GGCC 1 cut(s) 321
BsuTUI ATCGAT 2 cut(s) 114, 255
BtsCI GGATG 1 cut(s) 34
CciI TCATGA 2 cut(s) 405, 424
Cfr13I GGNCC 1 cut(s) 141
ClaI ATCGAT 2 cut(s) 114, 255
Csp6I GTAC 1 cut(s) 522
CspCI CAANNNNNGTGG 1 cut(s) 38
CviAII CATG 2 cut(s) 406, 425
CviJI RGCY 5 cut(s) 41, 104, 149, 321, 361
CviKI_1 RGCY 5 cut(s) 41, 104, 149, 321, 361
CviQI GTAC 1 cut(s) 522
DdeI CTNAG 1 cut(s) 533
DpnI GATC 3 cut(s) 254, 258, 404
DpnII GATC 3 cut(s) 252, 256, 402
EaeI YGGCCR 1 cut(s) 319
EciI GGCGGA 1 cut(s) 61
Eco130I CCWWGG 1 cut(s) 144
Eco32I GATATC 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 141
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 409, 428
FaiI YATR 8 cut(s) 66, 93, 306, 318, 400, 407, 417, 426
FaqI GGGAC 1 cut(s) 154
FatI CATG 2 cut(s) 405, 424
FokI GGATG 1 cut(s) 41
FspBI CTAG 2 cut(s) 48, 312
HaeIII GGCC 1 cut(s) 321
HapII CCGG 1 cut(s) 281
Hin1II CATG 2 cut(s) 409, 428
HinfI GANTC 2 cut(s) 226, 428
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 251
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 456, 536
Hpy188III TCNNGA 3 cut(s) 406, 425, 508
Hpy8I GTNNAC 1 cut(s) 524
Hpy99I CGWCG 1 cut(s) 83
HpyF3I CTNAG 1 cut(s) 533
Hsp92II CATG 2 cut(s) 409, 428
Kzo9I GATC 3 cut(s) 252, 256, 402
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 5 cut(s) 11, 294, 310, 483, 513
MaeI CTAG 2 cut(s) 48, 312
MaeIII GTNAC 1 cut(s) 508
MalI GATC 3 cut(s) 254, 258, 404
MboI GATC 3 cut(s) 252, 256, 402
MboII GAAGA 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 534
MluCI AATT 2 cut(s) 186, 395
MnlI CCTC 1 cut(s) 266
MspI CCGG 1 cut(s) 281
Mva1269I GAATGC 1 cut(s) 373
NdeII GATC 3 cut(s) 252, 256, 402
NlaIII CATG 2 cut(s) 409, 428
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 508
PagI TCATGA 2 cut(s) 405, 424
PctI GAATGC 1 cut(s) 373
PfeI GAWTC 2 cut(s) 226, 428
PflMI CCANNNNNTGG 1 cut(s) 177
PspN4I GGNNCC 1 cut(s) 142
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 523
RsaNI GTAC 1 cut(s) 522
Sau3AI GATC 3 cut(s) 252, 256, 402
Sau96I GGNCC 1 cut(s) 141
SduI GDGCHC 1 cut(s) 534
SetI ASST 3 cut(s) 43, 106, 264
SinI GGWCC 1 cut(s) 141
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 2 cut(s) 186, 395
SsiI CCGC 1 cut(s) 72
SspMI CTAG 2 cut(s) 48, 312
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 3 cut(s) 114, 255, 543
TasI AATT 2 cut(s) 186, 395
TfiI GAWTC 2 cut(s) 226, 428
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 3 cut(s) 252, 413, 441
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 141
XspI CTAG 2 cut(s) 48, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.