Rh1AG359900

Hs1pro-1 N-terminus

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013472
Physical Location & Seq
Reverse (-)
59494257 .. 59496017
1761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG359900.1

Sequence Viewer

Length: 1440 bp
ATGGTTGATTTGGATTGGAAAGCAAAAATGGTCTCCTCAGATATACCCAGCAAGTCCCCCAGGCTCTCCAACAAGCTCCACCACCTCTCCATCCCCGCCTCCTTCCGCGCCGCCCAAATCCAGTCCGACATTTCCCCCGCCTCCGAGCAGGCCTGCTCCACCTACGAGCACTACCTCCGCCTCCCCGAGCTCCGCAAGCTCTGGTGCTCCACCGACTTCCCCGCCTGGAAAAGCGAGTCCATTCTCAAGCCCGCTCTCCAAGCTCTCGAGATCTCTTTCCGGTTCGTCTCCACCGTCCTCTCCGATCCGAGGCCCTACGCCAACCGGAGAGAGTGGCGCCGCCGCCTCGAGTCGCTTATTATTAGTCAGGTTGAGCTCATCGCTTTGTTGATCGAGGACGATGAGGAGGACAGCGAGACGCGCGGCGCGGCGCCGATCGTTGATCTGAGCACGTCCGGCGGCGCCTTGGCTCGCGACGGGAGCTTGGCCGAGGTGTGGAGGGGCTCCGGCGAGAGCACCGTGGTGAGCCGCACCAGCGAGGCCAGCCTGCTGCCTCGGCTCGCCGCGTGGCAGAAGTCGGAGTCGATGGCGCAGAAGATCCTGTACTCGATCGAGTGCGAGATGCGGAGCTGCCCGTACACTCTAGGACTCGGCGAGCCGAACCTCGCCGGAAAACCGAACCTGGATTACGACGCCGTTTGCAAGCCGTCGGAGCTGCATTTGCTAAAGAGGAGCCCGTACGACAGCCACATCGACAACCACGAGAACCAGGCGGTGTACACCACGCACCAGGTCCTGGAGTCGTGGGTGTTCGCCTGCCACGAGCTTCTCAAGCGCGTGAACCGCCGCGTCGAGTCCAGCGAATTCGAGAAGGCCGCCACCGACTGTTACCTGATCGAGCGCGTCTGGAAGCTTCTGGCGGAAATCGAGGACCTCCACCTGTTAATGGACCCGGAGGACTTTCTTCGGCTCAAGAACCAGTTGAAGATCAAGACGGTGGACGATACGGAGTCGTTTTGCTTCAGGTCGAAGGGACTGGTGGAGATCACAAGGCTGTGTAAGGACTTGAAGCACAAGGTTCCGAACGTGCTGGGAGTGGAGGTGGACCCGATGGGCGGGCCGAGGATCCAGGAGGCGGCGATGAGGCTCTACTCGGAGAAAACCGGGTCGGAGAAGATCCATCTCCTTCAGGCGATGCAGACTATAGAATCGGCGGTGAAACGTTTCTTCTTCGCGTACAAGCAGGTGCTAGTGGTGTTGATGGGGAGCTTGGAGGCGAAAGGGAACCGGGTCGTGGTGAGCCCGGAGTCCGGCGACGCGCTGAGTCAGATATTCCTGGAGCCGACGTATTTTCCGAGCTTGGACGCCGCGAAGACGTTTCTGGGGGACGGTTTGAGTCACGAAAACGTTTCGGAGAGACGGACGCGGAGGACTAGGTAG

Protein Analysis

479

Amino Acids

54.2

Weight (kDa)

6.12

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Hs1pro-1_N PF07231 1 - 205 9.3e-83 Hs1pro-1 N-terminus
Hs1pro-1_C PF07014 208 - 463 2.1e-134 Hs1pro-1 protein C-terminus
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40000
fragaria_vesca FvH4_7g24150
malus_domestica MD01G1148800.v1.1 MD07G1215700.v1.1
prunus_persica Prupe.2G247600_v2.0.a1
pyrus_communis pycom01g16720 pycom07g19800
rosa_chinensis RchiOBHm_Chr1g0369681
rosa_laevigata RLG00000027112
rosa_multiflora Rmu_sc0001154.1_g000025
rosa_roxburghii Rroxscaffold_2G00131660 Rroxscaffold_4G00287440
rosa_rugosa Rorug01G0351800
rosa_samantha Rh1AG359900 Rh1BG323800 Rh1CG337000 Rh1DG354400
rosa_wichuraiana Rw1G031710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1234
Acc36I ACCTGC 1 cut(s) 1234
AccB1I GGYRCC 3 cut(s) 336, 430, 461
AccB7I CCANNNNNTGG 1 cut(s) 796
AccBSI CCGCTC 1 cut(s) 254
AclI AACGTT 2 cut(s) 1222, 1407
AclWI GGATC 5 cut(s) 299, 592, 1120, 1133, 1171
AcoI YGGCCR 1 cut(s) 486
AcsI RAATTY 1 cut(s) 863
AcuI CTGAAG 2 cut(s) 1006, 1172
AcyI GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
AfaI GTAC 5 cut(s) 605, 638, 740, 779, 1238
AfiI CCNNNNNNNGG 8 cut(s) 309, 495, 796, 946, 1115, 1135, 1294, 1310
AgsI TTSAA 2 cut(s) 985, 1069
AjiI CACGTC 1 cut(s) 453
AjnI CCWGG 8 cut(s) 59, 224, 681, 768, 789, 795, 1128, 1335
AleI CACNNNNGTG 1 cut(s) 521
Alw21I GWGCWC 6 cut(s) 171, 192, 209, 378, 452, 518
Alw26I GTCTC 4 cut(s) 37, 292, 410, 1411
AlwI GGATC 5 cut(s) 299, 592, 1120, 1133, 1171
AlwNI CAGNNNCTG 1 cut(s) 796
Ama87I CYCGRG 3 cut(s) 185, 266, 347
AoxI GGCC 6 cut(s) 150, 311, 486, 540, 873, 1118
ApeKI GCWGC 3 cut(s) 550, 630, 715
ApoI RAATTY 1 cut(s) 863
Asp700I GAANNNNTTC 1 cut(s) 1223
AspS9I GGNCC 6 cut(s) 312, 793, 931, 949, 1105, 1118
AsuC2I CCSGG 4 cut(s) 953, 1165, 1289, 1304
AsuHPI GGTGA 3 cut(s) 535, 1228, 1309
AvaI CYCGRG 3 cut(s) 185, 266, 347
AvaII GGWCC 4 cut(s) 793, 931, 949, 1105
BamHI GGATCC 1 cut(s) 1125
BanI GGYRCC 3 cut(s) 336, 430, 461
BanII GRGCYC 5 cut(s) 192, 378, 506, 737, 1304
BarI GAAGNNNNNNTAC 2 cut(s) 587, 619
BauI CACGAG 2 cut(s) 761, 821
BbsI GAAGAC 1 cut(s) 1379
Bbv12I GWGCWC 6 cut(s) 171, 192, 209, 378, 452, 518
BbvI GCAGC 3 cut(s) 537, 617, 702
BccI CCATC 5 cut(s) 98, 580, 1105, 1188, 1255
BceAI ACGGC 2 cut(s) 680, 691
BciT130I CCWGG 8 cut(s) 61, 226, 683, 770, 791, 797, 1130, 1337
BcnI CCSGG 4 cut(s) 953, 1165, 1289, 1304
BcoDI GTCTC 4 cut(s) 37, 292, 410, 1411
BfaI CTAG 3 cut(s) 644, 1250, 1434
BfmI CTRYAG 1 cut(s) 1203
BfoI RGCGCY 3 cut(s) 340, 434, 465
BfuAI ACCTGC 1 cut(s) 1234
BglII AGATCT 1 cut(s) 270
Bme18I GGWCC 4 cut(s) 793, 931, 949, 1105
BmeT110I CYCGRG 3 cut(s) 185, 266, 347
BmgBI CACGTC 1 cut(s) 453
BmgT120I GGNCC 6 cut(s) 312, 793, 931, 949, 1105, 1118
BmsI GCATC 2 cut(s) 612, 1185
BpiI GAAGAC 1 cut(s) 1379
BpmI CTGGAG 2 cut(s) 818, 1358
BpuEI CTTGAG 3 cut(s) 230, 815, 956
BpuMI CCSGG 4 cut(s) 953, 1165, 1289, 1304
BsaHI GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
BsaI GGTCTC 1 cut(s) 37
BsaJI CCNNGG 7 cut(s) 59, 308, 465, 489, 519, 554, 1121
BsaWI WCCGGW 2 cut(s) 279, 324
BsaXI ACNNNNNCTCC 6 cut(s) 71, 101, 1086, 1116, 1331, 1361
Bsc4I CCNNNNNNNGG 8 cut(s) 309, 495, 796, 946, 1115, 1135, 1294, 1310
Bse1I ACTGG 3 cut(s) 121, 979, 1041
BseBI CCWGG 8 cut(s) 61, 226, 683, 770, 791, 797, 1130, 1337
BseDI CCNNGG 7 cut(s) 59, 308, 465, 489, 519, 554, 1121
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 8 cut(s) 309, 495, 796, 946, 1115, 1135, 1294, 1310
BseMII CTCAG 3 cut(s) 51, 437, 1313
BseNI ACTGG 3 cut(s) 121, 979, 1041
BseRI GAGGAG 3 cut(s) 25, 419, 745
BseXI GCAGC 3 cut(s) 537, 617, 702
BseYI CCCAGC 2 cut(s) 47, 1090
Bsh1285I CGRYCG 2 cut(s) 438, 612
BshFI GGCC 6 cut(s) 152, 313, 488, 542, 875, 1120
BshNI GGYRCC 3 cut(s) 336, 430, 461
BsiEI CGRYCG 2 cut(s) 438, 612
BsiHKAI GWGCWC 6 cut(s) 171, 192, 209, 378, 452, 518
BsiHKCI CYCGRG 3 cut(s) 185, 266, 347
BsiWI CGTACG 1 cut(s) 738
BslFI GGGAC 3 cut(s) 40, 1047, 1400
BslI CCNNNNNNNGG 8 cut(s) 309, 495, 796, 946, 1115, 1135, 1294, 1310
BsmAI GTCTC 4 cut(s) 37, 292, 410, 1411
BsmBI CGTCTC 3 cut(s) 292, 410, 1411
BsmFI GGGAC 3 cut(s) 40, 1047, 1400
BsnI GGCC 6 cut(s) 152, 313, 488, 542, 875, 1120
Bso31I GGTCTC 1 cut(s) 37
BsoBI CYCGRG 3 cut(s) 185, 266, 347
Bsp1286I GDGCHC 9 cut(s) 171, 192, 209, 378, 452, 506, 518, 737, 1304
Bsp1407I TGTACA 1 cut(s) 777
Bsp68I TCGCGA 1 cut(s) 474
BspANI GGCC 6 cut(s) 152, 313, 488, 542, 875, 1120
BspCNI CTCAG 3 cut(s) 50, 438, 1314
BspMI ACCTGC 1 cut(s) 1234
BspPI GGATC 5 cut(s) 299, 592, 1120, 1133, 1171
BspT107I GGYRCC 3 cut(s) 336, 430, 461
BspTNI GGTCTC 1 cut(s) 37
BsrBI CCGCTC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 777
BsrI ACTGG 3 cut(s) 121, 979, 1041
BssECI CCNNGG 7 cut(s) 59, 308, 465, 489, 519, 554, 1121
BssNI GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
BssSI CACGAG 2 cut(s) 761, 821
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 2 cut(s) 761, 821
Bst2UI CCWGG 8 cut(s) 61, 226, 683, 770, 791, 797, 1130, 1337
Bst4CI ACNGT 5 cut(s) 295, 520, 887, 997, 1391
BstACI GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
BstAUI TGTACA 1 cut(s) 777
BstDEI CTNAG 3 cut(s) 37, 446, 1322
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 1 cut(s) 90
BstH2I RGCGCY 3 cut(s) 340, 434, 465
BstMAI GTCTC 4 cut(s) 37, 292, 410, 1411
BstMCI CGRYCG 2 cut(s) 438, 612
BstNI CCWGG 8 cut(s) 61, 226, 683, 770, 791, 797, 1130, 1337
BstSFI CTRYAG 1 cut(s) 1203
BstV1I GCAGC 3 cut(s) 537, 617, 702
BstV2I GAAGAC 1 cut(s) 1379
BstX2I RGATCY 4 cut(s) 270, 597, 1125, 1176
BstYI RGATCY 4 cut(s) 270, 597, 1125, 1176
BsuRI GGCC 6 cut(s) 152, 313, 488, 542, 875, 1120
BtgI CCRYGG 1 cut(s) 519
BtgZI GCGATG 3 cut(s) 364, 1154, 1208
BtrI CACGTC 1 cut(s) 453
BtsCI GGATG 1 cut(s) 90
BtuMI TCGCGA 1 cut(s) 474
BveI ACCTGC 1 cut(s) 1234
CaiI CAGNNNCTG 1 cut(s) 796
Cfr13I GGNCC 6 cut(s) 312, 793, 931, 949, 1105, 1118
CseI GACGC 7 cut(s) 427, 701, 838, 892, 1325, 1373, 1432
CsiI ACCWGGT 1 cut(s) 789
Csp6I GTAC 5 cut(s) 604, 637, 739, 778, 1237
CviQI GTAC 5 cut(s) 604, 637, 739, 778, 1237
DdeI CTNAG 3 cut(s) 37, 446, 1322
DinI GGCGCC 3 cut(s) 338, 432, 463
EaeI YGGCCR 1 cut(s) 486
EciI GGCGGA 2 cut(s) 167, 935
Ecl136II GAGCTC 2 cut(s) 190, 376
Eco130I CCWWGG 1 cut(s) 465
Eco147I AGGCCT 1 cut(s) 152
Eco24I GRGCYC 5 cut(s) 192, 378, 506, 737, 1304
Eco31I GGTCTC 1 cut(s) 37
Eco47I GGWCC 4 cut(s) 793, 931, 949, 1105
Eco53kI GAGCTC 2 cut(s) 190, 376
Eco57I CTGAAG 2 cut(s) 1006, 1172
Eco88I CYCGRG 3 cut(s) 185, 266, 347
EcoICRI GAGCTC 2 cut(s) 190, 376
EcoO109I RGGNCCY 3 cut(s) 312, 793, 931
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 8 cut(s) 59, 224, 681, 768, 789, 795, 1128, 1335
EcoT14I CCWWGG 1 cut(s) 465
EcoT38I GRGCYC 5 cut(s) 192, 378, 506, 737, 1304
EgeI GGCGCC 3 cut(s) 338, 432, 463
EheI GGCGCC 3 cut(s) 338, 432, 463
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 3 cut(s) 292, 410, 1411
FaiI YATR 2 cut(s) 44, 1205
FaqI GGGAC 3 cut(s) 40, 1047, 1400
FauI CCCGC 5 cut(s) 103, 145, 229, 259, 1109
FokI GGATG 1 cut(s) 77
FriOI GRGCYC 5 cut(s) 192, 378, 506, 737, 1304
FspBI CTAG 3 cut(s) 644, 1250, 1434
GsaI CCCAGC 2 cut(s) 51, 1094
GsuI CTGGAG 2 cut(s) 818, 1358
HaeII RGCGCY 3 cut(s) 340, 434, 465
HaeIII GGCC 6 cut(s) 152, 313, 488, 542, 875, 1120
HgaI GACGC 7 cut(s) 427, 701, 838, 892, 1325, 1373, 1432
Hin1I GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
HindIII AAGCTT 1 cut(s) 911
HphI GGTGA 3 cut(s) 535, 1228, 1309
Hpy166II GTNNAC 6 cut(s) 639, 778, 780, 841, 1000, 1105
Hpy188III TCNNGA 8 cut(s) 266, 268, 473, 868, 907, 973, 991, 1400
Hpy8I GTNNAC 6 cut(s) 639, 778, 780, 841, 1000, 1105
Hpy99I CGWCG 6 cut(s) 479, 695, 712, 854, 1319, 1348
HpyAV CCTTC 4 cut(s) 112, 865, 1024, 1196
HpyCH4III ACNGT 5 cut(s) 295, 520, 887, 997, 1391
HpyCH4IV ACGT 6 cut(s) 452, 1086, 1222, 1346, 1376, 1407
HpyCH4V TGCA 3 cut(s) 702, 718, 1198
HpyF3I CTNAG 3 cut(s) 37, 446, 1322
HpySE526I ACGT 6 cut(s) 452, 1086, 1222, 1346, 1376, 1407
Hsp92I GRCGYC 5 cut(s) 337, 431, 462, 693, 1365
KasI GGCGCC 3 cut(s) 336, 430, 461
Lsp1109I GCAGC 3 cut(s) 537, 617, 702
LweI GCATC 2 cut(s) 612, 1185
MabI ACCWGGT 1 cut(s) 789
MaeI CTAG 3 cut(s) 644, 1250, 1434
MaeII ACGT 6 cut(s) 452, 1086, 1222, 1346, 1376, 1407
MaeIII GTNAC 2 cut(s) 887, 1397
MbiI CCGCTC 1 cut(s) 254
MboII GAAGA 7 cut(s) 607, 956, 997, 1186, 1219, 1222, 1384
MflI RGATCY 4 cut(s) 270, 597, 1125, 1176
MhlI GDGCHC 9 cut(s) 171, 192, 209, 378, 452, 506, 518, 737, 1304
MluCI AATT 1 cut(s) 863
Mly113I GGCGCC 3 cut(s) 337, 431, 462
MmeI TCCRAC 5 cut(s) 93, 150, 558, 690, 1149
MroXI GAANNNNTTC 1 cut(s) 1223
MseI TTAA 1 cut(s) 944
MslI CAYNNNNRTG 1 cut(s) 521
MteI GCGCNGCGC 2 cut(s) 424, 429
MvaI CCWGG 8 cut(s) 61, 226, 683, 770, 791, 797, 1130, 1337
NarI GGCGCC 3 cut(s) 337, 431, 462
NciI CCSGG 4 cut(s) 953, 1165, 1289, 1304
NmeAIII GCCGAG 4 cut(s) 514, 535, 630, 1146
NmuCI GTSAC 1 cut(s) 1397
NruI TCGCGA 1 cut(s) 474
OliI CACNNNNGTG 1 cut(s) 521
PaeR7I CTCGAG 2 cut(s) 266, 347
PaqCI CACCTGC 1 cut(s) 1234
PceI AGGCCT 1 cut(s) 152
PcsI WCGNNNNNNNCGW 5 cut(s) 291, 759, 819, 858, 1352
PdmI GAANNNNTTC 1 cut(s) 1223
PfeI GAWTC 1 cut(s) 1208
Pfl23II CGTACG 1 cut(s) 738
PflMI CCANNNNNTGG 1 cut(s) 796
PfoI TCCNGGA 3 cut(s) 795, 1128, 1335
Ple19I CGATCG 2 cut(s) 438, 612
PluTI GGCGCC 3 cut(s) 340, 434, 465
PpuMI RGGWCCY 2 cut(s) 793, 931
Psp124BI GAGCTC 2 cut(s) 192, 378
Psp1406I AACGTT 2 cut(s) 1222, 1407
Psp5II RGGWCCY 2 cut(s) 793, 931
Psp6I CCWGG 8 cut(s) 59, 224, 681, 768, 789, 795, 1128, 1335
PspFI CCCAGC 2 cut(s) 47, 1090
PspGI CCWGG 8 cut(s) 59, 224, 681, 768, 789, 795, 1128, 1335
PspLI CGTACG 1 cut(s) 738
PspPI GGNCC 6 cut(s) 312, 793, 931, 949, 1105, 1118
PspPPI RGGWCCY 2 cut(s) 793, 931
PspXI VCTCGAGB 1 cut(s) 347
PsrI GAACNNNNNNTAC 2 cut(s) 671, 703
PstNI CAGNNNCTG 1 cut(s) 796
PsuI RGATCY 4 cut(s) 270, 597, 1125, 1176
PvuI CGATCG 2 cut(s) 438, 612
RruI TCGCGA 1 cut(s) 474
RsaI GTAC 5 cut(s) 605, 638, 740, 779, 1238
RsaNI GTAC 5 cut(s) 604, 637, 739, 778, 1237
RseI CAYNNNNRTG 1 cut(s) 521
SacI GAGCTC 2 cut(s) 192, 378
SaqAI TTAA 1 cut(s) 944
Sau96I GGNCC 6 cut(s) 312, 793, 931, 949, 1105, 1118
SduI GDGCHC 9 cut(s) 171, 192, 209, 378, 452, 506, 518, 737, 1304
SexAI ACCWGGT 1 cut(s) 789
SfaNI GCATC 2 cut(s) 612, 1185
SfcI CTRYAG 1 cut(s) 1203
SfoI GGCGCC 3 cut(s) 338, 432, 463
Sfr274I CTCGAG 2 cut(s) 266, 347
SinI GGWCC 4 cut(s) 793, 931, 949, 1105
SlaI CTCGAG 2 cut(s) 266, 347
SmiMI CAYNNNNRTG 1 cut(s) 521
SmlI CTYRAG 5 cut(s) 245, 266, 347, 830, 971
SmoI CTYRAG 5 cut(s) 245, 266, 347, 830, 971
Sse9I AATT 1 cut(s) 863
SseBI AGGCCT 1 cut(s) 152
SspDI GGCGCC 3 cut(s) 336, 430, 461
SspMI CTAG 3 cut(s) 644, 1250, 1434
SstI GAGCTC 2 cut(s) 192, 378
StuI AGGCCT 1 cut(s) 152
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 5 cut(s) 295, 520, 887, 997, 1391
TaiI ACGT 6 cut(s) 455, 1089, 1225, 1349, 1379, 1410
TasI AATT 1 cut(s) 863
TatI WGTACW 2 cut(s) 603, 777
TfiI GAWTC 1 cut(s) 1208
Tru1I TTAA 1 cut(s) 944
Tru9I TTAA 1 cut(s) 944
TseFI GTSAC 1 cut(s) 1397
TseI GCWGC 3 cut(s) 550, 630, 715
Tsp45I GTSAC 1 cut(s) 1397
TspGWI ACGGA 2 cut(s) 1022, 1435
Van91I CCANNNNNTGG 1 cut(s) 796
VpaK11BI GGWCC 4 cut(s) 793, 931, 949, 1105
XapI RAATTY 1 cut(s) 863
XhoI CTCGAG 2 cut(s) 266, 347
XmnI GAANNNNTTC 1 cut(s) 1223
XspI CTAG 3 cut(s) 644, 1250, 1434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.