Rroxscaffold_2G00131660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0013472
Physical Location & Seq
Forward (+)
68426349 .. 68427601
1253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00131660.1

Sequence Viewer

Length: 405 bp
ATGAAGAGGAGGACCATCACAGCCTCGCGCCGGCCGCGTAGCCTAGCACCACCCACTATAGAGCCATCGGGATCCGAGCTTCGGCGAGGATTTGAAATGGTTCGCTTGCTTCGTGAAGAAGGAGATTTCGATTCTCTCCGAGACCGATGGTCTCCTCGGATATACCCGCAAACCCTCGAATTCTCCAACAAGCTCCACCACCTCTCCATCCTCGGCTCCTTTCGCTCCGCCCATATCCAATCCGACATTTCCACCGCTCCACTATGGTGCCGTAACCGAAAACTGGTCGAGAGTTTGCAATTGTTAGGGCGCGGCGGTGGCAAGGCCGTGAACCCATCAAAGGTTACGGATTCCGAGAGGTATGGATTCGGTACGGTTGCGGCAAGAAGAGTTTCTTGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.17

Weight (kDa)

10.99

Isoelectric Point (pI)

85.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G40000
fragaria_vesca FvH4_7g24150
malus_domestica MD01G1148800.v1.1 MD07G1215700.v1.1
prunus_persica Prupe.2G247600_v2.0.a1
pyrus_communis pycom01g16720 pycom07g19800
rosa_chinensis RchiOBHm_Chr1g0369681
rosa_laevigata RLG00000027112
rosa_multiflora Rmu_sc0001154.1_g000025
rosa_roxburghii Rroxscaffold_2G00131660 Rroxscaffold_4G00287440
rosa_rugosa Rorug01G0351800
rosa_samantha Rh1AG359900 Rh1BG323800 Rh1CG337000 Rh1DG354400
rosa_wichuraiana Rw1G031710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 267
AccBSI CCGCTC 1 cut(s) 257
AccII CGCG 3 cut(s) 28, 37, 312
AciI CCGC 7 cut(s) 35, 167, 228, 255, 312, 315, 380
AclWI GGATC 2 cut(s) 66, 79
AcoI YGGCCR 1 cut(s) 32
AcsI RAATTY 1 cut(s) 179
AfaI GTAC 1 cut(s) 373
AfiI CCNNNNNNNGG 4 cut(s) 30, 81, 283, 340
AgsI TTSAA 1 cut(s) 95
AhdI GACNNNNNGTC 1 cut(s) 148
AleI CACNNNNGTG 1 cut(s) 265
AluBI AGCT 2 cut(s) 79, 193
AluI AGCT 2 cut(s) 79, 193
Alw26I GTCTC 2 cut(s) 135, 156
AlwI GGATC 2 cut(s) 66, 79
AoxI GGCC 2 cut(s) 32, 324
ApoI RAATTY 1 cut(s) 179
Asp700I GAANNNNTTC 2 cut(s) 99, 391
AspLEI GCGC 2 cut(s) 30, 312
AspS9I GGNCC 1 cut(s) 12
AvaII GGWCC 1 cut(s) 12
BamHI GGATCC 1 cut(s) 71
BanI GGYRCC 1 cut(s) 267
BccI CCATC 5 cut(s) 23, 73, 141, 215, 343
BceAI ACGGC 2 cut(s) 255, 311
BcoDI GTCTC 2 cut(s) 135, 156
BfaI CTAG 1 cut(s) 44
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 3 cut(s) 35, 313, 381
BlsI GCNGC 3 cut(s) 36, 314, 382
Bme18I GGWCC 1 cut(s) 12
BmeRI GACNNNNNGTC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 3 cut(s) 73, 217, 269
BsaI GGTCTC 2 cut(s) 135, 156
BsaJI CCNNGG 2 cut(s) 155, 211
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 4 cut(s) 30, 81, 283, 340
Bse118I RCCGGY 1 cut(s) 30
Bse1I ACTGG 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 155, 211
BseGI GGATG 1 cut(s) 207
BseLI CCNNNNNNNGG 4 cut(s) 30, 81, 283, 340
BseNI ACTGG 1 cut(s) 288
BseRI GAGGAG 2 cut(s) 22, 144
BseX3I CGGCCG 1 cut(s) 32
Bsh1236I CGCG 3 cut(s) 28, 37, 312
Bsh1285I CGRYCG 1 cut(s) 35
BshFI GGCC 2 cut(s) 34, 326
BshNI GGYRCC 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 35
BsiSI CCGG 1 cut(s) 31
BslI CCNNNNNNNGG 4 cut(s) 30, 81, 283, 340
BsmAI GTCTC 2 cut(s) 135, 156
BsnI GGCC 2 cut(s) 34, 326
Bso31I GGTCTC 2 cut(s) 135, 156
Bsp143I GATC 1 cut(s) 71
BspACI CCGC 7 cut(s) 35, 167, 228, 255, 312, 315, 380
BspANI GGCC 2 cut(s) 34, 326
BspFNI CGCG 3 cut(s) 28, 37, 312
BspLI GGNNCC 3 cut(s) 73, 217, 269
BspPI GGATC 2 cut(s) 66, 79
BspT107I GGYRCC 1 cut(s) 267
BspTNI GGTCTC 2 cut(s) 135, 156
BsrBI CCGCTC 1 cut(s) 257
BsrFI RCCGGY 1 cut(s) 30
BsrI ACTGG 1 cut(s) 288
BssAI RCCGGY 1 cut(s) 30
BssECI CCNNGG 2 cut(s) 155, 211
BssMI GATC 1 cut(s) 71
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 382
BstC8I GCNNGC 2 cut(s) 32, 107
BstF5I GGATG 1 cut(s) 207
BstFNI CGCG 3 cut(s) 28, 37, 312
BstHHI GCGC 2 cut(s) 30, 312
BstKTI GATC 1 cut(s) 74
BstMAI GTCTC 2 cut(s) 135, 156
BstMBI GATC 1 cut(s) 71
BstMCI CGRYCG 1 cut(s) 35
BstMWI GCNNNNNNNGC 3 cut(s) 34, 222, 318
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 3 cut(s) 28, 37, 312
BstX2I RGATCY 1 cut(s) 71
BstYI RGATCY 1 cut(s) 71
BstZI CGGCCG 1 cut(s) 32
BsuRI GGCC 2 cut(s) 34, 326
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 32, 107
CfoI GCGC 2 cut(s) 30, 312
Cfr10I RCCGGY 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 12
Csp6I GTAC 1 cut(s) 372
CviJI RGCY 8 cut(s) 23, 34, 42, 64, 79, 193, 216, 326
CviKI_1 RGCY 8 cut(s) 23, 34, 42, 64, 79, 193, 216, 326
CviQI GTAC 1 cut(s) 372
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 1 cut(s) 32
EagI CGGCCG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 382
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 217
EclXI CGGCCG 1 cut(s) 32
Eco31I GGTCTC 2 cut(s) 135, 156
Eco47I GGWCC 1 cut(s) 12
Eco52I CGGCCG 1 cut(s) 32
EcoRI GAATTC 1 cut(s) 179
FaiI YATR 6 cut(s) 59, 163, 234, 265, 363, 403
FalI AAGNNNNNCTT 1 cut(s) 379
FauI CCCGC 1 cut(s) 174
Fnu4HI GCNGC 3 cut(s) 35, 313, 381
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 35, 313, 381
FspBI CTAG 1 cut(s) 44
GlaI GCGC 2 cut(s) 29, 311
GluI GCNGC 3 cut(s) 35, 313, 381
HaeIII GGCC 2 cut(s) 34, 326
HapII CCGG 1 cut(s) 31
HhaI GCGC 2 cut(s) 30, 312
Hin6I GCGC 2 cut(s) 28, 310
HinP1I GCGC 2 cut(s) 28, 310
HinfI GANTC 3 cut(s) 131, 350, 366
HpaII CCGG 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 331
Hpy188I TCNGA 5 cut(s) 76, 140, 159, 244, 355
Hpy188III TCNNGA 3 cut(s) 69, 113, 289
Hpy8I GTNNAC 1 cut(s) 331
HpyAV CCTTC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 298
HpyF10VI GCNNNNNNNGC 3 cut(s) 34, 222, 318
HspAI GCGC 2 cut(s) 28, 310
KroI GCCGGC 1 cut(s) 30
KroNI GCCGGC 1 cut(s) 32
Kzo9I GATC 1 cut(s) 71
LmnI GCTCC 4 cut(s) 198, 221, 230, 262
LpnPI CCDG 2 cut(s) 44, 269
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 272, 343
MalI GATC 1 cut(s) 73
MbiI CCGCTC 1 cut(s) 257
MboI GATC 1 cut(s) 71
MboII GAAGA 3 cut(s) 16, 128, 399
MfeI CAATTG 1 cut(s) 299
MflI RGATCY 1 cut(s) 71
MluCI AATT 2 cut(s) 179, 299
MmeI TCCRAC 2 cut(s) 210, 267
MnlI CCTC 8 cut(s) 3, 34, 80, 165, 185, 212, 221, 351
MroNI GCCGGC 1 cut(s) 30
MroXI GAANNNNTTC 2 cut(s) 99, 391
MslI CAYNNNNRTG 1 cut(s) 265
MspI CCGG 1 cut(s) 31
MunI CAATTG 1 cut(s) 299
MvnI CGCG 3 cut(s) 28, 37, 312
MwoI GCNNNNNNNGC 3 cut(s) 34, 222, 318
NaeI GCCGGC 1 cut(s) 32
NdeII GATC 1 cut(s) 71
NgoMIV GCCGGC 1 cut(s) 30
NlaIV GGNNCC 3 cut(s) 73, 217, 269
NmeAIII GCCGAG 1 cut(s) 192
OliI CACNNNNGTG 1 cut(s) 265
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PdiI GCCGGC 1 cut(s) 32
PdmI GAANNNNTTC 2 cut(s) 99, 391
PfeI GAWTC 3 cut(s) 131, 350, 366
PkrI GCNGC 3 cut(s) 36, 314, 382
PspN4I GGNNCC 3 cut(s) 73, 217, 269
PspPI GGNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 71
RsaI GTAC 1 cut(s) 373
RsaNI GTAC 1 cut(s) 372
RseI CAYNNNNRTG 1 cut(s) 265
SatI GCNGC 3 cut(s) 35, 313, 381
Sau3AI GATC 1 cut(s) 71
Sau96I GGNCC 1 cut(s) 12
SetI ASST 5 cut(s) 81, 195, 204, 345, 362
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 1 cut(s) 12
SmiMI CAYNNNNRTG 1 cut(s) 265
Sse9I AATT 2 cut(s) 179, 299
SsiI CCGC 7 cut(s) 35, 167, 228, 255, 312, 315, 380
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 129, 177, 288
TaqII GACCGA 1 cut(s) 159
TasI AATT 2 cut(s) 179, 299
TauI GCSGC 3 cut(s) 37, 315, 383
TfiI GAWTC 3 cut(s) 131, 350, 366
TspDTI ATGAA 2 cut(s) 17, 390
TspGWI ACGGA 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 12
XapI RAATTY 1 cut(s) 179
XmnI GAANNNNTTC 2 cut(s) 99, 391
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.