Rmu_sc0007791.1_g000006

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007791.1
OG0000139
Physical Location & Seq
Forward (+)
36717 .. 37553
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007791.1_g000006.1.cds

Sequence Viewer

Length: 837 bp
atgtcgacctgcatcgatctccctaaagatattatagttaagattctgtgtcgtttgtcagtcaagtctttgatccggttcacttgtgtgtcgaaaaggtggcgttatgttgtcatttctgatcctcagtttggaaaatcccattaccaacttgcttctcagcagagaaccctcagtagaaaagttctcctcacctcctaccctacagtcagagagccaggtccgacgcccaatgctggttgtgattacagtgtggatttacccctccgatttcaacccttagaggttaagttttcagtcaaaaatttcacattcccatctgaggagaatggtgatatggaagaaatgggctcctgcaatggtttggtacttgtaggcaaacgttttgttggtggctacgaaaacttgtcgatctggaacccatcgactggattcttccgcaaggttcctagtccaagtttccaggtgaagtcaatacaatcaaccgatgaagagtacctgtactttgtaaattatggttttggtcatgagttggccagtgacgacgacaaacttgttttcatattatgcgccctctgtcatctggtggaagtccatatcttatctctgagagccaacattgggaaagctattacagatcctcacttgtcaagggtgggctgggacagtggacggggggactttttcaaatggagcaatttagggtcattcacagcagaattgagagttctgacccagttatctatgcgtttgacttggcagaggaggagtttcggcaagtaccattgccgcctgttttgtgtcaaaatgacgaagacaggaatccgacccagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

278

Amino Acids

31.74

Weight (kDa)

9.35

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 17
AccB7I CCANNNNNTGG 1 cut(s) 428
AccI GTMKAC 1 cut(s) 5
AciI CCGC 2 cut(s) 439, 790
AclI AACGTT 1 cut(s) 382
AclWI GGATC 3 cut(s) 67, 116, 632
AcoI YGGCCR 1 cut(s) 534
AcsI RAATTY 1 cut(s) 304
AcyI GRCGYC 1 cut(s) 227
AfaI GTAC 4 cut(s) 369, 497, 503, 782
AfiI CCNNNNNNNGG 5 cut(s) 131, 236, 322, 428, 621
AgsI TTSAA 2 cut(s) 275, 688
AjnI CCWGG 2 cut(s) 217, 462
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
AlwI GGATC 3 cut(s) 67, 116, 632
AoxI GGCC 1 cut(s) 534
ApoI RAATTY 1 cut(s) 304
AspLEI GCGC 1 cut(s) 572
AspS9I GGNCC 1 cut(s) 221
AsuHPI GGTGA 3 cut(s) 184, 344, 478
AvaII GGWCC 1 cut(s) 221
BalI TGGCCA 1 cut(s) 536
BanII GRGCYC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 821
BccI CCATC 2 cut(s) 325, 430
BciT130I CCWGG 2 cut(s) 219, 464
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 1 cut(s) 204
BfuAI ACCTGC 1 cut(s) 17
BisI GCNGC 1 cut(s) 790
BlsI GCNGC 1 cut(s) 791
Bme1390I CCNGG 2 cut(s) 219, 464
Bme18I GGWCC 1 cut(s) 221
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 3 cut(s) 352, 419, 447
BmrFI CCNGG 2 cut(s) 219, 464
BmrI ACTGGG 1 cut(s) 730
BmsI GCATC 1 cut(s) 21
BmuI ACTGGG 1 cut(s) 730
BpiI GAAGAC 1 cut(s) 821
Bsa29I ATCGAT 1 cut(s) 15
BsaHI GRCGYC 1 cut(s) 227
BsaWI WCCGGW 1 cut(s) 75
Bsc4I CCNNNNNNNGG 5 cut(s) 131, 236, 322, 428, 621
Bse1I ACTGG 3 cut(s) 433, 537, 736
Bse3DI GCAATG 2 cut(s) 364, 784
BseBI CCWGG 2 cut(s) 219, 464
BseCI ATCGAT 1 cut(s) 15
BseLI CCNNNNNNNGG 5 cut(s) 131, 236, 322, 428, 621
BseMI GCAATG 2 cut(s) 364, 784
BseMII CTCAG 5 cut(s) 140, 173, 187, 312, 599
BseNI ACTGG 3 cut(s) 433, 537, 736
BseRI GAGGAG 4 cut(s) 179, 338, 778, 781
BseYI CCCAGC 1 cut(s) 660
BshFI GGCC 1 cut(s) 536
BshVI ATCGAT 1 cut(s) 15
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 2 cut(s) 677, 692
BslI CCNNNNNNNGG 5 cut(s) 131, 236, 322, 428, 621
BsmFI GGGAC 2 cut(s) 677, 692
BsnI GGCC 1 cut(s) 536
Bsp1286I GDGCHC 1 cut(s) 353
Bsp143I GATC 5 cut(s) 16, 72, 121, 411, 637
BspACI CCGC 2 cut(s) 439, 790
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 5 cut(s) 139, 172, 186, 313, 600
BspDI ATCGAT 1 cut(s) 15
BspHI TCATGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 352, 419, 447
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 3 cut(s) 67, 116, 632
BsrDI GCAATG 2 cut(s) 364, 784
BsrI ACTGG 3 cut(s) 433, 537, 736
BssMI GATC 5 cut(s) 16, 72, 121, 411, 637
BssNI GRCGYC 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 219, 464
Bst4CI ACNGT 3 cut(s) 208, 251, 668
Bst6I CTCTTC 1 cut(s) 486
BstACI GRCGYC 1 cut(s) 227
BstDEI CTNAG 6 cut(s) 126, 159, 173, 280, 321, 608
BstHHI GCGC 1 cut(s) 572
BstKTI GATC 5 cut(s) 19, 75, 124, 414, 640
BstMBI GATC 5 cut(s) 16, 72, 121, 411, 637
BstNI CCWGG 2 cut(s) 219, 464
BstSCI CCNGG 2 cut(s) 217, 462
BstSFI CTRYAG 1 cut(s) 204
BstV2I GAAGAC 1 cut(s) 821
BstX2I RGATCY 1 cut(s) 637
BstYI RGATCY 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 15
BsuRI GGCC 1 cut(s) 536
BsuTUI ATCGAT 1 cut(s) 15
BtsIMutI CAGTG 3 cut(s) 256, 544, 673
BveI ACCTGC 1 cut(s) 17
CciI TCATGA 1 cut(s) 526
CfoI GCGC 1 cut(s) 572
Cfr13I GGNCC 1 cut(s) 221
ClaI ATCGAT 1 cut(s) 15
CseI GACGC 1 cut(s) 235
Csp6I GTAC 4 cut(s) 368, 496, 502, 781
CviAII CATG 1 cut(s) 527
CviJI RGCY 7 cut(s) 217, 351, 396, 536, 614, 629, 660
CviKI_1 RGCY 7 cut(s) 217, 351, 396, 536, 614, 629, 660
CviQI GTAC 4 cut(s) 368, 496, 502, 781
DdeI CTNAG 6 cut(s) 126, 159, 173, 280, 321, 608
DpnI GATC 5 cut(s) 18, 74, 123, 413, 639
DpnII GATC 5 cut(s) 16, 72, 121, 411, 637
EaeI YGGCCR 1 cut(s) 534
Eam1104I CTCTTC 1 cut(s) 486
EarI CTCTTC 1 cut(s) 486
Eco24I GRGCYC 1 cut(s) 353
Eco47I GGWCC 1 cut(s) 221
EcoRII CCWGG 2 cut(s) 217, 462
EcoT38I GRGCYC 1 cut(s) 353
FaeI CATG 1 cut(s) 530
FaiI YATR 9 cut(s) 35, 108, 338, 516, 528, 563, 568, 597, 746
FaqI GGGAC 2 cut(s) 677, 692
FatI CATG 1 cut(s) 526
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 790
FriOI GRGCYC 1 cut(s) 353
Fsp4HI GCNGC 1 cut(s) 790
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 571
GluI GCNGC 1 cut(s) 790
GsaI CCCAGC 1 cut(s) 664
HaeIII GGCC 1 cut(s) 536
HapII CCGG 1 cut(s) 76
HgaI GACGC 1 cut(s) 235
HhaI GCGC 1 cut(s) 572
Hin1I GRCGYC 1 cut(s) 227
Hin1II CATG 1 cut(s) 530
Hin6I GCGC 1 cut(s) 570
HinP1I GCGC 1 cut(s) 570
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 3 cut(s) 43, 432, 822
HpaII CCGG 1 cut(s) 76
HphI GGTGA 3 cut(s) 184, 344, 478
Hpy166II GTNNAC 3 cut(s) 6, 81, 671
Hpy188I TCNGA 8 cut(s) 121, 212, 225, 269, 322, 609, 732, 827
Hpy188III TCNNGA 2 cut(s) 415, 527
Hpy8I GTNNAC 3 cut(s) 6, 81, 671
Hpy99I CGWCG 2 cut(s) 229, 548
HpyCH4III ACNGT 3 cut(s) 208, 251, 668
HpyCH4IV ACGT 1 cut(s) 382
HpyCH4V TGCA 2 cut(s) 12, 357
HpyF3I CTNAG 6 cut(s) 126, 159, 173, 280, 321, 608
HpySE526I ACGT 1 cut(s) 382
Hsp92I GRCGYC 1 cut(s) 227
Hsp92II CATG 1 cut(s) 530
HspAI GCGC 1 cut(s) 570
Kzo9I GATC 5 cut(s) 16, 72, 121, 411, 637
LmnI GCTCC 2 cut(s) 356, 693
LweI GCATC 1 cut(s) 21
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 382
MaeIII GTNAC 1 cut(s) 539
MalI GATC 5 cut(s) 18, 74, 123, 413, 639
MboI GATC 5 cut(s) 16, 72, 121, 411, 637
MboII GAAGA 4 cut(s) 353, 427, 503, 826
MflI RGATCY 1 cut(s) 637
MhlI GDGCHC 1 cut(s) 353
MlsI TGGCCA 1 cut(s) 536
MluCI AATT 4 cut(s) 304, 511, 697, 719
MluNI TGGCCA 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 248
Mox20I TGGCCA 1 cut(s) 536
MscI TGGCCA 1 cut(s) 536
MseI TTAA 2 cut(s) 39, 288
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 536
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 2 cut(s) 219, 464
MvaI CCWGG 2 cut(s) 219, 464
NdeII GATC 5 cut(s) 16, 72, 121, 411, 637
NlaIII CATG 1 cut(s) 530
NlaIV GGNNCC 3 cut(s) 352, 419, 447
NmuCI GTSAC 1 cut(s) 539
OliI CACNNNNGTG 1 cut(s) 86
PagI TCATGA 1 cut(s) 526
PfeI GAWTC 3 cut(s) 43, 432, 822
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 1 cut(s) 791
Psp1406I AACGTT 1 cut(s) 382
Psp6I CCWGG 2 cut(s) 217, 462
PspFI CCCAGC 1 cut(s) 660
PspGI CCWGG 2 cut(s) 217, 462
PspN4I GGNNCC 3 cut(s) 352, 419, 447
PspPI GGNCC 1 cut(s) 221
PsuI RGATCY 1 cut(s) 637
RsaI GTAC 4 cut(s) 369, 497, 503, 782
RsaNI GTAC 4 cut(s) 368, 496, 502, 781
RseI CAYNNNNRTG 1 cut(s) 86
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 2 cut(s) 39, 288
SatI GCNGC 1 cut(s) 790
Sau3AI GATC 5 cut(s) 16, 72, 121, 411, 637
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 2 cut(s) 219, 464
SduI GDGCHC 1 cut(s) 353
SfaNI GCATC 1 cut(s) 21
SfcI CTRYAG 1 cut(s) 204
SinI GGWCC 1 cut(s) 221
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 4 cut(s) 304, 511, 697, 719
SsiI CCGC 2 cut(s) 439, 790
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 2 cut(s) 217, 462
TaaI ACNGT 3 cut(s) 208, 251, 668
TaiI ACGT 1 cut(s) 385
TaqI TCGA 5 cut(s) 5, 15, 92, 410, 425
TasI AATT 4 cut(s) 304, 511, 697, 719
TatI WGTACW 1 cut(s) 501
TauI GCSGC 1 cut(s) 792
TfiI GAWTC 3 cut(s) 43, 432, 822
Tru1I TTAA 2 cut(s) 39, 288
Tru9I TTAA 2 cut(s) 39, 288
TscAI CASTG 3 cut(s) 256, 544, 673
TseFI GTSAC 1 cut(s) 539
Tsp45I GTSAC 1 cut(s) 539
TspDTI ATGAA 2 cut(s) 504, 550
TspRI CASTG 3 cut(s) 256, 544, 673
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 221
XapI RAATTY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.