Rw5G046250

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000139
Physical Location & Seq
Forward (+)
80339286 .. 80347168
7883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046250.1

Sequence Viewer

Length: 780 bp
ATGCCTTGTTTCGGAGGAAATTCATTGGTTCAAAGTCTCAGTGCCCTGTTGGAGGTCAAAAATGGAAAGGTAACGGCCTCATGCAATGGTTTGGTGGTTTTAGGTGAAAGATTGTATAGCTCTTATACGAATTTGTCAGTGTGGAACCCATCAACTGGATTCTTCCGCAAAATACCTAGTCCAGAGTTTTCGTTGAAGGGAACATGTATTATCTCTATTATTGTTTTGGTCATGTCACCCGTTGACATATATTCAACCAGGGATAGTTCATGGAAAATTATCAGGGCTCCTTACCCATCATTCCCCCGCTATAATGGCAAGGATTATTTAGTTTCAAATGGAGCAATTCATTGGGTCAGGATTTGGATCCCAGAACCAGCTATCTCTGCTTTTGATTTGGCAGAGGAGGAGTTTCGGCAATTGCCATTGCCTCGTGCTCTGATCCAAAATGAAGATGTTATGAATGCAAGACCGATGGGAACTCAGGTTCGAATTCTCATAGGAGGATGCCTTTGTGTATGGTCAAATGGTGAATTTTGGGAGATGAAAGAGCATGCGGTCCCTGAATTTTGGGTTAAATTGTTTCAATTTAGTGTGCTCGATTTACCAAGTGTATTTGCTTCAACGTATGGTTGGACTCCTGTTTTTTTGGTCAGAATTGAATGTCATAGTGAAGAGAAACCTGTCTGTAGGGGTCGGTATAAGATTGAGGGTGGTGCGAAGGAGGGTTATTCTCAATATGGTGTCACGGTATATGATGAAACTCTACTTTCGGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1

Protein Analysis

259

Amino Acids

29.17

Weight (kDa)

6.33

Isoelectric Point (pI)

36.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000139)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g08100 FvH4_1g08100 FvH4_3g41771 FvH4_3g42301 FvH4_3g42302 FvH4_3g42303 FvH4_3g42304 FvH4_3g42321 FvH4_3g42360 FvH4_3g42420 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42450 FvH4_3g42460 FvH4_3g42470 FvH4_3g42490 FvH4_3g42581 FvH4_3g42582 FvH4_5g30990 FvH4_5g30990 FvH4_5g37874 FvH4_6g47401
prunus_persica Prupe.2G278400_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.2G278600_v2.0.a1 Prupe.6G215000_v2.0.a1
pyrus_communis pycom15g26480
rosa_chinensis RchiOBHm_Chr1g0361131 RchiOBHm_Chr1g0380591 RchiOBHm_Chr1g0380601 RchiOBHm_Chr5g0075661 RchiOBHm_Chr5g0075691 RchiOBHm_Chr5g0075921 RchiOBHm_Chr5g0075931 RchiOBHm_Chr5g0075941 RchiOBHm_Chr5g0076031 RchiOBHm_Chr5g0076061 RchiOBHm_Chr5g0076091 RchiOBHm_Chr5g0076101 RchiOBHm_Chr5g0076131 RchiOBHm_Chr5g0076141 RchiOBHm_Chr5g0076151 RchiOBHm_Chr7g0226061 RchiOBHm_Chr7g0226071 RchiOBHm_Chr7g0226091 RchiOBHm_Chr7g0226431 RchiOBHm_Chr7g0226441
rosa_laevigata RLG00000027157 RLG00000036604
rosa_multiflora Rmu_co8028714.1_g000001 Rmu_co8069518.1_g000001 Rmu_co8225880.1_g000001 Rmu_co8266415.1_g000001 Rmu_sc0001470.1_g000003 Rmu_sc0001470.1_g000004 Rmu_sc0001764.1_g000007 Rmu_sc0002627.1_g000001 Rmu_sc0002652.1_g000008 Rmu_sc0002652.1_g000010 Rmu_sc0002652.1_g000011 Rmu_sc0002652.1_g000013 Rmu_sc0002652.1_g000016 Rmu_sc0002820.1_g000003 Rmu_sc0002820.1_g000004 Rmu_sc0002863.1_g000037 Rmu_sc0003016.1_g000001 Rmu_sc0003601.1_g000001 Rmu_sc0003945.1_g000010 Rmu_sc0004200.1_g000005 Rmu_sc0004250.1_g000018 Rmu_sc0004647.1_g000006 Rmu_sc0004647.1_g000007 Rmu_sc0005762.1_g000005 Rmu_sc0005762.1_g000011 Rmu_sc0005762.1_g000014 Rmu_sc0005961.1_g000010 Rmu_sc0007791.1_g000001 Rmu_sc0007791.1_g000006 Rmu_sc0007791.1_g000010 Rmu_sc0008955.1_g000006 Rmu_sc0008955.1_g000008 Rmu_sc0008955.1_g000019 Rmu_sc0008955.1_g000021 Rmu_sc0010684.1_g000002 Rmu_sc0012777.1_g000003 Rmu_sc0014532.1_g000001 Rmu_sc0018126.1_g000001 Rmu_sc0021483.1_g000001 Rmu_sc0025529.1_g000001 Rmu_sc0027085.1_g000001 Rmu_sc0027085.1_g000003 Rmu_sc0028007.1_g000001 Rmu_sc0031697.1_g000001 Rmu_sc0033228.1_g000001 Rmu_sc0039198.1_g000001 Rmu_sc0042295.1_g000001 Rmu_ssc0000123.1_g000001
rosa_roxburghii Rroxscaffold_1G00005610 Rroxscaffold_1G00005660 Rroxscaffold_1G00005670 Rroxscaffold_1G00005680 Rroxscaffold_1G00005690 Rroxscaffold_1G00005700 Rroxscaffold_1G00005710 Rroxscaffold_1G00005730 Rroxscaffold_1G00005740 Rroxscaffold_1G00005750 Rroxscaffold_1G00005760 Rroxscaffold_1G00005920 Rroxscaffold_1G00005930 Rroxscaffold_1G00006710 Rroxscaffold_2G00084870 Rroxscaffold_3G00232830 Rroxscaffold_3G00233180 Rroxscaffold_3G00233260 Rroxscaffold_3G00233280 Rroxscaffold_4G00279150 Rroxscaffold_4G00279160
rosa_rugosa Rorug01G0285800 Rorug01G0285900 Rorug01G0348200 Rorug01G0419100 Rorug01G0419100 Rorug01G0422800 Rorug01G0422900 Rorug05G0435100 Rorug05G0435100 Rorug05G0435100 Rorug05G0435200 Rorug05G0442200 Rorug05G0442200 Rorug05G0442200 Rorug05G0444000 Rorug05G0444100 Rorug05G0444200 Rorug05G0444300 Rorug05G0444400 Rorug05G0444500 Rorug05G0444600 Rorug05G0444700 Rorug05G0444800 Rorug05G0444900 Rorug05G0445000 Rorug05G0445100 Rorug05G0445700.1 Rorug05G0445900.1 Rorug07G0237200
rosa_samantha Rh1BG318300 Rh1BG402600 Rh1DG349000 Rh1DG432800 Rh5AG498500 Rh5BG519400 Rh5BG521700 Rh5BG521800 Rh5BG521900 Rh5BG522100 Rh5BG522300 Rh5BG522600 Rh5BG522700 Rh5BG523100 Rh5CG543100 Rh5CG545700 Rh5CG545800 Rh5CG545900 Rh5CG546100 Rh5CG546300 Rh5CG546500 Rh5CG547000 Rh5DG525900 Rh5DG535600 Rh7BG368800 Rh7BG368900 Rh7CG387000 Rh7CG387100 Rh7DG379900
rosa_wichuraiana Rw0G009610 Rw0G011310 Rw1G038910 Rw1G038920 Rw2G049110 Rw5G045620 Rw5G046230 Rw5G046250 Rw5G046260 Rw5G046460 Rw5G046470 Rw5G046480 Rw5G046490 Rw5G046500 Rw5G046510 Rw5G046520 Rw7G019970 Rw7G032250 Rw7G032260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 155
AciI CCGC 3 cut(s) 166, 307, 557
AclWI GGATC 3 cut(s) 361, 374, 436
AcsI RAATTY 5 cut(s) 19, 130, 492, 533, 566
AfiI CCNNNNNNNGG 3 cut(s) 11, 52, 155
AflIII ACRYGT 1 cut(s) 203
AgsI TTSAA 7 cut(s) 32, 196, 255, 336, 587, 624, 662
AjnI CCWGG 1 cut(s) 257
AloI GAACNNNNNNTCC 2 cut(s) 471, 503
AluBI AGCT 2 cut(s) 120, 380
AluI AGCT 2 cut(s) 120, 380
Alw21I GWGCWC 2 cut(s) 439, 600
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 3 cut(s) 361, 374, 436
AoxI GGCC 1 cut(s) 75
ApoI RAATTY 5 cut(s) 19, 130, 492, 533, 566
AspS9I GGNCC 1 cut(s) 559
AsuHPI GGTGA 3 cut(s) 116, 228, 542
AsuII TTCGAA 1 cut(s) 490
AvaII GGWCC 1 cut(s) 559
BaeGI GKGCMC 1 cut(s) 46
BamHI GGATCC 1 cut(s) 366
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 2 cut(s) 439, 600
BccI CCATC 3 cut(s) 157, 304, 469
BceAI ACGGC 1 cut(s) 90
BciT130I CCWGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 177
BfmI CTRYAG 1 cut(s) 688
Bme1390I CCNGG 1 cut(s) 259
Bme18I GGWCC 1 cut(s) 559
BmgT120I GGNCC 1 cut(s) 559
BmiI GGNNCC 4 cut(s) 146, 288, 368, 561
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 490
BsaBI GATNNNNATC 1 cut(s) 365
BsaJI CCNNGG 1 cut(s) 258
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 52, 155
Bse1I ACTGG 1 cut(s) 160
Bse3DI GCAATG 2 cut(s) 91, 425
Bse8I GATNNNNATC 1 cut(s) 365
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 258
BseGI GGATG 1 cut(s) 512
BseJI GATNNNNATC 1 cut(s) 365
BseLI CCNNNNNNNGG 3 cut(s) 11, 52, 155
BseMI GCAATG 2 cut(s) 91, 425
BseMII CTCAG 2 cut(s) 52, 497
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 419, 422
BseSI GKGCMC 1 cut(s) 46
BshFI GGCC 1 cut(s) 77
BsiHKAI GWGCWC 2 cut(s) 439, 600
BslFI GGGAC 1 cut(s) 545
BslI CCNNNNNNNGG 3 cut(s) 11, 52, 155
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 1 cut(s) 545
BsmI GAATGC 1 cut(s) 469
BsnI GGCC 1 cut(s) 77
Bsp119I TTCGAA 1 cut(s) 490
Bsp1286I GDGCHC 4 cut(s) 46, 289, 439, 600
Bsp143I GATC 2 cut(s) 366, 441
BspACI CCGC 3 cut(s) 166, 307, 557
BspANI GGCC 1 cut(s) 77
BspCNI CTCAG 2 cut(s) 51, 496
BspLI GGNNCC 4 cut(s) 146, 288, 368, 561
BspPI GGATC 3 cut(s) 361, 374, 436
BspT104I TTCGAA 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 91, 425
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 258
BssMI GATC 2 cut(s) 366, 441
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 751
Bst6I CTCTTC 1 cut(s) 669
BstBI TTCGAA 1 cut(s) 490
BstC8I GCNNGC 1 cut(s) 555
BstDEI CTNAG 2 cut(s) 38, 483
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 1 cut(s) 512
BstKTI GATC 2 cut(s) 369, 444
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 2 cut(s) 366, 441
BstMWI GCNNNNNNNGC 2 cut(s) 315, 386
BstNI CCWGG 1 cut(s) 259
BstNSI RCATGY 2 cut(s) 207, 557
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 688
BstSLI GKGCMC 1 cut(s) 46
BstX2I RGATCY 1 cut(s) 366
BstYI RGATCY 1 cut(s) 366
BsuRI GGCC 1 cut(s) 77
BtsCI GGATG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 46, 144
Cac8I GCNNGC 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 559
CviAII CATG 5 cut(s) 81, 204, 232, 270, 554
CviJI RGCY 4 cut(s) 77, 120, 287, 380
CviKI_1 RGCY 4 cut(s) 77, 120, 287, 380
DdeI CTNAG 2 cut(s) 38, 483
DpnI GATC 2 cut(s) 368, 443
DpnII GATC 2 cut(s) 366, 441
Eam1104I CTCTTC 1 cut(s) 669
EarI CTCTTC 1 cut(s) 669
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 559
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 492
EcoRII CCWGG 1 cut(s) 257
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 5 cut(s) 84, 207, 235, 273, 557
FaqI GGGAC 1 cut(s) 545
FatI CATG 5 cut(s) 80, 203, 231, 269, 553
FauI CCCGC 1 cut(s) 314
FokI GGATG 1 cut(s) 519
FriOI GRGCYC 1 cut(s) 289
FspBI CTAG 1 cut(s) 177
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 5 cut(s) 84, 207, 235, 273, 557
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HinfI GANTC 2 cut(s) 159, 637
HphI GGTGA 3 cut(s) 116, 228, 542
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 14, 441, 656
Hpy188III TCNNGA 2 cut(s) 182, 358
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 2 cut(s) 190, 715
HpyCH4III ACNGT 1 cut(s) 751
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 2 cut(s) 84, 467
HpyF10VI GCNNNNNNNGC 2 cut(s) 315, 386
HpyF3I CTNAG 2 cut(s) 38, 483
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 5 cut(s) 84, 207, 235, 273, 557
Kzo9I GATC 2 cut(s) 366, 441
LmnI GCTCC 2 cut(s) 292, 341
LweI GCATC 1 cut(s) 497
MaeI CTAG 1 cut(s) 177
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 3 cut(s) 70, 234, 745
MalI GATC 2 cut(s) 368, 443
MboI GATC 2 cut(s) 366, 441
MboII GAAGA 3 cut(s) 154, 464, 686
MfeI CAATTG 1 cut(s) 419
MflI RGATCY 1 cut(s) 366
MhlI GDGCHC 4 cut(s) 46, 289, 439, 600
MlyI GAGTC 1 cut(s) 631
MmeI TCCRAC 2 cut(s) 30, 614
MnlI CCTC 9 cut(s) 8, 46, 88, 397, 400, 441, 497, 703, 718
MseI TTAA 1 cut(s) 576
MspR9I CCNGG 1 cut(s) 259
MunI CAATTG 1 cut(s) 419
Mva1269I GAATGC 1 cut(s) 469
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 2 cut(s) 315, 386
NdeII GATC 2 cut(s) 366, 441
NlaIII CATG 5 cut(s) 84, 207, 235, 273, 557
NlaIV GGNNCC 4 cut(s) 146, 288, 368, 561
NmuCI GTSAC 2 cut(s) 234, 745
NspI RCATGY 2 cut(s) 207, 557
NspV TTCGAA 1 cut(s) 490
PaeI GCATGC 1 cut(s) 557
PciI ACATGT 1 cut(s) 203
PctI GAATGC 1 cut(s) 469
PfeI GAWTC 1 cut(s) 159
PflMI CCANNNNNTGG 1 cut(s) 155
PleI GAGTC 1 cut(s) 631
PpsI GAGTC 1 cut(s) 631
PscI ACATGT 1 cut(s) 203
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 4 cut(s) 146, 288, 368, 561
PspPI GGNCC 1 cut(s) 559
PsuI RGATCY 1 cut(s) 366
SaqAI TTAA 1 cut(s) 576
Sau3AI GATC 2 cut(s) 366, 441
Sau96I GGNCC 1 cut(s) 559
SchI GAGTC 1 cut(s) 631
ScrFI CCNGG 1 cut(s) 259
SduI GDGCHC 4 cut(s) 46, 289, 439, 600
SetI ASST 9 cut(s) 57, 72, 106, 122, 178, 382, 489, 629, 685
SfaNI GCATC 1 cut(s) 497
SfcI CTRYAG 1 cut(s) 688
SfuI TTCGAA 1 cut(s) 490
SinI GGWCC 1 cut(s) 559
SphI GCATGC 1 cut(s) 557
SsiI CCGC 3 cut(s) 166, 307, 557
SspMI CTAG 1 cut(s) 177
StyD4I CCNGG 1 cut(s) 257
TaaI ACNGT 1 cut(s) 751
TaiI ACGT 1 cut(s) 629
TaqI TCGA 2 cut(s) 490, 600
TaqII GACCGA 1 cut(s) 487
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 2 cut(s) 46, 144
TseFI GTSAC 2 cut(s) 234, 745
Tsp45I GTSAC 2 cut(s) 234, 745
TspDTI ATGAA 7 cut(s) 12, 258, 338, 465, 476, 560, 774
TspRI CASTG 2 cut(s) 46, 144
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 559
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 5 cut(s) 19, 130, 492, 533, 566
XceI RCATGY 2 cut(s) 207, 557
XspI CTAG 1 cut(s) 177
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.