Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013472

Physical Location & Seq

Genomic Coordinates Reverse (-)

16700490 .. 16702336

Gene Structure 1847 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G40000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1308 bp

ATGGTTGATATGGATTGGAAGAGGAAGATGGTATCATCAGATTTACCAAACTCACCTAAGCTTTCTTCAAAGCTTCACGTAACTATTCCATCACCGTTCAAAATCGTCCCTGTTTCATCTCCGATCTCATGTTCAGCACCTGCTCTTTGCTCTGCTTACGAGCTTTACCTTCGTCTCCCTGAGCTAAGAAAGCTCTGGTCATCTCGTGATTTTCCTCAATGGACATCAGAGCCGATTCTCAAACCAGCTCTTCAAGCTTTGGAGATCAGTTTCAGATTAGTTTTCGCCGTTTGTTCTGATACTAGACCGTACATCAACCACCGTGAATGGAACCGGAGGCTAGATTCTCTCATCACGAAGCAGATCCAGCTTGTAGCAGCGATCTGCGAAGATGAAGAAGAAGAAGGTATATCAGCGGAGGCTCCGGTCGGCGGTGGACGGAGTTCGTTGAGTTTGTTACCGCAGCTAGCTACGTGGAGGAGATCAGAGGCTTTGGGGAAGAAGATCTTATATACGATCGATAACGAGATGAGTCGGTGTAAGTACACGCTCGGACTCGGTGAACAAAACATCGCCGGAAAACCAAATCTCCGGTACGATGCGATTTGCCGACCAAACGAGATCTATAGCCTCAAGGATAATCCATACGCAGATCATATCGATAATCACGAGAATCAAACTCTCTATATCATTCACCAGATCCTCGAATCGTGGATCTACGCATCTGGAAATCTTCTGAATCGAATCGTCTCAAGTATCGAAGAAGAGAAATTCGGAAAAGCTTCAAACGATGTTTACTTGCTGGAGAAGATCTGGAAAATTTTAGCGGAGATTGAAGATCTTCATATGTTGATGGATCCGGAAGATTTTTTGAAATTGAAGAAACAGTTACAGATCAAATCGACGGGTAAAAACGATGCGTTTTGTTTCAGATCTAAAGGATTAGTGGAGATGATGAAGATGTCGAAAGATCTGAGACAGAAAGTACCGGCGGTCTTGGCGGTTGAGGTAGATCCAACCGGAGGACCAAGATTACAAGAGGCGGCGATGAAGCTTTACGCGAGGAAGACAGAGTGCGATAAGATTCATTTGCTTCAGGGGATGCAAGCGGTGGAAGCGGCGGCGAAGAGTTTCTTCTTTGGGTATAGGCAGTTAGTGGCGGCTATGATGGGAAGTGCGGAGATGAACGCGACGGCGAGTCAAGAGTCGTGTGACTCACTGAGTCAGATATTTATGGAGCCGACGTATTTCCCGAGCCTTGACGCGGCAAAGACGTTTCTGGGAGAGTTTTGGAGTCATTTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

435

Amino Acids

49.24

Weight (kDa)

6.3

Isoelectric Point (pI)

58.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hs1pro-1_N	PF07231	1 - 174	9.6e-81	Hs1pro-1 N-terminus
Hs1pro-1_C	PF07014	177 - 433	3.7e-149	Hs1pro-1 protein C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40000
fragaria_vesca	FvH4_7g24150
malus_domestica	MD01G1148800.v1.1 MD07G1215700.v1.1
prunus_persica	Prupe.2G247600_v2.0.a1
pyrus_communis	pycom01g16720 pycom07g19800
rosa_chinensis	RchiOBHm_Chr1g0369681
rosa_laevigata	RLG00000027112
rosa_multiflora	Rmu_sc0001154.1_g000025
rosa_roxburghii	Rroxscaffold_2G00131660 Rroxscaffold_4G00287440
rosa_rugosa	Rorug01G0351800
rosa_samantha	Rh1AG359900 Rh1BG323800 Rh1CG337000 Rh1DG354400
rosa_wichuraiana	Rw1G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	148
Acc36I	ACCTGC	1 cut(s)	148
AccII	CGCG	3 cut(s)	1061, 1190, 1265
AccIII	TCCGGA	1 cut(s)	859
AclWI	GGATC	6 cut(s)	358, 694, 722, 851, 864, 1007
AcsI	RAATTY	2 cut(s)	770, 819
AcuI	CTGAAG	1 cut(s)	1079
AfaI	GTAC	4 cut(s)	311, 545, 596, 987
AfiI	CCNNNNNNNGG	3 cut(s)	431, 1022, 1264
AgsI	TTSAA	7 cut(s)	69, 100, 254, 786, 836, 874, 880
AhdI	GACNNNNNGTC	1 cut(s)	1197
Alw26I	GTCTC	3 cut(s)	179, 754, 970
AlwI	GGATC	6 cut(s)	358, 694, 722, 851, 864, 1007
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	1252
Aor13HI	TCCGGA	1 cut(s)	859
ApeKI	GCWGC	2 cut(s)	377, 463
ApoI	RAATTY	2 cut(s)	770, 819
Asp700I	GAANNNNTTC	3 cut(s)	781, 840, 1130
AspS9I	GGNCC	1 cut(s)	1025
AsuHPI	GGTGA	4 cut(s)	45, 84, 572, 686
AsuNHI	GCTAGC	1 cut(s)	466
AvaI	CYCGRG	1 cut(s)	1252
AvaII	GGWCC	1 cut(s)	1025
BamHI	GGATCC	1 cut(s)	856
BauI	CACGAG	2 cut(s)	204, 668
BbsI	GAAGAC	1 cut(s)	1073
BbvI	GCAGC	2 cut(s)	389, 475
BccI	CCATC	4 cut(s)	22, 97, 847, 1162
BceAI	ACGGC	2 cut(s)	272, 1209
BcoDI	GTCTC	3 cut(s)	179, 754, 970
BfaI	CTAG	3 cut(s)	303, 341, 467
BfmI	CTRYAG	1 cut(s)	625
BfuAI	ACCTGC	1 cut(s)	148
BglII	AGATCT	6 cut(s)	504, 621, 810, 838, 932, 970
BisI	GCNGC	7 cut(s)	378, 464, 1044, 1119, 1122, 1161, 1266
BlsI	GCNGC	7 cut(s)	379, 465, 1045, 1120, 1123, 1162, 1267
Bme18I	GGWCC	1 cut(s)	1025
BmeRI	GACNNNNNGTC	1 cut(s)	1197
BmeT110I	CYCGRG	1 cut(s)	1252
BmgT120I	GGNCC	1 cut(s)	1025
BmiI	GGNNCC	4 cut(s)	332, 423, 858, 1239
BmsI	GCATC	4 cut(s)	589, 731, 907, 1092
BmtI	GCTAGC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	1073
BpmI	CTGGAG	1 cut(s)	824
Bpu10I	CCTNAGC	2 cut(s)	57, 180
BpuEI	CTTGAG	2 cut(s)	617, 736
Bsa29I	ATCGAT	2 cut(s)	519, 660
BsaAI	YACGTR	2 cut(s)	79, 474
BsaWI	WCCGGW	5 cut(s)	333, 424, 591, 859, 1019
BsaXI	ACNNNNNCTCC	4 cut(s)	573, 603, 1229, 1259
Bsc4I	CCNNNNNNNGG	3 cut(s)	431, 1022, 1264
Bse118I	RCCGGY	1 cut(s)	988
BseAI	TCCGGA	1 cut(s)	859
BseCI	ATCGAT	2 cut(s)	519, 660
BseGI	GGATG	1 cut(s)	1107
BseLI	CCNNNNNNNGG	3 cut(s)	431, 1022, 1264
BseMII	CTCAG	3 cut(s)	171, 965, 1211
BseRI	GAGGAG	1 cut(s)	493
BseXI	GCAGC	2 cut(s)	389, 475
Bsh1236I	CGCG	3 cut(s)	1061, 1190, 1265
Bsh1285I	CGRYCG	2 cut(s)	429, 519
BshVI	ATCGAT	2 cut(s)	519, 660
BsiEI	CGRYCG	2 cut(s)	429, 519
BsiHKCI	CYCGRG	1 cut(s)	1252
BsiSI	CCGG	7 cut(s)	334, 425, 576, 592, 860, 989, 1020
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	431, 1022, 1264
BsmAI	GTCTC	3 cut(s)	179, 754, 970
BsmBI	CGTCTC	2 cut(s)	179, 754
BsmFI	GGGAC	1 cut(s)	92
BsoBI	CYCGRG	1 cut(s)	1252
Bsp13I	TCCGGA	1 cut(s)	859
BspCNI	CTCAG	3 cut(s)	172, 966, 1212
BspDI	ATCGAT	2 cut(s)	519, 660
BspEI	TCCGGA	1 cut(s)	859
BspFNI	CGCG	3 cut(s)	1061, 1190, 1265
BspLI	GGNNCC	4 cut(s)	332, 423, 858, 1239
BspMI	ACCTGC	1 cut(s)	148
BspOI	GCTAGC	1 cut(s)	470
BspPI	GGATC	6 cut(s)	358, 694, 722, 851, 864, 1007
BspQI	GCTCTTC	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	988
BssAI	RCCGGY	1 cut(s)	988
BssSI	CACGAG	2 cut(s)	204, 668
Bst2BI	CACGAG	2 cut(s)	204, 668
Bst4CI	ACNGT	4 cut(s)	96, 309, 323, 888
Bst6I	CTCTTC	4 cut(s)	14, 255, 759, 1121
BstBAI	YACGTR	2 cut(s)	79, 474
BstC8I	GCNNGC	2 cut(s)	468, 1107
BstDEI	CTNAG	5 cut(s)	57, 180, 185, 974, 1220
BstF5I	GGATG	1 cut(s)	1107
BstFNI	CGCG	3 cut(s)	1061, 1190, 1265
BstMAI	GTCTC	3 cut(s)	179, 754, 970
BstMCI	CGRYCG	2 cut(s)	429, 519
BstMWI	GCNNNNNNNGC	5 cut(s)	190, 254, 367, 998, 1115
BstSFI	CTRYAG	1 cut(s)	625
BstUI	CGCG	3 cut(s)	1061, 1190, 1265
BstV1I	GCAGC	2 cut(s)	389, 475
BstV2I	GAAGAC	1 cut(s)	1073
Bsu15I	ATCGAT	2 cut(s)	519, 660
BsuTUI	ATCGAT	2 cut(s)	519, 660
BtgZI	GCGATG	2 cut(s)	556, 1061
BtsCI	GGATG	1 cut(s)	1107
BtsIMutI	CAGTG	1 cut(s)	1217
BveI	ACCTGC	1 cut(s)	148
Cac8I	GCNNGC	2 cut(s)	468, 1107
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr10I	RCCGGY	1 cut(s)	988
Cfr13I	GGNCC	1 cut(s)	1025
ClaI	ATCGAT	2 cut(s)	519, 660
CseI	GACGC	1 cut(s)	1271
Csp6I	GTAC	4 cut(s)	310, 544, 595, 986
CviAII	CATG	1 cut(s)	129
CviQI	GTAC	4 cut(s)	310, 544, 595, 986
DdeI	CTNAG	5 cut(s)	57, 180, 185, 974, 1220
DriI	GACNNNNNGTC	1 cut(s)	1197
Eam1104I	CTCTTC	4 cut(s)	14, 255, 759, 1121
Eam1105I	GACNNNNNGTC	1 cut(s)	1197
EarI	CTCTTC	4 cut(s)	14, 255, 759, 1121
Eco47I	GGWCC	1 cut(s)	1025
Eco57I	CTGAAG	1 cut(s)	1079
Eco88I	CYCGRG	1 cut(s)	1252
Esp3I	CGTCTC	2 cut(s)	179, 754
FaeI	CATG	1 cut(s)	132
FalI	AAGNNNNNCTT	4 cut(s)	491, 523, 1118, 1150
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	1 cut(s)	128
FauNDI	CATATG	1 cut(s)	846
Fnu4HI	GCNGC	7 cut(s)	378, 464, 1044, 1119, 1122, 1161, 1266
FokI	GGATG	1 cut(s)	1114
Fsp4HI	GCNGC	7 cut(s)	378, 464, 1044, 1119, 1122, 1161, 1266
FspBI	CTAG	3 cut(s)	303, 341, 467
GluI	GCNGC	7 cut(s)	378, 464, 1044, 1119, 1122, 1161, 1266
GsuI	CTGGAG	1 cut(s)	824
HapII	CCGG	7 cut(s)	334, 425, 576, 592, 860, 989, 1020
HgaI	GACGC	1 cut(s)	1271
Hin1II	CATG	1 cut(s)	132
HindIII	AAGCTT	5 cut(s)	59, 71, 255, 780, 1052
HpaII	CCGG	7 cut(s)	334, 425, 576, 592, 860, 989, 1020
HphI	GGTGA	4 cut(s)	45, 84, 572, 686
Hpy166II	GTNNAC	4 cut(s)	437, 546, 563, 796
Hpy188III	TCNNGA	8 cut(s)	206, 355, 668, 726, 814, 860, 1202, 1252
Hpy8I	GTNNAC	4 cut(s)	437, 546, 563, 796
Hpy99I	CGWCG	3 cut(s)	907, 1195, 1246
HpyAV	CCTTC	2 cut(s)	179, 398
HpyCH4III	ACNGT	4 cut(s)	96, 309, 323, 888
HpyCH4IV	ACGT	4 cut(s)	78, 473, 1244, 1274
HpyCH4V	TGCA	1 cut(s)	1105
HpyF10VI	GCNNNNNNNGC	5 cut(s)	190, 254, 367, 998, 1115
HpyF3I	CTNAG	5 cut(s)	57, 180, 185, 974, 1220
HpySE526I	ACGT	4 cut(s)	78, 473, 1244, 1274
Hsp92II	CATG	1 cut(s)	132
Kpn2I	TCCGGA	1 cut(s)	859
LguI	GCTCTTC	1 cut(s)	255
LmnI	GCTCC	2 cut(s)	427, 1237
Lsp1109I	GCAGC	2 cut(s)	389, 475
LweI	GCATC	4 cut(s)	589, 731, 907, 1092
MaeI	CTAG	3 cut(s)	303, 341, 467
MaeII	ACGT	4 cut(s)	78, 473, 1244, 1274
MaeIII	GTNAC	4 cut(s)	79, 456, 888, 1211
MluCI	AATT	3 cut(s)	770, 819, 875
MlyI	GAGTC	7 cut(s)	541, 549, 1207, 1208, 1214, 1231, 1303
MmeI	TCCRAC	1 cut(s)	1040
MroI	TCCGGA	1 cut(s)	859
MroXI	GAANNNNTTC	3 cut(s)	781, 840, 1130
MspA1I	CMGCKG	1 cut(s)	416
MspI	CCGG	7 cut(s)	334, 425, 576, 592, 860, 989, 1020
MvnI	CGCG	3 cut(s)	1061, 1190, 1265
MwoI	GCNNNNNNNGC	5 cut(s)	190, 254, 367, 998, 1115
NdeI	CATATG	1 cut(s)	846
NheI	GCTAGC	1 cut(s)	466
NlaIII	CATG	1 cut(s)	132
NlaIV	GGNNCC	4 cut(s)	332, 423, 858, 1239
NmuCI	GTSAC	1 cut(s)	1211
PaqCI	CACCTGC	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	255
PcsI	WCGNNNNNNNCGW	2 cut(s)	666, 1250
PdmI	GAANNNNTTC	3 cut(s)	781, 840, 1130
PfeI	GAWTC	7 cut(s)	235, 344, 673, 707, 739, 744, 1084
PkrI	GCNGC	7 cut(s)	379, 465, 1045, 1120, 1123, 1162, 1267
Ple19I	CGATCG	1 cut(s)	519
PleI	GAGTC	7 cut(s)	540, 549, 1206, 1208, 1213, 1230, 1302
PpsI	GAGTC	7 cut(s)	540, 549, 1206, 1208, 1213, 1230, 1302
Ppu21I	YACGTR	2 cut(s)	79, 474
PspN4I	GGNNCC	4 cut(s)	332, 423, 858, 1239
PspPI	GGNCC	1 cut(s)	1025
PstNI	CAGNNNCTG	1 cut(s)	140
PvuI	CGATCG	1 cut(s)	519
RsaI	GTAC	4 cut(s)	311, 545, 596, 987
RsaNI	GTAC	4 cut(s)	310, 544, 595, 986
SapI	GCTCTTC	1 cut(s)	255
SatI	GCNGC	7 cut(s)	378, 464, 1044, 1119, 1122, 1161, 1266
Sau96I	GGNCC	1 cut(s)	1025
SchI	GAGTC	7 cut(s)	541, 549, 1207, 1208, 1214, 1231, 1303
SfaNI	GCATC	4 cut(s)	589, 731, 907, 1092
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	1025
SmlI	CTYRAG	2 cut(s)	632, 751
SmoI	CTYRAG	2 cut(s)	632, 751
Sse9I	AATT	3 cut(s)	770, 819, 875
SspMI	CTAG	3 cut(s)	303, 341, 467
TaaI	ACNGT	4 cut(s)	96, 309, 323, 888
TaiI	ACGT	4 cut(s)	81, 476, 1247, 1277
TaqI	TCGA	7 cut(s)	519, 660, 705, 742, 759, 902, 965
TasI	AATT	3 cut(s)	770, 819, 875
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	5 cut(s)	1046, 1121, 1124, 1163, 1268
TfiI	GAWTC	7 cut(s)	235, 344, 673, 707, 739, 744, 1084
TscAI	CASTG	1 cut(s)	1224
TseFI	GTSAC	1 cut(s)	1211
TseI	GCWGC	2 cut(s)	377, 463
Tsp45I	GTSAC	1 cut(s)	1211
TspDTI	ATGAA	7 cut(s)	105, 408, 833, 971, 1064, 1076, 1199
TspGWI	ACGGA	1 cut(s)	454
TspRI	CASTG	1 cut(s)	1224
VpaK11BI	GGWCC	1 cut(s)	1025
XapI	RAATTY	2 cut(s)	770, 819
XmnI	GAANNNNTTC	3 cut(s)	781, 840, 1130
XspI	CTAG	3 cut(s)	303, 341, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.