Rorug05G0444000

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000139
Physical Location & Seq
Reverse (-)
61523561 .. 61525560
2000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0444000.1

Sequence Viewer

Length: 525 bp
ATGAGGCAACAGAATCGTTCCAATGAGTGTAATCATCGTGATAAGCAAATTAGAAGTAATGAACAAGATCGCGGTGTGATTGTAAATCAGATGTTCTTTGCTGATCAAAACTCAGATACTAATAGTACAACTGCTATCGTAATGGCAACGAAGAGTGGAAAAACAAAAATGAGGAGAGTTTTACAAGATGATGATGCAGAGAGTCAGAATGCTGGGGAACTAGCAAAGAGAATACCTGATGAACAAGATTTTACTGTTGTTTCTCATATGGACACTGATTGTGAAACTATATCAATAAAGCGAAGACAGGAATTGTTGAAGAGCTTGGATACTTTTCCCAATGCATTCACCTATCCTGATAGGACTTGCTACCCAGTTGCCTCCACAAATTCGAAGGATTTCTATAATCTGATTGATGTGTACCTCGATGCTGTGTTCTTCCCAAAATATGTGAAGGATTTCCAAACTTTCCAACACGAGGGCTGCCATTATGAGCTCCACAATCTTTCTGAAGACATCTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

174

Amino Acids

20.23

Weight (kDa)

5.2

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 523
AccII CGCG 1 cut(s) 72
AciI CCGC 1 cut(s) 72
AcsI RAATTY 1 cut(s) 388
AfaI GTAC 2 cut(s) 127, 422
AfiI CCNNNNNNNGG 1 cut(s) 478
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 2 cut(s) 324, 496
AluI AGCT 2 cut(s) 324, 496
Alw21I GWGCWC 1 cut(s) 498
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 1 cut(s) 388
Asp700I GAANNNNTTC 2 cut(s) 398, 458
AsuHPI GGTGA 1 cut(s) 340
AsuII TTCGAA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 498
BauI CACGAG 1 cut(s) 476
BbsI GAAGAC 2 cut(s) 310, 519
Bbv12I GWGCWC 1 cut(s) 498
BbvI GCAGC 1 cut(s) 470
BcgI CGANNNNNNTGC 1 cut(s) 30
BciVI GTATCC 1 cut(s) 322
BclI TGATCA 1 cut(s) 103
BfaI CTAG 1 cut(s) 221
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 1 cut(s) 484
BlsI GCNGC 1 cut(s) 485
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 2 cut(s) 184, 418
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 2 cut(s) 310, 519
Bpu14I TTCGAA 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse1I ACTGG 1 cut(s) 374
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 470
BseYI CCCAGC 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 478
BsmI GAATGC 2 cut(s) 214, 344
Bsp119I TTCGAA 1 cut(s) 392
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 67, 103
BspACI CCGC 1 cut(s) 72
BspCNI CTCAG 1 cut(s) 125
BspFNI CGCG 1 cut(s) 72
BspQI GCTCTTC 1 cut(s) 314
BspT104I TTCGAA 1 cut(s) 392
BsrI ACTGG 1 cut(s) 374
BssMI GATC 2 cut(s) 67, 103
BssSI CACGAG 1 cut(s) 476
Bst2BI CACGAG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 256
Bst6I CTCTTC 2 cut(s) 146, 314
BstBI TTCGAA 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 112
BstFNI CGCG 1 cut(s) 72
BstKTI GATC 2 cut(s) 70, 106
BstMBI GATC 2 cut(s) 67, 103
BstUI CGCG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 470
BstV2I GAAGAC 2 cut(s) 310, 519
BsuI GTATCC 1 cut(s) 322
BtsIMutI CAGTG 1 cut(s) 273
Csp6I GTAC 2 cut(s) 126, 421
CviJI RGCY 3 cut(s) 324, 483, 496
CviKI_1 RGCY 3 cut(s) 324, 483, 496
CviQI GTAC 2 cut(s) 126, 421
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 69, 105
DpnII GATC 2 cut(s) 67, 103
Eam1104I CTCTTC 2 cut(s) 146, 314
EarI CTCTTC 2 cut(s) 146, 314
Ecl136II GAGCTC 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 496
EcoICRI GAGCTC 1 cut(s) 496
EcoT22I ATGCAT 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 498
FaiI YATR 7 cut(s) 267, 269, 290, 405, 450, 492, 523
FauNDI CATATG 1 cut(s) 267
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 484
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 1 cut(s) 484
FspBI CTAG 1 cut(s) 221
GluI GCNGC 1 cut(s) 484
GsaI CCCAGC 1 cut(s) 216
HinfI GANTC 2 cut(s) 13, 202
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 421
Hpy188I TCNGA 5 cut(s) 90, 115, 207, 411, 511
Hpy188III TCNNGA 2 cut(s) 38, 356
Hpy8I GTNNAC 1 cut(s) 421
HpyAV CCTTC 2 cut(s) 388, 448
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4V TGCA 2 cut(s) 197, 344
HpyF3I CTNAG 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 2 cut(s) 67, 103
LguI GCTCTTC 1 cut(s) 314
LmnI GCTCC 1 cut(s) 501
LpnPI CCDG 5 cut(s) 198, 249, 293, 369, 387
Lsp1109I GCAGC 1 cut(s) 470
LweI GCATC 2 cut(s) 184, 418
MaeI CTAG 1 cut(s) 221
MalI GATC 2 cut(s) 69, 105
MboI GATC 2 cut(s) 67, 103
MboII GAAGA 5 cut(s) 163, 315, 331, 430, 524
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 3 cut(s) 48, 311, 388
MlyI GAGTC 1 cut(s) 211
MmeI TCCRAC 1 cut(s) 496
MnlI CCTC 4 cut(s) 165, 391, 434, 472
Mph1103I ATGCAT 1 cut(s) 346
MroXI GAANNNNTTC 2 cut(s) 398, 458
Mva1269I GAATGC 2 cut(s) 214, 344
MvnI CGCG 1 cut(s) 72
NdeI CATATG 1 cut(s) 267
NdeII GATC 2 cut(s) 67, 103
NsiI ATGCAT 1 cut(s) 346
NspV TTCGAA 1 cut(s) 392
PciSI GCTCTTC 1 cut(s) 314
PctI GAATGC 2 cut(s) 214, 344
PdmI GAANNNNTTC 2 cut(s) 398, 458
PfeI GAWTC 1 cut(s) 13
PkrI GCNGC 1 cut(s) 485
PleI GAGTC 1 cut(s) 210
PpsI GAGTC 1 cut(s) 210
PsiI TTATAA 1 cut(s) 523
Psp124BI GAGCTC 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 212
RsaI GTAC 2 cut(s) 127, 422
RsaNI GTAC 2 cut(s) 126, 421
SacI GAGCTC 1 cut(s) 498
SapI GCTCTTC 1 cut(s) 314
SatI GCNGC 1 cut(s) 484
Sau3AI GATC 2 cut(s) 67, 103
SchI GAGTC 1 cut(s) 211
SduI GDGCHC 1 cut(s) 498
SetI ASST 5 cut(s) 238, 326, 353, 426, 498
SfaNI GCATC 2 cut(s) 184, 418
SfuI TTCGAA 1 cut(s) 392
Sse9I AATT 3 cut(s) 48, 311, 388
SsiI CCGC 1 cut(s) 72
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 498
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 392, 426
TasI AATT 3 cut(s) 48, 311, 388
TatI WGTACW 1 cut(s) 125
TfiI GAWTC 1 cut(s) 13
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 483
TspDTI ATGAA 2 cut(s) 75, 255
TspRI CASTG 1 cut(s) 280
XapI RAATTY 1 cut(s) 388
XmnI GAANNNNTTC 2 cut(s) 398, 458
XspI CTAG 1 cut(s) 221
Zsp2I ATGCAT 1 cut(s) 346
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.