Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001154.1

Orthogroup ID

OG0013472

Physical Location & Seq

Genomic Coordinates Reverse (-)

151307 .. 152719

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001154.1_g000025.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

atggtctcctcagatatacccagcaagtcccccaggctctccaacaagctccaccacctctccatccccgcctccttccgcgccgcccaaatccagtccgacatttcccccgcctccgagcaggcctgctccacctacgagcactacctccgcctccccgagctccgcaagctctggtgctccaccgacttccccgcctggaaaagcgagtccattctcaagcccgctctccaagctctcgagatctctttccggttcgtctccaccgtcctctccgatccgaggccctacgccaaccggagagagtggcgccgccgcctcgagtcgcttattattagtcaggttgagctcatcgctttgttgatcgaggacgatgaggaggacagcgagacgcgcggcgcggcgccgatcgttgatctgagcacgtccggcggcgcgttggctcgcgacgggagcttggccgaggtgtggaggggctccggcgagagcaccgtggtgagccgcaccagcgaggccagcctgctgcctcggctcgccgcgtggcagaagtcggagtcgatggcgcagaagatcctgtactcgatcgagtgcgagatgcggagctgtccgtacactctaggactcggcgagccgaacctcgccggaaaaccgaacctggattacgacgccgtttgcaagccgtcggagctgcatttgctaaagaggagcccgtacgacagccacatcgacaaccacgagaaccaggcggtgtacaccacgcaccaggtcctggagtcgtgggtgttcgcctgccacgagctcctcaagcgcgtgaaccgccgcgtcgagtccagcgaattcgaaaaggccgccaccgactgtttcctgatcgagcgcgtctggaagcttctggcggaaatcgaggacctccacctgttaatggacccggaggactttcttcggctcaagaaccagttgaagatcaagacggtggacgatacggagtcgttttgcttcaggtcgaagggactggtggagatcacaaggctgtgtaaggacttgaagcacaaggttccgaacgtgctgggagtggaggtggacccgatgggcgggccgaggatccaggaggcggcgatgaggctctactcggagaaaaccgggtcggagaagatccatctccttcaggcgatgcagactatcgaatcggcggtgaaacgtttcttcttcgcgtacaagcaggtgctagtggtgttgatggggagcttggaggcgaaagggaaccgggtcgtggtgagcccggagtccggcgacgcgctgagtcagatattcctggagccgacgtattttccgagcttggacgccgcgaagacgtttctgggggacggtttgagtcacgaaaacgtttcggagagacggacacggaggactaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

470

Amino Acids

53.09

Weight (kDa)

6.12

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40000
fragaria_vesca	FvH4_7g24150
malus_domestica	MD01G1148800.v1.1 MD07G1215700.v1.1
prunus_persica	Prupe.2G247600_v2.0.a1
pyrus_communis	pycom01g16720 pycom07g19800
rosa_chinensis	RchiOBHm_Chr1g0369681
rosa_laevigata	RLG00000027112
rosa_multiflora	Rmu_sc0001154.1_g000025
rosa_roxburghii	Rroxscaffold_2G00131660 Rroxscaffold_4G00287440
rosa_rugosa	Rorug01G0351800
rosa_samantha	Rh1AG359900 Rh1BG323800 Rh1CG337000 Rh1DG354400
rosa_wichuraiana	Rw1G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1207
Acc36I	ACCTGC	1 cut(s)	1207
AccB1I	GGYRCC	2 cut(s)	309, 403
AccB7I	CCANNNNNTGG	1 cut(s)	769
AccBSI	CCGCTC	1 cut(s)	227
AclI	AACGTT	2 cut(s)	1195, 1380
AclWI	GGATC	5 cut(s)	272, 565, 1093, 1106, 1144
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	836
AcuI	CTGAAG	2 cut(s)	979, 1145
AcyI	GRCGYC	4 cut(s)	310, 404, 666, 1338
AfaI	GTAC	5 cut(s)	578, 611, 713, 752, 1211
AfiI	CCNNNNNNNGG	8 cut(s)	282, 468, 769, 919, 1088, 1108, 1267, 1283
AgsI	TTSAA	2 cut(s)	958, 1042
AjiI	CACGTC	1 cut(s)	426
AjnI	CCWGG	8 cut(s)	32, 197, 654, 741, 762, 768, 1101, 1308
AleI	CACNNNNGTG	1 cut(s)	494
Alw21I	GWGCWC	7 cut(s)	144, 165, 182, 351, 425, 491, 801
Alw26I	GTCTC	4 cut(s)	10, 265, 383, 1384
AlwI	GGATC	5 cut(s)	272, 565, 1093, 1106, 1144
AlwNI	CAGNNNCTG	1 cut(s)	769
Ama87I	CYCGRG	3 cut(s)	158, 239, 320
AoxI	GGCC	6 cut(s)	123, 284, 459, 513, 846, 1091
ApeKI	GCWGC	2 cut(s)	523, 688
ApoI	RAATTY	1 cut(s)	836
Asp700I	GAANNNNTTC	1 cut(s)	1196
AspS9I	GGNCC	6 cut(s)	285, 766, 904, 922, 1078, 1091
AsuC2I	CCSGG	4 cut(s)	926, 1138, 1262, 1277
AsuHPI	GGTGA	3 cut(s)	508, 1201, 1282
AsuII	TTCGAA	1 cut(s)	840
AvaI	CYCGRG	3 cut(s)	158, 239, 320
AvaII	GGWCC	4 cut(s)	766, 904, 922, 1078
BamHI	GGATCC	1 cut(s)	1098
BanI	GGYRCC	2 cut(s)	309, 403
BanII	GRGCYC	6 cut(s)	165, 351, 479, 710, 801, 1277
BarI	GAAGNNNNNNTAC	2 cut(s)	560, 592
BauI	CACGAG	2 cut(s)	734, 794
BbsI	GAAGAC	1 cut(s)	1352
Bbv12I	GWGCWC	7 cut(s)	144, 165, 182, 351, 425, 491, 801
BbvI	GCAGC	2 cut(s)	510, 675
BccI	CCATC	5 cut(s)	71, 553, 1078, 1161, 1228
BceAI	ACGGC	2 cut(s)	653, 664
BciT130I	CCWGG	8 cut(s)	34, 199, 656, 743, 764, 770, 1103, 1310
BcnI	CCSGG	4 cut(s)	926, 1138, 1262, 1277
BcoDI	GTCTC	4 cut(s)	10, 265, 383, 1384
BfaI	CTAG	3 cut(s)	617, 1223, 1407
BfoI	RGCGCY	2 cut(s)	313, 407
BfuAI	ACCTGC	1 cut(s)	1207
BglII	AGATCT	1 cut(s)	243
Bme18I	GGWCC	4 cut(s)	766, 904, 922, 1078
BmeT110I	CYCGRG	3 cut(s)	158, 239, 320
BmgBI	CACGTC	1 cut(s)	426
BmgT120I	GGNCC	6 cut(s)	285, 766, 904, 922, 1078, 1091
BmsI	GCATC	2 cut(s)	585, 1158
BpiI	GAAGAC	1 cut(s)	1352
BpmI	CTGGAG	2 cut(s)	791, 1331
Bpu14I	TTCGAA	1 cut(s)	840
BpuEI	CTTGAG	3 cut(s)	203, 788, 929
BpuMI	CCSGG	4 cut(s)	926, 1138, 1262, 1277
BsaHI	GRCGYC	4 cut(s)	310, 404, 666, 1338
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	6 cut(s)	32, 281, 462, 492, 527, 1094
BsaWI	WCCGGW	2 cut(s)	252, 297
BsaXI	ACNNNNNCTCC	6 cut(s)	44, 74, 1059, 1089, 1304, 1334
Bsc4I	CCNNNNNNNGG	8 cut(s)	282, 468, 769, 919, 1088, 1108, 1267, 1283
Bse1I	ACTGG	3 cut(s)	94, 952, 1014
BseBI	CCWGG	8 cut(s)	34, 199, 656, 743, 764, 770, 1103, 1310
BseDI	CCNNGG	6 cut(s)	32, 281, 462, 492, 527, 1094
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	8 cut(s)	282, 468, 769, 919, 1088, 1108, 1267, 1283
BseMII	CTCAG	3 cut(s)	24, 410, 1286
BseNI	ACTGG	3 cut(s)	94, 952, 1014
BseRI	GAGGAG	3 cut(s)	392, 718, 791
BseXI	GCAGC	2 cut(s)	510, 675
BseYI	CCCAGC	2 cut(s)	20, 1063
Bsh1285I	CGRYCG	2 cut(s)	411, 585
BshFI	GGCC	6 cut(s)	125, 286, 461, 515, 848, 1093
BshNI	GGYRCC	2 cut(s)	309, 403
BsiEI	CGRYCG	2 cut(s)	411, 585
BsiHKAI	GWGCWC	7 cut(s)	144, 165, 182, 351, 425, 491, 801
BsiHKCI	CYCGRG	3 cut(s)	158, 239, 320
BsiWI	CGTACG	1 cut(s)	711
BslFI	GGGAC	3 cut(s)	13, 1020, 1373
BslI	CCNNNNNNNGG	8 cut(s)	282, 468, 769, 919, 1088, 1108, 1267, 1283
BsmAI	GTCTC	4 cut(s)	10, 265, 383, 1384
BsmBI	CGTCTC	3 cut(s)	265, 383, 1384
BsmFI	GGGAC	3 cut(s)	13, 1020, 1373
BsnI	GGCC	6 cut(s)	125, 286, 461, 515, 848, 1093
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	3 cut(s)	158, 239, 320
Bsp119I	TTCGAA	1 cut(s)	840
Bsp1407I	TGTACA	1 cut(s)	750
Bsp68I	TCGCGA	1 cut(s)	447
BspANI	GGCC	6 cut(s)	125, 286, 461, 515, 848, 1093
BspCNI	CTCAG	3 cut(s)	23, 411, 1287
BspMI	ACCTGC	1 cut(s)	1207
BspPI	GGATC	5 cut(s)	272, 565, 1093, 1106, 1144
BspT104I	TTCGAA	1 cut(s)	840
BspT107I	GGYRCC	2 cut(s)	309, 403
BspTNI	GGTCTC	1 cut(s)	10
BsrBI	CCGCTC	1 cut(s)	227
BsrGI	TGTACA	1 cut(s)	750
BsrI	ACTGG	3 cut(s)	94, 952, 1014
BssECI	CCNNGG	6 cut(s)	32, 281, 462, 492, 527, 1094
BssNI	GRCGYC	4 cut(s)	310, 404, 666, 1338
BssSI	CACGAG	2 cut(s)	734, 794
Bst2BI	CACGAG	2 cut(s)	734, 794
Bst2UI	CCWGG	8 cut(s)	34, 199, 656, 743, 764, 770, 1103, 1310
Bst4CI	ACNGT	5 cut(s)	268, 493, 860, 970, 1364
BstACI	GRCGYC	4 cut(s)	310, 404, 666, 1338
BstAUI	TGTACA	1 cut(s)	750
BstBI	TTCGAA	1 cut(s)	840
BstDEI	CTNAG	3 cut(s)	10, 419, 1295
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	1 cut(s)	63
BstH2I	RGCGCY	2 cut(s)	313, 407
BstMAI	GTCTC	4 cut(s)	10, 265, 383, 1384
BstMCI	CGRYCG	2 cut(s)	411, 585
BstNI	CCWGG	8 cut(s)	34, 199, 656, 743, 764, 770, 1103, 1310
BstV1I	GCAGC	2 cut(s)	510, 675
BstV2I	GAAGAC	1 cut(s)	1352
BstX2I	RGATCY	4 cut(s)	243, 570, 1098, 1149
BstYI	RGATCY	4 cut(s)	243, 570, 1098, 1149
BsuRI	GGCC	6 cut(s)	125, 286, 461, 515, 848, 1093
BtgI	CCRYGG	1 cut(s)	492
BtgZI	GCGATG	3 cut(s)	337, 1127, 1181
BtrI	CACGTC	1 cut(s)	426
BtsCI	GGATG	1 cut(s)	63
BtuMI	TCGCGA	1 cut(s)	447
BveI	ACCTGC	1 cut(s)	1207
CaiI	CAGNNNCTG	1 cut(s)	769
Cfr13I	GGNCC	6 cut(s)	285, 766, 904, 922, 1078, 1091
CseI	GACGC	6 cut(s)	400, 674, 811, 865, 1298, 1346
CsiI	ACCWGGT	1 cut(s)	762
Csp6I	GTAC	5 cut(s)	577, 610, 712, 751, 1210
CviQI	GTAC	5 cut(s)	577, 610, 712, 751, 1210
DdeI	CTNAG	3 cut(s)	10, 419, 1295
DinI	GGCGCC	2 cut(s)	311, 405
EaeI	YGGCCR	1 cut(s)	459
EciI	GGCGGA	2 cut(s)	140, 908
Ecl136II	GAGCTC	3 cut(s)	163, 349, 799
Eco147I	AGGCCT	1 cut(s)	125
Eco24I	GRGCYC	6 cut(s)	165, 351, 479, 710, 801, 1277
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	4 cut(s)	766, 904, 922, 1078
Eco53kI	GAGCTC	3 cut(s)	163, 349, 799
Eco57I	CTGAAG	2 cut(s)	979, 1145
Eco88I	CYCGRG	3 cut(s)	158, 239, 320
EcoICRI	GAGCTC	3 cut(s)	163, 349, 799
EcoO109I	RGGNCCY	3 cut(s)	285, 766, 904
EcoRI	GAATTC	1 cut(s)	836
EcoRII	CCWGG	8 cut(s)	32, 197, 654, 741, 762, 768, 1101, 1308
EcoT38I	GRGCYC	6 cut(s)	165, 351, 479, 710, 801, 1277
EgeI	GGCGCC	2 cut(s)	311, 405
EheI	GGCGCC	2 cut(s)	311, 405
Esp3I	CGTCTC	3 cut(s)	265, 383, 1384
FaiI	YATR	1 cut(s)	17
FaqI	GGGAC	3 cut(s)	13, 1020, 1373
FauI	CCCGC	5 cut(s)	76, 118, 202, 232, 1082
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	6 cut(s)	165, 351, 479, 710, 801, 1277
FspBI	CTAG	3 cut(s)	617, 1223, 1407
GsaI	CCCAGC	2 cut(s)	24, 1067
GsuI	CTGGAG	2 cut(s)	791, 1331
HaeII	RGCGCY	2 cut(s)	313, 407
HaeIII	GGCC	6 cut(s)	125, 286, 461, 515, 848, 1093
HgaI	GACGC	6 cut(s)	400, 674, 811, 865, 1298, 1346
Hin1I	GRCGYC	4 cut(s)	310, 404, 666, 1338
HindIII	AAGCTT	1 cut(s)	884
HphI	GGTGA	3 cut(s)	508, 1201, 1282
Hpy166II	GTNNAC	6 cut(s)	612, 751, 753, 814, 973, 1078
Hpy188III	TCNNGA	8 cut(s)	239, 241, 446, 865, 880, 946, 964, 1373
Hpy8I	GTNNAC	6 cut(s)	612, 751, 753, 814, 973, 1078
Hpy99I	CGWCG	6 cut(s)	452, 668, 685, 827, 1292, 1321
HpyAV	CCTTC	3 cut(s)	85, 997, 1169
HpyCH4III	ACNGT	5 cut(s)	268, 493, 860, 970, 1364
HpyCH4IV	ACGT	6 cut(s)	425, 1059, 1195, 1319, 1349, 1380
HpyCH4V	TGCA	3 cut(s)	675, 691, 1171
HpyF3I	CTNAG	3 cut(s)	10, 419, 1295
HpySE526I	ACGT	6 cut(s)	425, 1059, 1195, 1319, 1349, 1380
Hsp92I	GRCGYC	4 cut(s)	310, 404, 666, 1338
KasI	GGCGCC	2 cut(s)	309, 403
Lsp1109I	GCAGC	2 cut(s)	510, 675
LweI	GCATC	2 cut(s)	585, 1158
MabI	ACCWGGT	1 cut(s)	762
MaeI	CTAG	3 cut(s)	617, 1223, 1407
MaeII	ACGT	6 cut(s)	425, 1059, 1195, 1319, 1349, 1380
MaeIII	GTNAC	1 cut(s)	1370
MbiI	CCGCTC	1 cut(s)	227
MboII	GAAGA	7 cut(s)	580, 929, 970, 1159, 1192, 1195, 1357
MflI	RGATCY	4 cut(s)	243, 570, 1098, 1149
MluCI	AATT	1 cut(s)	836
Mly113I	GGCGCC	2 cut(s)	310, 404
MmeI	TCCRAC	5 cut(s)	66, 123, 531, 663, 1122
MroXI	GAANNNNTTC	1 cut(s)	1196
MseI	TTAA	1 cut(s)	917
MslI	CAYNNNNRTG	1 cut(s)	494
MteI	GCGCNGCGC	2 cut(s)	397, 402
MvaI	CCWGG	8 cut(s)	34, 199, 656, 743, 764, 770, 1103, 1310
NarI	GGCGCC	2 cut(s)	310, 404
NciI	CCSGG	4 cut(s)	926, 1138, 1262, 1277
NmeAIII	GCCGAG	4 cut(s)	487, 508, 603, 1119
NmuCI	GTSAC	1 cut(s)	1370
NruI	TCGCGA	1 cut(s)	447
NspV	TTCGAA	1 cut(s)	840
OliI	CACNNNNGTG	1 cut(s)	494
PaeR7I	CTCGAG	2 cut(s)	239, 320
PaqCI	CACCTGC	1 cut(s)	1207
PceI	AGGCCT	1 cut(s)	125
PcsI	WCGNNNNNNNCGW	5 cut(s)	264, 732, 792, 831, 1325
PdmI	GAANNNNTTC	1 cut(s)	1196
PfeI	GAWTC	1 cut(s)	1181
Pfl23II	CGTACG	1 cut(s)	711
PflMI	CCANNNNNTGG	1 cut(s)	769
PfoI	TCCNGGA	3 cut(s)	768, 1101, 1308
Ple19I	CGATCG	2 cut(s)	411, 585
PluTI	GGCGCC	2 cut(s)	313, 407
PpuMI	RGGWCCY	2 cut(s)	766, 904
Psp124BI	GAGCTC	3 cut(s)	165, 351, 801
Psp1406I	AACGTT	2 cut(s)	1195, 1380
Psp5II	RGGWCCY	2 cut(s)	766, 904
Psp6I	CCWGG	8 cut(s)	32, 197, 654, 741, 762, 768, 1101, 1308
PspFI	CCCAGC	2 cut(s)	20, 1063
PspGI	CCWGG	8 cut(s)	32, 197, 654, 741, 762, 768, 1101, 1308
PspLI	CGTACG	1 cut(s)	711
PspPI	GGNCC	6 cut(s)	285, 766, 904, 922, 1078, 1091
PspPPI	RGGWCCY	2 cut(s)	766, 904
PspXI	VCTCGAGB	1 cut(s)	320
PsrI	GAACNNNNNNTAC	2 cut(s)	644, 676
PstNI	CAGNNNCTG	1 cut(s)	769
PsuI	RGATCY	4 cut(s)	243, 570, 1098, 1149
PvuI	CGATCG	2 cut(s)	411, 585
RruI	TCGCGA	1 cut(s)	447
RsaI	GTAC	5 cut(s)	578, 611, 713, 752, 1211
RsaNI	GTAC	5 cut(s)	577, 610, 712, 751, 1210
RseI	CAYNNNNRTG	1 cut(s)	494
SacI	GAGCTC	3 cut(s)	165, 351, 801
SaqAI	TTAA	1 cut(s)	917
Sau96I	GGNCC	6 cut(s)	285, 766, 904, 922, 1078, 1091
SexAI	ACCWGGT	1 cut(s)	762
SfaNI	GCATC	2 cut(s)	585, 1158
SfoI	GGCGCC	2 cut(s)	311, 405
Sfr274I	CTCGAG	2 cut(s)	239, 320
SfuI	TTCGAA	1 cut(s)	840
SinI	GGWCC	4 cut(s)	766, 904, 922, 1078
SlaI	CTCGAG	2 cut(s)	239, 320
SmiMI	CAYNNNNRTG	1 cut(s)	494
SmlI	CTYRAG	5 cut(s)	218, 239, 320, 803, 944
SmoI	CTYRAG	5 cut(s)	218, 239, 320, 803, 944
Sse9I	AATT	1 cut(s)	836
SseBI	AGGCCT	1 cut(s)	125
SspDI	GGCGCC	2 cut(s)	309, 403
SspMI	CTAG	3 cut(s)	617, 1223, 1407
SstI	GAGCTC	3 cut(s)	165, 351, 801
StuI	AGGCCT	1 cut(s)	125
TaaI	ACNGT	5 cut(s)	268, 493, 860, 970, 1364
TaiI	ACGT	6 cut(s)	428, 1062, 1198, 1322, 1352, 1383
TasI	AATT	1 cut(s)	836
TatI	WGTACW	2 cut(s)	576, 750
TfiI	GAWTC	1 cut(s)	1181
Tru1I	TTAA	1 cut(s)	917
Tru9I	TTAA	1 cut(s)	917
TseFI	GTSAC	1 cut(s)	1370
TseI	GCWGC	2 cut(s)	523, 688
Tsp45I	GTSAC	1 cut(s)	1370
TspGWI	ACGGA	3 cut(s)	597, 995, 1408
Van91I	CCANNNNNTGG	1 cut(s)	769
VpaK11BI	GGWCC	4 cut(s)	766, 904, 922, 1078
XapI	RAATTY	1 cut(s)	836
XhoI	CTCGAG	2 cut(s)	239, 320
XmnI	GAANNNNTTC	1 cut(s)	1196
XspI	CTAG	3 cut(s)	617, 1223, 1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.