RchiOBHm_Chr7g0226061

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0000139
Physical Location & Seq
Reverse (-)
49106254 .. 49107287
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20247

Sequence Viewer

Length: 195 bp
ATGTTGACGAAGGAGGAGCAGCTTGATAATGATGTCCACCTCCCTGAACATGTTGTGCTCAACATTCTCTGCCGGCTGCCATTCAAGTCCTTGATCCGCTTCACTTGTGTCTCCAAACGCTGGCGTTCTCTCATCATTTCTGACCCCCAATTTGGCAACTCCCATTTCCGACTAGCAGCATCTCAGCTCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

64

Amino Acids

7.52

Weight (kDa)

9.38

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 13 - 48 2.3e-12 F-box domain
F-box-like PF12937 13 - 48 1.9e-09 F-box-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 120
AciI CCGC 1 cut(s) 97
AclWI GGATC 1 cut(s) 88
AfiI CCNNNNNNNGG 2 cut(s) 120, 152
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 1 cut(s) 85
AluBI AGCT 2 cut(s) 22, 187
AluI AGCT 2 cut(s) 22, 187
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 1 cut(s) 88
ApeKI GCWGC 3 cut(s) 19, 76, 176
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 3 cut(s) 31, 63, 188
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 173
BisI GCNGC 3 cut(s) 20, 77, 177
BlsI GCNGC 3 cut(s) 21, 78, 178
BmsI GCATC 1 cut(s) 188
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 152
Bse118I RCCGGY 1 cut(s) 72
BseLI CCNNNNNNNGG 2 cut(s) 120, 152
BseRI GAGGAG 1 cut(s) 29
BseXI GCAGC 3 cut(s) 31, 63, 188
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 1 cut(s) 73
BslI CCNNNNNNNGG 2 cut(s) 120, 152
BsmAI GTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 93
BspACI CCGC 1 cut(s) 97
BspPI GGATC 1 cut(s) 88
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssMI GATC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 74, 122
BstDEI CTNAG 1 cut(s) 183
BstKTI GATC 1 cut(s) 96
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 1 cut(s) 93
BstNSI RCATGY 1 cut(s) 53
BstV1I GCAGC 3 cut(s) 31, 63, 188
Cac8I GCNNGC 2 cut(s) 74, 122
Cfr10I RCCGGY 1 cut(s) 72
CviAII CATG 1 cut(s) 50
CviJI RGCY 3 cut(s) 22, 76, 187
CviKI_1 RGCY 3 cut(s) 22, 76, 187
DdeI CTNAG 1 cut(s) 183
DpnI GATC 1 cut(s) 95
DpnII GATC 1 cut(s) 93
FaeI CATG 1 cut(s) 53
FaiI YATR 1 cut(s) 51
FatI CATG 1 cut(s) 49
Fnu4HI GCNGC 3 cut(s) 20, 77, 177
Fsp4HI GCNGC 3 cut(s) 20, 77, 177
FspBI CTAG 1 cut(s) 173
GluI GCNGC 3 cut(s) 20, 77, 177
HapII CCGG 1 cut(s) 73
Hin1II CATG 1 cut(s) 53
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 6, 37
Hpy188I TCNGA 2 cut(s) 142, 170
Hpy8I GTNNAC 2 cut(s) 6, 37
HpyAV CCTTC 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 183
Hsp92II CATG 1 cut(s) 53
KroI GCCGGC 1 cut(s) 72
KroNI GCCGGC 1 cut(s) 74
Kzo9I GATC 1 cut(s) 93
LmnI GCTCC 2 cut(s) 16, 192
LpnPI CCDG 3 cut(s) 57, 86, 106
Lsp1109I GCAGC 3 cut(s) 31, 63, 188
LweI GCATC 1 cut(s) 188
MaeI CTAG 1 cut(s) 173
MalI GATC 1 cut(s) 95
MboI GATC 1 cut(s) 93
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 193
MnlI CCTC 2 cut(s) 7, 50
MroNI GCCGGC 1 cut(s) 72
MspI CCGG 1 cut(s) 73
NaeI GCCGGC 1 cut(s) 74
NdeII GATC 1 cut(s) 93
NgoMIV GCCGGC 1 cut(s) 72
NlaIII CATG 1 cut(s) 53
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PdiI GCCGGC 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 120
PkrI GCNGC 3 cut(s) 21, 78, 178
PscI ACATGT 1 cut(s) 49
SatI GCNGC 3 cut(s) 20, 77, 177
Sau3AI GATC 1 cut(s) 93
SduI GDGCHC 1 cut(s) 60
SetI ASST 3 cut(s) 24, 42, 189
SfaNI GCATC 1 cut(s) 188
SgeI CNNG 9 cut(s) 35, 56, 62, 85, 97, 103, 117, 133, 185
Sse9I AATT 1 cut(s) 149
SsiI CCGC 1 cut(s) 97
SspMI CTAG 1 cut(s) 173
TasI AATT 1 cut(s) 149
TseI GCWGC 3 cut(s) 19, 76, 176
TspGWI ACGGA 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 120
XceI RCATGY 1 cut(s) 53
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.