Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0013472

Physical Location & Seq

Genomic Coordinates Reverse (-)

46902809 .. 46908913

Gene Structure 6105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0351800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACTTCCACTTTGAAAGTCAGTTTCAGAGGCATTGTACCTACTTCATCACCTCTGAAGTCTCGACCACACGTTTTAGACTCATTGTATGTAGCCAAGTTTCCAACCACCACCATACTATGTCCTCCTAAGCTTCGACTTCAAGCTAAAACAACCAGAGCTTCACTCTCTGCAACAATGGCAACTGGTGTGCAAGAGGCTCTTCCACCAGCTCTTACTTCTACCTCAGACCCTCCTTCAATCTTCGATGGGAAAACAAGGTTGTATATATCTTACACATGCCCATTTGCACAGCGTGCGTGGATTGCCCGGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTATTAATCTGCAAGACAGGCCTTCTTGGTACAAGGAGAAAGTCTACCCTCCTAACAAGGTGCCATCACTGGAACACAATAACGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACAGTAACTTTGAAGGGCCTTCACTGTTCCCTGATGATCCTGCAAAGAGAGAGTTTGCAGAAGAGTTGTTTACCTACACCGACTCCTTCAGCAAACCCGTGATTTCCTTTTTTAAAGGAGAAGGAACTGAGGCAGCTGCTGGTGCTGCATTTGACTATATTGAAACTGCTCTCTCGAAATTTGAAGATGGACCTTTCTTTCTTGGCCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATTGAAAGATTTCAGCCTTTTGCATTGGATGTGAAGAAGTTTGACATAACTGCAGGCAGACCTAAACTGGCAGCATGGATTGAGGAGATGGACAAAAACGATGCTTACAATAGAACCCGACGTGATCCTAAAGTGCACGTTGAAATCTACAAGAAACGCTTTCCGCCTCTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002376 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0014070 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0045087 GO:0046677 GO:0050896 GO:0051704 GO:0051707 GO:0098542 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hs1pro-1_C Hs1pro-1_N

Protein Analysis

296

Amino Acids

33.39

Weight (kDa)

8.26

Isoelectric Point (pI)

49.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	88 - 164	2.6e-21	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	93 - 159	1.6e-15	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	202 - 266	2.2e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40000
fragaria_vesca	FvH4_7g24150
malus_domestica	MD01G1148800.v1.1 MD07G1215700.v1.1
prunus_persica	Prupe.2G247600_v2.0.a1
pyrus_communis	pycom01g16720 pycom07g19800
rosa_chinensis	RchiOBHm_Chr1g0369681
rosa_laevigata	RLG00000027112
rosa_multiflora	Rmu_sc0001154.1_g000025
rosa_roxburghii	Rroxscaffold_2G00131660 Rroxscaffold_4G00287440
rosa_rugosa	Rorug01G0351800
rosa_samantha	Rh1AG359900 Rh1BG323800 Rh1CG337000 Rh1DG354400
rosa_wichuraiana	Rw1G031710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	2 cut(s)	503, 833
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	1 cut(s)	650
AcuI	CTGAAG	2 cut(s)	77, 544
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	39, 380
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	8 cut(s)	16, 143, 240, 485, 635, 656, 719, 857
AjiI	CACGTC	1 cut(s)	836
AluBI	AGCT	6 cut(s)	133, 146, 161, 212, 608, 701
AluI	AGCT	6 cut(s)	133, 146, 161, 212, 608, 701
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	503, 833
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	3 cut(s)	368, 488, 676
ApaLI	GTGCAC	1 cut(s)	848
ApeKI	GCWGC	4 cut(s)	605, 608, 617, 785
ApoI	RAATTY	1 cut(s)	650
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 464, 496
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	2 cut(s)	345, 723
AspS9I	GGNCC	2 cut(s)	488, 662
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	42
AvaII	GGWCC	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	852
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	4 cut(s)	595, 604, 617, 797
BccI	CCATC	4 cut(s)	242, 421, 653, 796
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	765
BisI	GCNGC	4 cut(s)	606, 609, 618, 786
BlsI	GCNGC	4 cut(s)	607, 610, 619, 787
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	662
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	488, 662
BmiI	GGNNCC	2 cut(s)	348, 411
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	805
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	1 cut(s)	129
BpuMI	CCSGG	1 cut(s)	310
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bse1I	ACTGG	3 cut(s)	190, 423, 786
BseGI	GGATG	1 cut(s)	748
BseMII	CTCAG	2 cut(s)	240, 591
BseNI	ACTGG	3 cut(s)	190, 423, 786
BseRI	GAGGAG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	4 cut(s)	595, 604, 617, 797
BshFI	GGCC	3 cut(s)	370, 490, 678
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	852
BsiSI	CCGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	370, 490, 678
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	2 cut(s)	508, 838
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	3 cut(s)	370, 490, 678
BspCNI	CTCAG	2 cut(s)	239, 592
BspLI	GGNNCC	2 cut(s)	348, 411
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	503, 833
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	409
BsrI	ACTGG	3 cut(s)	190, 423, 786
BssMI	GATC	2 cut(s)	508, 838
Bst4CI	ACNGT	2 cut(s)	476, 498
Bst6I	CTCTTC	2 cut(s)	207, 528
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	297, 769
BstDEI	CTNAG	3 cut(s)	129, 226, 600
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	2 cut(s)	511, 841
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	508, 838
BstMWI	GCNNNNNNNGC	6 cut(s)	179, 296, 305, 367, 614, 617
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	4 cut(s)	595, 604, 617, 797
BsuRI	GGCC	3 cut(s)	370, 490, 678
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	416, 494
Cac8I	GCNNGC	2 cut(s)	297, 769
CaiI	CAGNNNCTG	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	488, 662
Csp6I	GTAC	2 cut(s)	38, 379
CviAII	CATG	2 cut(s)	279, 789
CviQI	GTAC	2 cut(s)	38, 379
DdeI	CTNAG	3 cut(s)	129, 226, 600
DpnI	GATC	2 cut(s)	510, 840
DpnII	GATC	2 cut(s)	508, 838
DraI	TTTAAA	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	207, 528
EarI	CTCTTC	2 cut(s)	207, 528
EciI	GGCGGA	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	77, 544
EcoO109I	RGGNCCY	1 cut(s)	488
FaeI	CATG	2 cut(s)	282, 792
FalI	AAGNNNNNCTT	4 cut(s)	186, 218, 857, 889
FatI	CATG	2 cut(s)	278, 788
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	4 cut(s)	606, 609, 618, 786
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	4 cut(s)	606, 609, 618, 786
GluI	GCNGC	4 cut(s)	606, 609, 618, 786
HaeIII	GGCC	3 cut(s)	370, 490, 678
HapII	CCGG	1 cut(s)	310
Hin1II	CATG	2 cut(s)	282, 792
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	80, 448, 554
HpaII	CCGG	1 cut(s)	310
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	394, 543, 850
Hpy188I	TCNGA	4 cut(s)	29, 57, 229, 890
Hpy188III	TCNNGA	3 cut(s)	63, 452, 646
Hpy8I	GTNNAC	3 cut(s)	394, 543, 850
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	6 cut(s)	246, 381, 479, 501, 568, 587
HpyCH4III	ACNGT	2 cut(s)	476, 498
HpyCH4IV	ACGT	3 cut(s)	72, 835, 852
HpyF10VI	GCNNNNNNNGC	6 cut(s)	179, 296, 305, 367, 614, 617
HpyF3I	CTNAG	3 cut(s)	129, 226, 600
HpySE526I	ACGT	3 cut(s)	72, 835, 852
Hsp92II	CATG	2 cut(s)	282, 792
Kzo9I	GATC	2 cut(s)	508, 838
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	4 cut(s)	595, 604, 617, 797
LweI	GCATC	1 cut(s)	805
MaeII	ACGT	3 cut(s)	72, 835, 852
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	510, 840
MboI	GATC	2 cut(s)	508, 838
MboII	GAAGA	5 cut(s)	194, 235, 545, 668, 760
MhlI	GDGCHC	1 cut(s)	852
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	3 cut(s)	341, 650, 680
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	3 cut(s)	74, 457, 548
MmeI	TCCRAC	1 cut(s)	128
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	2 cut(s)	345, 723
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	2 cut(s)	354, 585
Msp20I	TGGCCA	1 cut(s)	678
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	1 cut(s)	310
MspR9I	CCNGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	6 cut(s)	179, 296, 305, 367, 614, 617
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	508, 838
NlaIII	CATG	2 cut(s)	282, 792
NlaIV	GGNNCC	2 cut(s)	348, 411
NspI	RCATGY	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	370
PciSI	GCTCTTC	1 cut(s)	207
PdmI	GAANNNNTTC	2 cut(s)	345, 723
PkrI	GCNGC	4 cut(s)	607, 610, 619, 787
PleI	GAGTC	3 cut(s)	74, 456, 548
PpsI	GAGTC	3 cut(s)	74, 456, 548
PshBI	ATTAAT	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	348, 411
PspPI	GGNCC	2 cut(s)	488, 662
PstI	CTGCAG	1 cut(s)	769
PstNI	CAGNNNCTG	1 cut(s)	611
PvuII	CAGCTG	1 cut(s)	608
RsaI	GTAC	2 cut(s)	39, 380
RsaNI	GTAC	2 cut(s)	38, 379
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	354, 585
SatI	GCNGC	4 cut(s)	606, 609, 618, 786
Sau3AI	GATC	2 cut(s)	508, 838
Sau96I	GGNCC	2 cut(s)	488, 662
SchI	GAGTC	3 cut(s)	74, 457, 548
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	1 cut(s)	805
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	662
Sse9I	AATT	3 cut(s)	341, 650, 680
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	476, 498
TaiI	ACGT	3 cut(s)	75, 838, 855
TaqI	TCGA	5 cut(s)	64, 136, 246, 471, 647
TasI	AATT	3 cut(s)	341, 650, 680
Tru1I	TTAA	2 cut(s)	354, 585
Tru9I	TTAA	2 cut(s)	354, 585
TscAI	CASTG	2 cut(s)	423, 501
TseI	GCWGC	4 cut(s)	605, 608, 617, 785
TspDTI	ATGAA	2 cut(s)	36, 703
TspRI	CASTG	2 cut(s)	423, 501
VneI	GTGCAC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	1 cut(s)	650
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	2 cut(s)	345, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.