Rw2G049110

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000139
Physical Location & Seq
Reverse (-)
76604966 .. 76607717
2752 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049110.1

Sequence Viewer

Length: 1179 bp
ATGACGAACAAGAAGAAGATCAAGCGCGTTGTCAAGCTCCCTGAAGACATTATTGTGGAAATTCTGTTAAAGTTGCCCTTCAAATATTTGATCCAATGTAGTTGCGTTTCAAAAAAATGGCGTTCTTTAATATTATTTGACCCCCAGTTCTCCAAACCCTACTACAAAGTAGCATCCGAGCAGAGAAGTCTTGGTCAATCACTACTCTGTGTTTCCAGGCGAAGTAAATTTCCGTTAAAATGGTTTGAAATACCAGTCTACACTAGTAATCCAAAATTTCAATCCTTAGAGGTCTTGGCTGGTGACCATGTACCTAATTCCTTTCTTTCCTCCCCACTCAAGGAAAAAAAATATGGTTCTTTACAGCTACTGGGATCTTGCAATGGTTTAGTATGTTTAGGTGAATTGTCTGCCTCCGAAAGACATTATAAAAACGTGTGTATCTGGAACCCTTCAACCGGATTCATCCGCAAATTGCCTGTATGGGAGAGGAAACCACAAAGTTTGCTGGATGGAGTGATAGCTTTTGCTAGTAGTGGTTTTGGTTATGTTTCCGCCACCGACGACTACAAATATGTTGCTTTAGCTAATGATAACGATTGCTCCACAAACACTATCAAGGGAACCAAGGCTGACATCTTCTCGTTGAGAACCAAGTCTTGGAAAAGAATTGAAGTCCCTCCCATCTTGTGCTATTACAACGAGCAATCGGGGATTCTATCAAATGAAGCACTCCATTGGATCACCTTGAATGGAGTGGATATCGAGATGGAGACAACTATCACCGCTTTTGATTTGGGAAAGGAGGAGTTCCGGCAAATGCCATTGCCTGTTTCTATAAACACTAGTTATGGCCGAAACAGAATGAGAGTTTTGGTTCTTTTAGGAGAATGCCTTTGTGTTTGGCATTCTAACAGATCTGATATTCAATTATGGGTCATGAGAGAGTATAATGTTCATGAATCTTGGAACTTGCTCTATTATTTTCGGACAGATGATTTGCCTGTGAATGTTGCGAATGTGAGACTAAAACCAGTTTTCGTGACAGAAAGTGGTACACTTGTGCTCAAAGTGTTCGATAAGAATGAGTTTTTAATCAGAATTGAATGCCACAAAAAAAAGAAGCCGGTTTGCAGCGACCAATATAGATTTGAGGAATTGGACATAGGTTCAATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

392

Amino Acids

45.13

Weight (kDa)

9.03

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 44 3.6e-11 F-box domain
F-box-like PF12937 12 - 44 2.2e-07 F-box-like
FBA_3 PF08268 117 - 360 4.7e-16 F-box associated beta propeller domain
FBA_1 PF07734 124 - 362 1.8e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 429
AccB7I CCANNNNNTGG 1 cut(s) 660
AccI GTMKAC 1 cut(s) 258
AccII CGCG 1 cut(s) 27
AciI CCGC 3 cut(s) 469, 555, 786
AclWI GGATC 3 cut(s) 85, 382, 749
AcoI YGGCCR 1 cut(s) 853
AcsI RAATTY 3 cut(s) 60, 227, 275
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 312, 1057
AfiI CCNNNNNNNGG 3 cut(s) 340, 458, 660
AflIII ACRYGT 1 cut(s) 435
AhlI ACTAGT 2 cut(s) 263, 845
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 643, 675
AluBI AGCT 4 cut(s) 37, 367, 524, 587
AluI AGCT 4 cut(s) 37, 367, 524, 587
Alw21I GWGCWC 1 cut(s) 1068
Alw26I GTCTC 2 cut(s) 767, 1018
AlwI GGATC 3 cut(s) 85, 382, 749
AlwNI CAGNNNCTG 1 cut(s) 370
AoxI GGCC 1 cut(s) 853
ApeKI GCWGC 1 cut(s) 1134
ApoI RAATTY 3 cut(s) 60, 227, 275
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
AspLEI GCGC 1 cut(s) 27
AsuHPI GGTGA 4 cut(s) 314, 413, 736, 775
BaeI ACNNNNGTAYC 4 cut(s) 424, 457, 1047, 1080
BbsI GAAGAC 1 cut(s) 51
Bbv12I GWGCWC 1 cut(s) 1068
BbvI GCAGC 1 cut(s) 1146
BccI CCATC 3 cut(s) 506, 692, 763
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 767, 1018
BcuI ACTAGT 2 cut(s) 263, 845
BfaI CTAG 3 cut(s) 264, 531, 846
BglII AGATCT 1 cut(s) 917
BisI GCNGC 1 cut(s) 1135
BlsI GCNGC 1 cut(s) 1136
Bme1390I CCNGG 1 cut(s) 217
BmiI GGNNCC 2 cut(s) 449, 625
BmrFI CCNGG 1 cut(s) 217
BmrI ACTGGG 2 cut(s) 139, 380
BmsI GCATC 1 cut(s) 182
BmuI ACTGGG 2 cut(s) 139, 380
BpiI GAAGAC 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 627
BsaWI WCCGGW 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 587, 617
Bsc4I CCNNNNNNNGG 3 cut(s) 340, 458, 660
Bse118I RCCGGY 1 cut(s) 1126
Bse1I ACTGG 4 cut(s) 145, 254, 375, 1034
Bse3DI GCAATG 2 cut(s) 388, 824
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 3 cut(s) 173, 465, 517
BseLI CCNNNNNNNGG 3 cut(s) 340, 458, 660
BseMI GCAATG 2 cut(s) 388, 824
BseNI ACTGG 4 cut(s) 145, 254, 375, 1034
BseRI GAGGAG 1 cut(s) 821
BseXI GCAGC 1 cut(s) 1146
Bsh1236I CGCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 855
BsiHKAI GWGCWC 1 cut(s) 1068
BsiSI CCGG 3 cut(s) 459, 814, 1127
BslFI GGGAC 1 cut(s) 662
BslI CCNNNNNNNGG 3 cut(s) 340, 458, 660
BsmAI GTCTC 2 cut(s) 767, 1018
BsmFI GGGAC 1 cut(s) 662
BsmI GAATGC 3 cut(s) 896, 907, 1112
BsnI GGCC 1 cut(s) 855
Bsp1286I GDGCHC 1 cut(s) 1068
Bsp143I GATC 5 cut(s) 18, 90, 374, 741, 917
BspACI CCGC 3 cut(s) 469, 555, 786
BspANI GGCC 1 cut(s) 855
BspFNI CGCG 1 cut(s) 27
BspHI TCATGA 2 cut(s) 939, 958
BspLI GGNNCC 2 cut(s) 449, 625
BspPI GGATC 3 cut(s) 85, 382, 749
BsrDI GCAATG 2 cut(s) 388, 824
BsrFI RCCGGY 1 cut(s) 1126
BsrI ACTGG 4 cut(s) 145, 254, 375, 1034
BssAI RCCGGY 1 cut(s) 1126
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 5 cut(s) 18, 90, 374, 741, 917
BssT1I CCWWGG 1 cut(s) 627
Bst2UI CCWGG 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 286
BstEII GGTNACC 1 cut(s) 302
BstF5I GGATG 3 cut(s) 173, 465, 517
BstFNI CGCG 1 cut(s) 27
BstHHI GCGC 1 cut(s) 27
BstKTI GATC 5 cut(s) 21, 93, 377, 744, 920
BstMAI GTCTC 2 cut(s) 767, 1018
BstMBI GATC 5 cut(s) 18, 90, 374, 741, 917
BstNI CCWGG 1 cut(s) 217
BstPI GGTNACC 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 215
BstUI CGCG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 1146
BstV2I GAAGAC 1 cut(s) 51
BstX2I RGATCY 2 cut(s) 374, 917
BstYI RGATCY 2 cut(s) 374, 917
BsuRI GGCC 1 cut(s) 855
BtsCI GGATG 3 cut(s) 173, 465, 517
CaiI CAGNNNCTG 1 cut(s) 370
CciI TCATGA 2 cut(s) 939, 958
CfoI GCGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 1126
Csp6I GTAC 2 cut(s) 311, 1056
CspCI CAANNNNNGTGG 2 cut(s) 486, 521
CviAII CATG 3 cut(s) 308, 940, 959
CviJI RGCY 8 cut(s) 37, 299, 367, 524, 587, 632, 855, 1126
CviKI_1 RGCY 8 cut(s) 37, 299, 367, 524, 587, 632, 855, 1126
CviQI GTAC 2 cut(s) 311, 1056
DdeI CTNAG 1 cut(s) 286
DpnI GATC 5 cut(s) 20, 92, 376, 743, 919
DpnII GATC 5 cut(s) 18, 90, 374, 741, 917
EaeI YGGCCR 1 cut(s) 853
EciI GGCGGA 1 cut(s) 544
Eco130I CCWWGG 1 cut(s) 627
Eco32I GATATC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 63
Eco91I GGTNACC 1 cut(s) 302
EcoO65I GGTNACC 1 cut(s) 302
EcoRII CCWGG 1 cut(s) 215
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 3 cut(s) 311, 943, 962
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FaqI GGGAC 1 cut(s) 662
FatI CATG 3 cut(s) 307, 939, 958
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 1 cut(s) 1135
FokI GGATG 3 cut(s) 160, 452, 524
Fsp4HI GCNGC 1 cut(s) 1135
FspBI CTAG 3 cut(s) 264, 531, 846
GlaI GCGC 1 cut(s) 26
GluI GCNGC 1 cut(s) 1135
HaeIII GGCC 1 cut(s) 855
HapII CCGG 3 cut(s) 459, 814, 1127
HhaI GCGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 311, 943, 962
Hin6I GCGC 1 cut(s) 25
HinP1I GCGC 1 cut(s) 25
HinfI GANTC 3 cut(s) 462, 715, 962
HpaII CCGG 3 cut(s) 459, 814, 1127
HphI GGTGA 4 cut(s) 314, 413, 736, 775
Hpy166II GTNNAC 2 cut(s) 259, 1058
Hpy188I TCNGA 5 cut(s) 178, 418, 922, 990, 1100
Hpy188III TCNNGA 5 cut(s) 445, 766, 940, 959, 1042
Hpy8I GTNNAC 2 cut(s) 259, 1058
Hpy99I CGWCG 1 cut(s) 566
HpyAV CCTTC 2 cut(s) 88, 462
HpyCH4IV ACGT 1 cut(s) 435
HpyCH4V TGCA 2 cut(s) 381, 1134
HpyF3I CTNAG 1 cut(s) 286
HpySE526I ACGT 1 cut(s) 435
Hsp92II CATG 3 cut(s) 311, 943, 962
HspAI GCGC 1 cut(s) 25
Kzo9I GATC 5 cut(s) 18, 90, 374, 741, 917
LmnI GCTCC 2 cut(s) 42, 608
Lsp1109I GCAGC 1 cut(s) 1146
LweI GCATC 1 cut(s) 182
MaeI CTAG 3 cut(s) 264, 531, 846
MaeII ACGT 1 cut(s) 435
MaeIII GTNAC 2 cut(s) 302, 1042
MalI GATC 5 cut(s) 20, 92, 376, 743, 919
MboI GATC 5 cut(s) 18, 90, 374, 741, 917
MboII GAAGA 4 cut(s) 25, 28, 56, 631
MflI RGATCY 2 cut(s) 374, 917
MhlI GDGCHC 1 cut(s) 1068
MnlI CCTC 7 cut(s) 283, 340, 424, 483, 690, 799, 1147
MseI TTAA 4 cut(s) 68, 128, 236, 1094
MslI CAYNNNNRTG 1 cut(s) 53
MspI CCGG 3 cut(s) 459, 814, 1127
MspR9I CCNGG 1 cut(s) 217
Mva1269I GAATGC 3 cut(s) 896, 907, 1112
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 27
NdeII GATC 5 cut(s) 18, 90, 374, 741, 917
NlaIII CATG 3 cut(s) 311, 943, 962
NlaIV GGNNCC 2 cut(s) 449, 625
NmuCI GTSAC 2 cut(s) 302, 1042
PagI TCATGA 2 cut(s) 939, 958
PctI GAATGC 3 cut(s) 896, 907, 1112
PfeI GAWTC 3 cut(s) 462, 715, 962
PflMI CCANNNNNTGG 1 cut(s) 660
PkrI GCNGC 1 cut(s) 1136
PsiI TTATAA 1 cut(s) 429
Psp6I CCWGG 1 cut(s) 215
PspEI GGTNACC 1 cut(s) 302
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 449, 625
PstNI CAGNNNCTG 1 cut(s) 370
PsuI RGATCY 2 cut(s) 374, 917
RsaI GTAC 2 cut(s) 312, 1057
RsaNI GTAC 2 cut(s) 311, 1056
RseI CAYNNNNRTG 1 cut(s) 53
SaqAI TTAA 4 cut(s) 68, 128, 236, 1094
SatI GCNGC 1 cut(s) 1135
Sau3AI GATC 5 cut(s) 18, 90, 374, 741, 917
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 1 cut(s) 1068
SfaNI GCATC 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
SpeI ACTAGT 2 cut(s) 263, 845
SsiI CCGC 3 cut(s) 469, 555, 786
SspI AATATT 2 cut(s) 86, 132
SspMI CTAG 3 cut(s) 264, 531, 846
StyD4I CCNGG 1 cut(s) 215
StyI CCWWGG 1 cut(s) 627
TaiI ACGT 1 cut(s) 438
TaqI TCGA 2 cut(s) 765, 1077
TfiI GAWTC 3 cut(s) 462, 715, 962
Tru1I TTAA 4 cut(s) 68, 128, 236, 1094
Tru9I TTAA 4 cut(s) 68, 128, 236, 1094
TseFI GTSAC 2 cut(s) 302, 1042
TseI GCWGC 1 cut(s) 1134
Tsp45I GTSAC 2 cut(s) 302, 1042
TspDTI ATGAA 4 cut(s) 454, 741, 947, 975
TspGWI ACGGA 1 cut(s) 222
Van91I CCANNNNNTGG 1 cut(s) 660
XapI RAATTY 3 cut(s) 60, 227, 275
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 3 cut(s) 264, 531, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.