Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006135

Physical Location & Seq

Genomic Coordinates Forward (+)

20695433 .. 20698292

Gene Structure 2860 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G55740.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGGATACGAGTGAAGCAAGGAACCGTAAAGTTGTTGCAGTTGAACAATTCGATCTCGAAGTCCCTGAGACTGCTCATCAGATTAGCAGCGATTCATGGTTTCAGGTAGCTTTTGTTCTAACGACCGGTATAAACAGTGCCTATGTGTTGGGATATTCCGGGACAGTCATGGTTCCTTTGGGTTGGATTGGTGGTGTGGTTGGTCTCATTCTTGCTACCGCAATCTCTCTTTACGCAAACACTCTTATCGCCAAACTTCATGAGTTTGGTGGCAAAAGACACATTCGTTATAGAGATCTTGCAGGCTTCATCTATGGTAAAAAGATGTATCGTGTTACATGGGGATTGCAATATGTCAATCTTTTCATGATTAATTGTGGCTTCATCATACTTGCTGGTTCAGCCTTAAAGGCTGTTTATGTACTTTTTAGAGATGATAGTCTCATGAAACTGCCTCACTTCATCGCCATCGCGGGTGTTGTATGCGCGATTTTCGCAATCGGTATTCCTCATTTATCAGCTCTTGGAATCTGGCTAGGAGTTTCAACAATCCTCAGCATAATCTACATTATTGTTGCAATAGTTCTATCAGCTAAAGATGGAGTAAACAAGCCTGAAAGAGATTACAACATACAAGGATCATCAATAAACAAACTCTTTACCATAACAGGAGCAGCTGCAAATCTAGTTTTCGCATTCAACACGGGAATGCTCCCGGAAATACAGGCCACGGTGAAGCAACCGGTCGTTAAAAACATGATGAAGGCTCTGTATTTTCAATTCACTGTTGGTGTTTTACCTATGTACGCGGTTACATTCATCGGATATTGGGCTTACGGGTCCTCGACATCGACTTATCTCTTAAACAGCGTCAGTGGACCTGTTTGGGTCAAAGCACTCGCTAACATTTCAGCTTTTCTCCAATCTGTTATCTCTTTACATATTTTTGCAAGTCCGACTTATGAGTATATGGACACAAAGTATGGAGTCAAAGGAAGTCCATTGGCAATGAAGAATCTGTTGTTTAGAACAGTAGCAAGAGGAAGCTACATTGCGGTGAGCACTCTTCTCTCTGCGCTTTTACCGTTTCTCGGAGATTTCATGAGCCTTACCGGAGCGATAAGCACGTTCCCTCTCACATTCATATTAGCGAATCACATGTATCTTGTTGCTATGAATGATGAGCTTAGTCTTGTGCAAAAGCTATGGCATTGGCTCAATGTTTGCTTCTTTGGATTAATGTCTCTTGCTGCTGCTATTGCTGCTGTTAGACTCATCTCTGTTGACTCCAAGAACTTCCATGTTTTTGCTGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015193 GO:0015238 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015824 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

439

Amino Acids

48.09

Weight (kDa)

9.19

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	1 - 367	2.7e-83	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36590 AT2G39890 AT2G39890 AT2G39890 AT3G55740 AT3G55740 AT3G55740
fragaria_vesca	FvH4_7g23780
malus_domestica	MD01G1145200.v1.1 MD07G1212200.v1.1
prunus_persica	Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1
pyrus_communis	pycom01g16470 pycom07g19520
rosa_chinensis	RchiOBHm_Chr1g0369121
rosa_laevigata	RLG00000027156
rosa_multiflora	Rmu_sc0004250.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287980
rosa_rugosa	Rorug01G0348200
rosa_samantha	Rh1AG355000 Rh1BG318400 Rh1CG332700 Rh1DG349100
rosa_wichuraiana	Rw1G031330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	473, 488, 809
AciI	CCGC	4 cut(s)	219, 473, 809, 1055
AclWI	GGATC	1 cut(s)	646
AfaI	GTAC	2 cut(s)	423, 806
AfiI	CCNNNNNNNGG	1 cut(s)	1091
AflIII	ACRYGT	1 cut(s)	1158
AgeI	ACCGGT	2 cut(s)	125, 742
AgsI	TTSAA	4 cut(s)	44, 546, 700, 779
AluBI	AGCT	8 cut(s)	110, 521, 593, 677, 914, 1047, 1186, 1204
AluI	AGCT	8 cut(s)	110, 521, 593, 677, 914, 1047, 1186, 1204
Alw21I	GWGCWC	1 cut(s)	1064
Alw26I	GTCTC	4 cut(s)	62, 209, 446, 1248
AlwI	GGATC	1 cut(s)	646
AoxI	GGCC	1 cut(s)	726
ApeKI	GCWGC	6 cut(s)	87, 674, 677, 1250, 1253, 1262
AseI	ATTAAT	2 cut(s)	372, 1238
AsiGI	ACCGGT	2 cut(s)	125, 742
AspLEI	GCGC	2 cut(s)	488, 1078
AspS9I	GGNCC	2 cut(s)	840, 878
AsuC2I	CCSGG	2 cut(s)	160, 716
AsuHPI	GGTGA	2 cut(s)	745, 1069
AvaII	GGWCC	2 cut(s)	840, 878
Bbv12I	GWGCWC	1 cut(s)	1064
BbvCI	CCTCAGC	1 cut(s)	554
BbvI	GCAGC	6 cut(s)	99, 664, 686, 1237, 1240, 1249
BccI	CCATC	2 cut(s)	476, 593
BcnI	CCSGG	2 cut(s)	160, 716
BcoDI	GTCTC	4 cut(s)	62, 209, 446, 1248
BfaI	CTAG	2 cut(s)	536, 686
BglI	GCCNNNNNGGC	1 cut(s)	410
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	6 cut(s)	88, 675, 678, 1251, 1254, 1263
BlsI	GCNGC	6 cut(s)	89, 676, 679, 1252, 1255, 1264
Bme1390I	CCNGG	2 cut(s)	160, 716
Bme18I	GGWCC	2 cut(s)	840, 878
BmgT120I	GGNCC	2 cut(s)	840, 878
BmiI	GGNNCC	3 cut(s)	23, 174, 841
BmrFI	CCNGG	2 cut(s)	160, 716
Bpu10I	CCTNAGC	1 cut(s)	554
BpuMI	CCSGG	2 cut(s)	160, 716
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	729
BsaWI	WCCGGW	3 cut(s)	125, 742, 1112
Bsc4I	CCNNNNNNNGG	1 cut(s)	1091
Bse118I	RCCGGY	2 cut(s)	125, 742
Bse3DI	GCAATG	2 cut(s)	1014, 1050
BseDI	CCNNGG	1 cut(s)	729
BseLI	CCNNNNNNNGG	1 cut(s)	1091
BseMI	GCAATG	2 cut(s)	1014, 1050
BseMII	CTCAG	2 cut(s)	57, 568
BseXI	GCAGC	6 cut(s)	99, 664, 686, 1237, 1240, 1249
Bsh1236I	CGCG	3 cut(s)	473, 488, 809
Bsh1285I	CGRYCG	2 cut(s)	126, 747
BshFI	GGCC	1 cut(s)	728
BshTI	ACCGGT	2 cut(s)	125, 742
BsiEI	CGRYCG	2 cut(s)	126, 747
BsiHKAI	GWGCWC	1 cut(s)	1064
BsiSI	CCGG	5 cut(s)	126, 159, 716, 743, 1113
BslFI	GGGAC	2 cut(s)	47, 175
BslI	CCNNNNNNNGG	1 cut(s)	1091
BsmAI	GTCTC	4 cut(s)	62, 209, 446, 1248
BsmFI	GGGAC	2 cut(s)	47, 175
BsmI	GAATGC	2 cut(s)	695, 714
BsnI	GGCC	1 cut(s)	728
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	1064
Bsp143I	GATC	3 cut(s)	52, 295, 638
BspACI	CCGC	4 cut(s)	219, 473, 809, 1055
BspANI	GGCC	1 cut(s)	728
BspCNI	CTCAG	2 cut(s)	58, 567
BspFNI	CGCG	3 cut(s)	473, 488, 809
BspHI	TCATGA	4 cut(s)	259, 366, 444, 1101
BspLI	GGNNCC	3 cut(s)	23, 174, 841
BspPI	GGATC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	1014, 1050
BsrFI	RCCGGY	2 cut(s)	125, 742
BssAI	RCCGGY	2 cut(s)	125, 742
BssECI	CCNNGG	1 cut(s)	729
BssMI	GATC	3 cut(s)	52, 295, 638
Bst4CI	ACNGT	7 cut(s)	26, 137, 166, 733, 787, 1033, 1086
Bst6I	CTCTTC	1 cut(s)	1071
BstC8I	GCNNGC	1 cut(s)	304
BstDEI	CTNAG	3 cut(s)	66, 554, 1187
BstDSI	CCRYGG	1 cut(s)	729
BstFNI	CGCG	3 cut(s)	473, 488, 809
BstHHI	GCGC	2 cut(s)	488, 1078
BstKTI	GATC	3 cut(s)	55, 298, 641
BstMAI	GTCTC	4 cut(s)	62, 209, 446, 1248
BstMBI	GATC	3 cut(s)	52, 295, 638
BstMCI	CGRYCG	2 cut(s)	126, 747
BstMWI	GCNNNNNNNGC	5 cut(s)	401, 410, 494, 1259, 1262
BstNSI	RCATGY	1 cut(s)	1162
BstSCI	CCNGG	2 cut(s)	158, 714
BstUI	CGCG	3 cut(s)	473, 488, 809
BstV1I	GCAGC	6 cut(s)	99, 664, 686, 1237, 1240, 1249
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BsuRI	GGCC	1 cut(s)	728
BtgI	CCRYGG	1 cut(s)	729
BtgZI	GCGATG	2 cut(s)	448, 454
BtsIMutI	CAGTG	3 cut(s)	142, 783, 880
Cac8I	GCNNGC	1 cut(s)	304
CciI	TCATGA	4 cut(s)	259, 366, 444, 1101
CfoI	GCGC	2 cut(s)	488, 1078
Cfr10I	RCCGGY	2 cut(s)	125, 742
Cfr13I	GGNCC	2 cut(s)	840, 878
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	2 cut(s)	422, 805
CspAI	ACCGGT	2 cut(s)	125, 742
CviQI	GTAC	2 cut(s)	422, 805
DdeI	CTNAG	3 cut(s)	66, 554, 1187
DpnI	GATC	3 cut(s)	54, 297, 640
DpnII	GATC	3 cut(s)	52, 295, 638
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
Eco31I	GGTCTC	1 cut(s)	209
Eco47I	GGWCC	2 cut(s)	840, 878
EcoO109I	RGGNCCY	1 cut(s)	840
FalI	AAGNNNNNCTT	2 cut(s)	943, 975
FaqI	GGGAC	2 cut(s)	47, 175
FauI	CCCGC	1 cut(s)	466
Fnu4HI	GCNGC	6 cut(s)	88, 675, 678, 1251, 1254, 1263
Fsp4HI	GCNGC	6 cut(s)	88, 675, 678, 1251, 1254, 1263
FspBI	CTAG	2 cut(s)	536, 686
GlaI	GCGC	2 cut(s)	487, 1077
GluI	GCNGC	6 cut(s)	88, 675, 678, 1251, 1254, 1263
HaeIII	GGCC	1 cut(s)	728
HapII	CCGG	5 cut(s)	126, 159, 716, 743, 1113
HgaI	GACGC	1 cut(s)	859
HhaI	GCGC	2 cut(s)	488, 1078
Hin6I	GCGC	2 cut(s)	486, 1076
HinP1I	GCGC	2 cut(s)	486, 1076
HincII	GTYRAC	1 cut(s)	1285
HindII	GTYRAC	1 cut(s)	1285
HinfI	GANTC	7 cut(s)	92, 528, 987, 1015, 1153, 1272, 1286
HpaII	CCGG	5 cut(s)	126, 159, 716, 743, 1113
HphI	GGTGA	2 cut(s)	745, 1069
Hpy166II	GTNNAC	3 cut(s)	607, 878, 1285
Hpy188I	TCNGA	4 cut(s)	81, 824, 957, 1094
Hpy188III	TCNNGA	5 cut(s)	56, 260, 367, 445, 1102
Hpy8I	GTNNAC	3 cut(s)	607, 878, 1285
HpyAV	CCTTC	1 cut(s)	757
HpyCH4III	ACNGT	7 cut(s)	26, 137, 166, 733, 787, 1033, 1086
HpyCH4IV	ACGT	1 cut(s)	1127
HpyCH4V	TGCA	7 cut(s)	38, 302, 349, 578, 680, 950, 1198
HpyF10VI	GCNNNNNNNGC	5 cut(s)	401, 410, 494, 1259, 1262
HpyF3I	CTNAG	3 cut(s)	66, 554, 1187
HpySE526I	ACGT	1 cut(s)	1127
HspAI	GCGC	2 cut(s)	486, 1076
Kzo9I	GATC	3 cut(s)	52, 295, 638
LmnI	GCTCC	3 cut(s)	671, 717, 1115
Lsp1109I	GCAGC	6 cut(s)	99, 664, 686, 1237, 1240, 1249
MaeI	CTAG	2 cut(s)	536, 686
MaeII	ACGT	1 cut(s)	1127
MaeIII	GTNAC	2 cut(s)	334, 811
MalI	GATC	3 cut(s)	54, 297, 640
MboI	GATC	3 cut(s)	52, 295, 638
MboII	GAAGA	2 cut(s)	1024, 1058
MflI	RGATCY	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	1064
MluCI	AATT	3 cut(s)	47, 373, 779
MlyI	GAGTC	3 cut(s)	996, 1266, 1280
MmeI	TCCRAC	2 cut(s)	164, 980
MnlI	CCTC	6 cut(s)	465, 519, 563, 853, 1034, 1143
MseI	TTAA	5 cut(s)	372, 407, 750, 863, 1238
MslI	CAYNNNNRTG	2 cut(s)	707, 1055
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	5 cut(s)	126, 159, 716, 743, 1113
MspR9I	CCNGG	2 cut(s)	160, 716
Mva1269I	GAATGC	2 cut(s)	695, 714
MvnI	CGCG	3 cut(s)	473, 488, 809
MwoI	GCNNNNNNNGC	5 cut(s)	401, 410, 494, 1259, 1262
NciI	CCSGG	2 cut(s)	160, 716
NdeII	GATC	3 cut(s)	52, 295, 638
NlaIV	GGNNCC	3 cut(s)	23, 174, 841
NspI	RCATGY	1 cut(s)	1162
PagI	TCATGA	4 cut(s)	259, 366, 444, 1101
PciI	ACATGT	1 cut(s)	1158
PctI	GAATGC	2 cut(s)	695, 714
PfeI	GAWTC	4 cut(s)	92, 528, 1015, 1153
PfoI	TCCNGGA	2 cut(s)	158, 714
PinAI	ACCGGT	2 cut(s)	125, 742
PkrI	GCNGC	6 cut(s)	89, 676, 679, 1252, 1255, 1264
PleI	GAGTC	3 cut(s)	995, 1266, 1280
PpsI	GAGTC	3 cut(s)	995, 1266, 1280
PpuMI	RGGWCCY	1 cut(s)	840
PscI	ACATGT	1 cut(s)	1158
PshBI	ATTAAT	2 cut(s)	372, 1238
Psp5II	RGGWCCY	1 cut(s)	840
PspN4I	GGNNCC	3 cut(s)	23, 174, 841
PspPI	GGNCC	2 cut(s)	840, 878
PspPPI	RGGWCCY	1 cut(s)	840
PsrI	GAACNNNNNNTAC	2 cut(s)	99, 131
PsuI	RGATCY	1 cut(s)	295
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	423, 806
RsaNI	GTAC	2 cut(s)	422, 805
RseI	CAYNNNNRTG	2 cut(s)	707, 1055
SaqAI	TTAA	5 cut(s)	372, 407, 750, 863, 1238
SatI	GCNGC	6 cut(s)	88, 675, 678, 1251, 1254, 1263
Sau3AI	GATC	3 cut(s)	52, 295, 638
Sau96I	GGNCC	2 cut(s)	840, 878
SchI	GAGTC	3 cut(s)	996, 1266, 1280
ScrFI	CCNGG	2 cut(s)	160, 716
SduI	GDGCHC	1 cut(s)	1064
SinI	GGWCC	2 cut(s)	840, 878
SmiMI	CAYNNNNRTG	2 cut(s)	707, 1055
Sse9I	AATT	3 cut(s)	47, 373, 779
SsiI	CCGC	4 cut(s)	219, 473, 809, 1055
SspMI	CTAG	2 cut(s)	536, 686
StyD4I	CCNGG	2 cut(s)	158, 714
TaaI	ACNGT	7 cut(s)	26, 137, 166, 733, 787, 1033, 1086
TaiI	ACGT	1 cut(s)	1130
TaqI	TCGA	4 cut(s)	51, 57, 845, 851
TasI	AATT	3 cut(s)	47, 373, 779
TatI	WGTACW	1 cut(s)	421
TfiI	GAWTC	4 cut(s)	92, 528, 1015, 1153
Tru1I	TTAA	5 cut(s)	372, 407, 750, 863, 1238
Tru9I	TTAA	5 cut(s)	372, 407, 750, 863, 1238
TscAI	CASTG	3 cut(s)	142, 790, 880
TseI	GCWGC	6 cut(s)	87, 674, 677, 1250, 1253, 1262
TspRI	CASTG	3 cut(s)	142, 790, 880
VpaK11BI	GGWCC	2 cut(s)	840, 878
VspI	ATTAAT	2 cut(s)	372, 1238
XceI	RCATGY	1 cut(s)	1162
XspI	CTAG	2 cut(s)	536, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.