FvH4_3g42301

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000139
Physical Location & Seq
Forward (+)
35299363 .. 35301908
2546 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g42301.t1

Sequence Viewer

Length: 948 bp
ATGACGTCGAAGGAGGCGGAGGTGGTGGTTTTCGATCTCCCTGAAGATGTTGTAGTCAACATTTTGTGCCGGTTGCCGGTCAAATCTCTGATCAGGTTCAGCTGTGTCTCGAAACGGTGGCGTTCCATTATCATCTCTGACTCTCAGTTTGCCAAATCCACTTTTCAGCGTGCATCTCAGAGTAAAATCCTACGTCAACGACTCCTCTTCTCCAACTATCCTTGTTATCGAAATTCTTCTCGATTTCAATGTTTAGGAGGCTTGGACATGCCTTGTTTCGGAGGAAACTCATCGGTCCAAAGTCTCACCCTCCCGCAAGCGTTCATACCAGAAAGGGTAATGCTGGCCTCATGCAATGGTTTGGTGGTTCTAGTTGAAAGATTGCATGACCTTTTCACGAATAACTTGTCGTTTCAAATTAATGGAGCATGTCATTGGGTCAGTAATGTGGTTTGGGAACCAGCTATTCATGCTTTCGATTTGGCAGAGGAGGAGTTCCGGCAATTGCCGTTGCCACTTGCTTTGGTGTCAGAATTATTACAAGATGGCTCGTATATGAGACAGATAGCTACTCAGGTTCTCAGAGAAGGATGCCTTTGTGTATCGTCTCGGAACTGGCATGGAAACGTTAAATTTTGGGAGATGAAAGAGTATGGGGTCCCTGAATCTTGGGTTAAACTGTTTCATTTCAGTGTGCAAGATTTACCAGATGTTTTTGATTCAACATATAGTTGGATTCCTGTTTTGGTTACAGAAGGCGGTACAGTTGTGATCAACCTCTGTAACAAGAATTACTATGGCGGCAGCGAGTTGGTTAGAATTGAATGTCATAGAGAAGAGAATGAAGGGATAACCAACTATCTTGTACCAACAATCTCCCCCTTTGGCATTCCTGATCAAAACACACCTTCAAAGGTTGTGCTGGTTCTAAACACAAGAATAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

316

Amino Acids

35.76

Weight (kDa)

5.92

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 12 - 47 9.8e-13 F-box domain
F-box-like PF12937 12 - 48 2.7e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AciI CCGC 4 cut(s) 17, 314, 759, 801
AclI AACGTT 1 cut(s) 627
AcsI RAATTY 2 cut(s) 232, 632
AcuI CTGAAG 1 cut(s) 63
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 763, 867
AfiI CCNNNNNNNGG 2 cut(s) 76, 278
AgsI TTSAA 6 cut(s) 248, 377, 416, 723, 824, 912
AluBI AGCT 3 cut(s) 102, 464, 569
AluI AGCT 3 cut(s) 102, 464, 569
Alw26I GTCTC 4 cut(s) 112, 308, 553, 612
AoxI GGCC 1 cut(s) 345
ApeKI GCWGC 1 cut(s) 804
ApoI RAATTY 2 cut(s) 232, 632
ArsI GACNNNNNNTTYG 4 cut(s) 131, 163, 392, 424
AseI ATTAAT 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 235
AspS9I GGNCC 2 cut(s) 295, 658
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 2 cut(s) 295, 658
BaeI ACNNNNGTAYC 2 cut(s) 753, 786
BbvI GCAGC 1 cut(s) 816
BccI CCATC 1 cut(s) 539
BceAI ACGGC 1 cut(s) 493
BclI TGATCA 3 cut(s) 90, 771, 895
BcoDI GTCTC 4 cut(s) 112, 308, 553, 612
BfaI CTAG 1 cut(s) 371
BisI GCNGC 2 cut(s) 802, 805
BlsI GCNGC 2 cut(s) 803, 806
Bme18I GGWCC 2 cut(s) 295, 658
BmgT120I GGNCC 2 cut(s) 295, 658
BmiI GGNNCC 3 cut(s) 459, 659, 660
BmsI GCATC 2 cut(s) 182, 581
BsaHI GRCGYC 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 76, 278
Bse118I RCCGGY 2 cut(s) 69, 76
Bse1I ACTGG 1 cut(s) 620
Bse3DI GCAATG 1 cut(s) 361
BseGI GGATG 1 cut(s) 596
BseLI CCNNNNNNNGG 2 cut(s) 76, 278
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 4 cut(s) 158, 191, 587, 595
BseNI ACTGG 1 cut(s) 620
BseRI GAGGAG 3 cut(s) 194, 503, 506
BseXI GCAGC 1 cut(s) 816
BshFI GGCC 1 cut(s) 347
BsiSI CCGG 3 cut(s) 70, 77, 499
BslFI GGGAC 1 cut(s) 644
BslI CCNNNNNNNGG 2 cut(s) 76, 278
BsmAI GTCTC 4 cut(s) 112, 308, 553, 612
BsmBI CGTCTC 1 cut(s) 612
BsmFI GGGAC 1 cut(s) 644
BsmI GAATGC 1 cut(s) 888
BsnI GGCC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 34, 90, 771, 895
BspACI CCGC 4 cut(s) 17, 314, 759, 801
BspANI GGCC 1 cut(s) 347
BspCNI CTCAG 4 cut(s) 157, 190, 586, 594
BspLI GGNNCC 3 cut(s) 459, 659, 660
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 2 cut(s) 69, 76
BsrI ACTGG 1 cut(s) 620
BssAI RCCGGY 2 cut(s) 69, 76
BssMI GATC 4 cut(s) 34, 90, 771, 895
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 3 cut(s) 117, 681, 766
Bst6I CTCTTC 2 cut(s) 212, 831
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 3 cut(s) 171, 318, 345
BstDEI CTNAG 4 cut(s) 144, 177, 573, 581
BstF5I GGATG 1 cut(s) 596
BstKTI GATC 4 cut(s) 37, 93, 774, 898
BstMAI GTCTC 4 cut(s) 112, 308, 553, 612
BstMBI GATC 4 cut(s) 34, 90, 771, 895
BstMWI GCNNNNNNNGC 1 cut(s) 470
BstNSI RCATGY 2 cut(s) 271, 432
BstV1I GCAGC 1 cut(s) 816
BsuRI GGCC 1 cut(s) 347
BtsCI GGATG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 697
Cac8I GCNNGC 3 cut(s) 171, 318, 345
Cfr10I RCCGGY 2 cut(s) 69, 76
Cfr13I GGNCC 2 cut(s) 295, 658
Csp6I GTAC 2 cut(s) 762, 866
CspCI CAANNNNNGTGG 2 cut(s) 504, 539
CviAII CATG 6 cut(s) 268, 351, 386, 429, 470, 620
CviJI RGCY 6 cut(s) 102, 261, 347, 464, 549, 569
CviKI_1 RGCY 6 cut(s) 102, 261, 347, 464, 549, 569
CviQI GTAC 2 cut(s) 762, 866
DdeI CTNAG 4 cut(s) 144, 177, 573, 581
DpnI GATC 4 cut(s) 36, 92, 773, 897
DpnII GATC 4 cut(s) 34, 90, 771, 895
Eam1104I CTCTTC 2 cut(s) 212, 831
EarI CTCTTC 2 cut(s) 212, 831
EciI GGCGGA 1 cut(s) 32
Eco47I GGWCC 2 cut(s) 295, 658
Eco57I CTGAAG 1 cut(s) 63
EcoO109I RGGNCCY 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 612
FaeI CATG 6 cut(s) 271, 354, 389, 432, 473, 623
FalI AAGNNNNNCTT 2 cut(s) 579, 611
FaqI GGGAC 1 cut(s) 644
FatI CATG 6 cut(s) 267, 350, 385, 428, 469, 619
FauI CCCGC 1 cut(s) 321
FbaI TGATCA 3 cut(s) 90, 771, 895
Fnu4HI GCNGC 2 cut(s) 802, 805
FokI GGATG 1 cut(s) 603
Fsp4HI GCNGC 2 cut(s) 802, 805
FspBI CTAG 1 cut(s) 371
GluI GCNGC 2 cut(s) 802, 805
HaeIII GGCC 1 cut(s) 347
HapII CCGG 3 cut(s) 70, 77, 499
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 6 cut(s) 271, 354, 389, 432, 473, 623
HincII GTYRAC 2 cut(s) 58, 197
HindII GTYRAC 2 cut(s) 58, 197
HinfI GANTC 5 cut(s) 140, 201, 665, 719, 736
HpaII CCGG 3 cut(s) 70, 77, 499
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 58, 197
Hpy188I TCNGA 7 cut(s) 90, 139, 180, 281, 532, 584, 612
Hpy188III TCNNGA 4 cut(s) 109, 240, 397, 893
Hpy8I GTNNAC 2 cut(s) 58, 197
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 5 cut(s) 4, 581, 749, 839, 918
HpyCH4III ACNGT 3 cut(s) 117, 681, 766
HpyCH4IV ACGT 3 cut(s) 5, 193, 627
HpyCH4V TGCA 4 cut(s) 173, 354, 385, 697
HpyF10VI GCNNNNNNNGC 1 cut(s) 470
HpyF3I CTNAG 4 cut(s) 144, 177, 573, 581
HpySE526I ACGT 3 cut(s) 5, 193, 627
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 6 cut(s) 271, 354, 389, 432, 473, 623
KflI GGGWCCC 1 cut(s) 658
Ksp22I TGATCA 3 cut(s) 90, 771, 895
Kzo9I GATC 4 cut(s) 34, 90, 771, 895
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 816
LweI GCATC 2 cut(s) 182, 581
MaeI CTAG 1 cut(s) 371
MaeII ACGT 3 cut(s) 5, 193, 627
MaeIII GTNAC 2 cut(s) 748, 782
MalI GATC 4 cut(s) 36, 92, 773, 897
MboI GATC 4 cut(s) 34, 90, 771, 895
MboII GAAGA 4 cut(s) 56, 199, 228, 848
MfeI CAATTG 1 cut(s) 503
MluCI AATT 7 cut(s) 232, 417, 503, 533, 632, 790, 819
MlyI GAGTC 2 cut(s) 134, 195
MmeI TCCRAC 2 cut(s) 237, 713
MroXI GAANNNNTTC 1 cut(s) 235
MseI TTAA 3 cut(s) 420, 630, 675
MslI CAYNNNNRTG 1 cut(s) 690
MspA1I CMGCKG 1 cut(s) 102
MspI CCGG 3 cut(s) 70, 77, 499
MunI CAATTG 1 cut(s) 503
Mva1269I GAATGC 1 cut(s) 888
MwoI GCNNNNNNNGC 1 cut(s) 470
NdeII GATC 4 cut(s) 34, 90, 771, 895
NlaIII CATG 6 cut(s) 271, 354, 389, 432, 473, 623
NlaIV GGNNCC 3 cut(s) 459, 659, 660
NspI RCATGY 2 cut(s) 271, 432
PctI GAATGC 1 cut(s) 888
PdmI GAANNNNTTC 1 cut(s) 235
PfeI GAWTC 3 cut(s) 665, 719, 736
PkrI GCNGC 2 cut(s) 803, 806
PleI GAGTC 2 cut(s) 134, 195
PpsI GAGTC 2 cut(s) 134, 195
PpuMI RGGWCCY 1 cut(s) 658
PshBI ATTAAT 1 cut(s) 420
Psp1406I AACGTT 1 cut(s) 627
Psp5II RGGWCCY 1 cut(s) 658
PspN4I GGNNCC 3 cut(s) 459, 659, 660
PspPI GGNCC 2 cut(s) 295, 658
PspPPI RGGWCCY 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 763, 867
RsaNI GTAC 2 cut(s) 762, 866
RseI CAYNNNNRTG 1 cut(s) 690
SaqAI TTAA 3 cut(s) 420, 630, 675
SatI GCNGC 2 cut(s) 802, 805
Sau3AI GATC 4 cut(s) 34, 90, 771, 895
Sau96I GGNCC 2 cut(s) 295, 658
SchI GAGTC 2 cut(s) 134, 195
SfaNI GCATC 2 cut(s) 182, 581
SinI GGWCC 2 cut(s) 295, 658
SmiMI CAYNNNNRTG 1 cut(s) 690
Sse9I AATT 7 cut(s) 232, 417, 503, 533, 632, 790, 819
SsiI CCGC 4 cut(s) 17, 314, 759, 801
SspMI CTAG 1 cut(s) 371
TaaI ACNGT 3 cut(s) 117, 681, 766
TaiI ACGT 3 cut(s) 8, 196, 630
TaqI TCGA 6 cut(s) 8, 33, 110, 229, 241, 477
TaqII GACCGA 1 cut(s) 283
TasI AATT 7 cut(s) 232, 417, 503, 533, 632, 790, 819
TauI GCSGC 1 cut(s) 804
TfiI GAWTC 3 cut(s) 665, 719, 736
Tru1I TTAA 3 cut(s) 420, 630, 675
Tru9I TTAA 3 cut(s) 420, 630, 675
TscAI CASTG 1 cut(s) 697
TseI GCWGC 1 cut(s) 804
TspDTI ATGAA 5 cut(s) 313, 458, 659, 674, 858
TspRI CASTG 1 cut(s) 697
VpaK11BI GGWCC 2 cut(s) 295, 658
VspI ATTAAT 1 cut(s) 420
XapI RAATTY 2 cut(s) 232, 632
XceI RCATGY 2 cut(s) 271, 432
XmnI GAANNNNTTC 1 cut(s) 235
XspI CTAG 1 cut(s) 371
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.