Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006135

Physical Location & Seq

Genomic Coordinates Forward (+)

25531302 .. 25534266

Gene Structure 2965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1145200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGATTCTACCAGTGAAGCTCATTCCGGTTCTAGAAAGGTTCATGATGAAGAAAGCACCGAAATCCCAGAAACCGCTCATCAGATTAGCACAGATTCATGGTTTCAAGTGGGATTCGTCCTCACCACCGGTATCAACAGTGCGTATGTTCTGGGATACTCTGGTAATGTCATGATTCCTCTTGGTTGGATCGGCGGTGTGATCGGTTTAATTCTAGCCACTGCAATATCACTCTATGCAAATGCTCTCATTGCCAAGCTTCATGAGTATGGAGGGGTTAGGCACATCAGATACAGAGACCTTGCTGGATTTATATATGGCAAGAAAGCTTACTCTCTGACATGGGGATTGCAATATGTCAATCTCTTCATGATTAACACTGGTTTTATCATCTTGGCTGGTCAGGCACTCAAGGCTGCGTATGTTCTGTTTAGGGATGACCATACCATGAAGCTACCACATTTTATTGCCATTTCAGGCTTTGTGTGCGCTGTATTTGCCATAAGTATACCGCACTTGTCAGCTCTGAGGATTTGGCTGGGGTTTTCAACAGTCTTCAGCTTGATGTATATTGTTATAGCAATCGTACTGTCACTTAAAGATGGACTTAAAGCACCGTCCAGGGATTATGACATCCCAGGGACTTCAACAAGCAGAATATTTACTACAATCGGAGCGGCTGCTAGCCTTGTTTTTGCATTCAACACGGGAATGCTACCAGAGATACAGGCTACAGTGAGGAAGCCAGTGGTTGACAACATGATGAAAGCTCTGTACTTTCAGTTCACAGCCGGTGTTGTGCCGTTGTATGCCGTCTGTTTTATAGGGTATTGGGCATATGGAAATAACACATCATCTTATCTGCTCAACAACGTCAACGGACCGGTCTGGGTGAGGGCGATGGCCAATTTTGCTGCCTTCCTGCAAACAGTCATTGCCCTGCATATATTTGCAAGTCCAATGTACGAATATCTGGATACAAAGTTCGGCATCAAAGGAAGTCCACTGAAAATTCAGAACTTGATATTCAGAATCACCGTTCGAGGCGGCTACTTGGCGATTAACACTCTGGTTTCGGCTCTGCTGCCGTTCCTCGGAGATTTCATGAGCCTCACAGGAGCCATAAGCACATTCCCCCTCACATTTATTCTTGCAAACCACATGTATTTGGTGGCAAAGAAGGAGAAGCTGACTTCTGCACAGAAGTGCTGGCATTGGCTGAATGTTGGCTTCTTCGGCCTTTTGGCTGTTGCAGCTTTGATTTCGGCCTTGAGGCTCATAGCCGTAGATTCCAAAACGTACCATGTATTTGCTGATCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006855 GO:0006865 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009628 GO:0015075 GO:0015171 GO:0015175 GO:0015179 GO:0015193 GO:0015238 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015824 GO:0015849 GO:0015893 GO:0016020 GO:0022857 GO:0034220 GO:0035524 GO:0042221 GO:0042493 GO:0043090 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:0080167 GO:0098655 GO:0098656 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

441

Amino Acids

48.35

Weight (kDa)

9.19

Isoelectric Point (pI)

23.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	31 - 424	4e-85	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006135)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36590 AT2G39890 AT2G39890 AT2G39890 AT3G55740 AT3G55740 AT3G55740
fragaria_vesca	FvH4_7g23780
malus_domestica	MD01G1145200.v1.1 MD07G1212200.v1.1
prunus_persica	Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1 Prupe.2G244500_v2.0.a1
pyrus_communis	pycom01g16470 pycom07g19520
rosa_chinensis	RchiOBHm_Chr1g0369121
rosa_laevigata	RLG00000027156
rosa_multiflora	Rmu_sc0004250.1_g000014
rosa_roxburghii	Rroxscaffold_4G00287980
rosa_rugosa	Rorug01G0348200
rosa_samantha	Rh1AG355000 Rh1BG318400 Rh1CG332700 Rh1DG349100
rosa_wichuraiana	Rw1G031330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	77, 677
AccI	GTMKAC	1 cut(s)	508
AciI	CCGC	5 cut(s)	75, 195, 512, 677, 1047
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	1 cut(s)	1011
AcuI	CTGAAG	1 cut(s)	541
AfaI	GTAC	4 cut(s)	588, 776, 965, 1301
AfiI	CCNNNNNNNGG	1 cut(s)	1094
AflIII	ACRYGT	1 cut(s)	1161
AgeI	ACCGGT	2 cut(s)	128, 883
AgsI	TTSAA	4 cut(s)	107, 549, 648, 703
AjnI	CCWGG	2 cut(s)	620, 637
AleI	CACNNNNGTG	1 cut(s)	1204
AloI	GAACNNNNNNTCC	2 cut(s)	968, 1000
AluBI	AGCT	9 cut(s)	20, 259, 329, 454, 524, 561, 770, 1189, 1256
AluI	AGCT	9 cut(s)	20, 259, 329, 454, 524, 561, 770, 1189, 1256
Alw26I	GTCTC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	3 cut(s)	903, 1237, 1266
ApeKI	GCWGC	5 cut(s)	416, 680, 914, 1084, 1253
ApoI	RAATTY	1 cut(s)	1011
AsiGI	ACCGGT	2 cut(s)	128, 883
AspLEI	GCGC	1 cut(s)	491
AspS9I	GGNCC	1 cut(s)	881
AsuHPI	GGTGA	3 cut(s)	115, 904, 1027
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	1 cut(s)	881
BaeI	ACNNNNGTAYC	2 cut(s)	148, 181
BalI	TGGCCA	1 cut(s)	905
BbsI	GAAGAC	1 cut(s)	547
BbvI	GCAGC	5 cut(s)	403, 667, 901, 1071, 1265
BccI	CCATC	2 cut(s)	596, 895
BceAI	ACGGC	4 cut(s)	787, 797, 1072, 1268
BciT130I	CCWGG	2 cut(s)	622, 639
BciVI	GTATCC	2 cut(s)	149, 970
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	3 cut(s)	33, 215, 684
BfmI	CTRYAG	1 cut(s)	732
BfuI	GTATCC	2 cut(s)	149, 970
BisI	GCNGC	7 cut(s)	417, 678, 681, 915, 1048, 1085, 1254
BlsI	GCNGC	7 cut(s)	418, 679, 682, 916, 1049, 1086, 1255
Bme1390I	CCNGG	2 cut(s)	622, 639
Bme18I	GGWCC	1 cut(s)	881
BmgT120I	GGNCC	1 cut(s)	881
BmiI	GGNNCC	1 cut(s)	1120
BmrFI	CCNGG	2 cut(s)	622, 639
BmsI	GCATC	1 cut(s)	999
BmtI	GCTAGC	1 cut(s)	687
BpiI	GAAGAC	1 cut(s)	547
BpuEI	CTTGAG	2 cut(s)	395, 1291
BsaI	GGTCTC	1 cut(s)	291
BsaJI	CCNNGG	4 cut(s)	621, 637, 638, 1093
BsaWI	WCCGGW	3 cut(s)	26, 128, 883
Bsc4I	CCNNNNNNNGG	1 cut(s)	1094
Bse118I	RCCGGY	3 cut(s)	128, 791, 883
Bse1I	ACTGG	3 cut(s)	12, 385, 746
Bse3DI	GCAATG	2 cut(s)	249, 933
BseBI	CCWGG	2 cut(s)	622, 639
BseDI	CCNNGG	4 cut(s)	621, 637, 638, 1093
BseGI	GGATG	2 cut(s)	442, 633
BseLI	CCNNNNNNNGG	1 cut(s)	1094
BseMI	GCAATG	2 cut(s)	249, 933
BseMII	CTCAG	1 cut(s)	518
BseNI	ACTGG	3 cut(s)	12, 385, 746
BseXI	GCAGC	5 cut(s)	403, 667, 901, 1071, 1265
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	1182
BshFI	GGCC	3 cut(s)	905, 1239, 1268
BshTI	ACCGGT	2 cut(s)	128, 883
BsiSI	CCGG	4 cut(s)	27, 129, 792, 884
BslFI	GGGAC	1 cut(s)	655
BslI	CCNNNNNNNGG	1 cut(s)	1094
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	1 cut(s)	655
BsmI	GAATGC	2 cut(s)	698, 717
BsnI	GGCC	3 cut(s)	905, 1239, 1268
Bso31I	GGTCTC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	189, 201, 1315
BspACI	CCGC	5 cut(s)	75, 195, 512, 677, 1047
BspANI	GGCC	3 cut(s)	905, 1239, 1268
BspCNI	CTCAG	1 cut(s)	519
BspHI	TCATGA	5 cut(s)	43, 171, 262, 369, 1104
BspLI	GGNNCC	1 cut(s)	1120
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	1 cut(s)	291
BsrBI	CCGCTC	2 cut(s)	77, 677
BsrDI	GCAATG	2 cut(s)	249, 933
BsrFI	RCCGGY	3 cut(s)	128, 791, 883
BsrI	ACTGG	3 cut(s)	12, 385, 746
BssAI	RCCGGY	3 cut(s)	128, 791, 883
BssECI	CCNNGG	4 cut(s)	621, 637, 638, 1093
BssMI	GATC	3 cut(s)	189, 201, 1315
BssNAI	GTATAC	1 cut(s)	509
Bst1107I	GTATAC	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	622, 639
Bst4CI	ACNGT	7 cut(s)	140, 553, 591, 618, 736, 931, 1039
Bst6I	CTCTTC	1 cut(s)	371
BstC8I	GCNNGC	2 cut(s)	685, 1211
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	2 cut(s)	442, 633
BstHHI	GCGC	1 cut(s)	491
BstKTI	GATC	3 cut(s)	192, 204, 1318
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	3 cut(s)	189, 201, 1315
BstMWI	GCNNNNNNNGC	8 cut(s)	251, 404, 413, 486, 497, 911, 1236, 1253
BstNI	CCWGG	2 cut(s)	622, 639
BstNSI	RCATGY	1 cut(s)	1165
BstSCI	CCNGG	2 cut(s)	620, 637
BstSFI	CTRYAG	1 cut(s)	732
BstV1I	GCAGC	5 cut(s)	403, 667, 901, 1071, 1265
BstV2I	GAAGAC	1 cut(s)	547
BstZ17I	GTATAC	1 cut(s)	509
BsuI	GTATCC	2 cut(s)	149, 970
BsuRI	GGCC	3 cut(s)	905, 1239, 1268
BtgZI	GCGATG	1 cut(s)	914
BtsCI	GGATG	2 cut(s)	442, 633
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	7 cut(s)	19, 145, 219, 378, 741, 753, 1004
Cac8I	GCNNGC	2 cut(s)	685, 1211
CciI	TCATGA	5 cut(s)	43, 171, 262, 369, 1104
CfoI	GCGC	1 cut(s)	491
Cfr10I	RCCGGY	3 cut(s)	128, 791, 883
Cfr13I	GGNCC	1 cut(s)	881
CpoI	CGGWCCG	1 cut(s)	881
Csp6I	GTAC	4 cut(s)	587, 775, 964, 1300
CspAI	ACCGGT	2 cut(s)	128, 883
CspI	CGGWCCG	1 cut(s)	881
CviQI	GTAC	4 cut(s)	587, 775, 964, 1300
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	3 cut(s)	191, 203, 1317
DpnII	GATC	3 cut(s)	189, 201, 1315
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	1 cut(s)	371
EarI	CTCTTC	1 cut(s)	371
Eco31I	GGTCTC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	881
Eco57I	CTGAAG	1 cut(s)	541
EcoRII	CCWGG	2 cut(s)	620, 637
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	655
FauNDI	CATATG	1 cut(s)	838
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	7 cut(s)	417, 678, 681, 915, 1048, 1085, 1254
FokI	GGATG	2 cut(s)	449, 620
Fsp4HI	GCNGC	7 cut(s)	417, 678, 681, 915, 1048, 1085, 1254
FspBI	CTAG	3 cut(s)	33, 215, 684
GlaI	GCGC	1 cut(s)	490
GluI	GCNGC	7 cut(s)	417, 678, 681, 915, 1048, 1085, 1254
GsaI	CCCAGC	1 cut(s)	542
HaeIII	GGCC	3 cut(s)	905, 1239, 1268
HapII	CCGG	4 cut(s)	27, 129, 792, 884
HhaI	GCGC	1 cut(s)	491
Hin6I	GCGC	1 cut(s)	489
HinP1I	GCGC	1 cut(s)	489
HincII	GTYRAC	2 cut(s)	754, 877
HindII	GTYRAC	2 cut(s)	754, 877
HindIII	AAGCTT	2 cut(s)	257, 327
HinfI	GANTC	6 cut(s)	5, 95, 114, 175, 1032, 1289
HpaII	CCGG	4 cut(s)	27, 129, 792, 884
HphI	GGTGA	3 cut(s)	115, 904, 1027
Hpy166II	GTNNAC	5 cut(s)	509, 754, 786, 877, 1004
Hpy188I	TCNGA	8 cut(s)	84, 290, 339, 528, 674, 1017, 1031, 1097
Hpy188III	TCNNGA	7 cut(s)	33, 44, 172, 263, 370, 974, 1105
Hpy8I	GTNNAC	5 cut(s)	509, 754, 786, 877, 1004
HpyAV	CCTTC	2 cut(s)	928, 1174
HpyCH4III	ACNGT	7 cut(s)	140, 553, 591, 618, 736, 931, 1039
HpyCH4IV	ACGT	2 cut(s)	873, 1298
HpyF10VI	GCNNNNNNNGC	8 cut(s)	251, 404, 413, 486, 497, 911, 1236, 1253
HpyF3I	CTNAG	1 cut(s)	527
HpySE526I	ACGT	2 cut(s)	873, 1298
HspAI	GCGC	1 cut(s)	489
Kzo9I	GATC	3 cut(s)	189, 201, 1315
LmnI	GCTCC	2 cut(s)	674, 1118
Lsp1109I	GCAGC	5 cut(s)	403, 667, 901, 1071, 1265
LweI	GCATC	1 cut(s)	999
MaeI	CTAG	3 cut(s)	33, 215, 684
MaeII	ACGT	2 cut(s)	873, 1298
MaeIII	GTNAC	1 cut(s)	591
MalI	GATC	3 cut(s)	191, 203, 1317
MbiI	CCGCTC	2 cut(s)	77, 677
MboI	GATC	3 cut(s)	189, 201, 1315
MboII	GAAGA	4 cut(s)	62, 358, 547, 1225
MlsI	TGGCCA	1 cut(s)	905
MluCI	AATT	3 cut(s)	210, 907, 1011
MluNI	TGGCCA	1 cut(s)	905
MmeI	TCCRAC	1 cut(s)	167
Mox20I	TGGCCA	1 cut(s)	905
MscI	TGGCCA	1 cut(s)	905
MseI	TTAA	5 cut(s)	209, 375, 597, 609, 1062
MslI	CAYNNNNRTG	3 cut(s)	267, 710, 1204
Msp20I	TGGCCA	1 cut(s)	905
MspI	CCGG	4 cut(s)	27, 129, 792, 884
MspR9I	CCNGG	2 cut(s)	622, 639
Mva1269I	GAATGC	2 cut(s)	698, 717
MvaI	CCWGG	2 cut(s)	622, 639
MwoI	GCNNNNNNNGC	8 cut(s)	251, 404, 413, 486, 497, 911, 1236, 1253
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	3 cut(s)	189, 201, 1315
NheI	GCTAGC	1 cut(s)	683
NlaIV	GGNNCC	1 cut(s)	1120
NmuCI	GTSAC	1 cut(s)	591
NspI	RCATGY	1 cut(s)	1165
OliI	CACNNNNGTG	1 cut(s)	1204
PagI	TCATGA	5 cut(s)	43, 171, 262, 369, 1104
PasI	CCCWGGG	1 cut(s)	638
PciI	ACATGT	1 cut(s)	1161
PctI	GAATGC	2 cut(s)	698, 717
PfeI	GAWTC	6 cut(s)	5, 95, 114, 175, 1032, 1289
PinAI	ACCGGT	2 cut(s)	128, 883
PkrI	GCNGC	7 cut(s)	418, 679, 682, 916, 1049, 1086, 1255
PscI	ACATGT	1 cut(s)	1161
Psp6I	CCWGG	2 cut(s)	620, 637
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	2 cut(s)	620, 637
PspN4I	GGNNCC	1 cut(s)	1120
PspPI	GGNCC	1 cut(s)	881
PsrI	GAACNNNNNNTAC	2 cut(s)	767, 799
RsaI	GTAC	4 cut(s)	588, 776, 965, 1301
RsaNI	GTAC	4 cut(s)	587, 775, 964, 1300
RseI	CAYNNNNRTG	3 cut(s)	267, 710, 1204
Rsr2I	CGGWCCG	1 cut(s)	881
RsrII	CGGWCCG	1 cut(s)	881
SaqAI	TTAA	5 cut(s)	209, 375, 597, 609, 1062
SatI	GCNGC	7 cut(s)	417, 678, 681, 915, 1048, 1085, 1254
Sau3AI	GATC	3 cut(s)	189, 201, 1315
Sau96I	GGNCC	1 cut(s)	881
ScrFI	CCNGG	2 cut(s)	622, 639
SfaNI	GCATC	1 cut(s)	999
SfcI	CTRYAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	881
SmiMI	CAYNNNNRTG	3 cut(s)	267, 710, 1204
SmlI	CTYRAG	2 cut(s)	410, 1270
SmoI	CTYRAG	2 cut(s)	410, 1270
Sse9I	AATT	3 cut(s)	210, 907, 1011
SsiI	CCGC	5 cut(s)	75, 195, 512, 677, 1047
SspI	AATATT	1 cut(s)	660
SspMI	CTAG	3 cut(s)	33, 215, 684
StyD4I	CCNGG	2 cut(s)	620, 637
TaaI	ACNGT	7 cut(s)	140, 553, 591, 618, 736, 931, 1039
TaiI	ACGT	2 cut(s)	876, 1301
TaqI	TCGA	1 cut(s)	1042
TasI	AATT	3 cut(s)	210, 907, 1011
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	2 cut(s)	680, 1050
TfiI	GAWTC	6 cut(s)	5, 95, 114, 175, 1032, 1289
Tru1I	TTAA	5 cut(s)	209, 375, 597, 609, 1062
Tru9I	TTAA	5 cut(s)	209, 375, 597, 609, 1062
TscAI	CASTG	7 cut(s)	19, 145, 226, 385, 741, 753, 1011
TseFI	GTSAC	1 cut(s)	591
TseI	GCWGC	5 cut(s)	416, 680, 914, 1084, 1253
Tsp45I	GTSAC	1 cut(s)	591
TspDTI	ATGAA	8 cut(s)	32, 63, 87, 251, 358, 464, 779, 1093
TspGWI	ACGGA	1 cut(s)	894
TspRI	CASTG	7 cut(s)	19, 145, 226, 385, 741, 753, 1011
VpaK11BI	GGWCC	1 cut(s)	881
XapI	RAATTY	1 cut(s)	1011
XbaI	TCTAGA	1 cut(s)	32
XceI	RCATGY	1 cut(s)	1165
XmiI	GTMKAC	1 cut(s)	508
XspI	CTAG	3 cut(s)	33, 215, 684

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.